mRNA_M-pyrifera_M_contig106312.1366.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig106312.1366.1
Unique NamemRNA_M-pyrifera_M_contig106312.1366.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig106312.1366.1 vs. uniprot
Match: A0A2E7KLC3_9PLAN (Uncharacterized protein n=6 Tax=Gimesia TaxID=1649453 RepID=A0A2E7KLC3_9PLAN)

HSP 1 Score: 195 bits (496), Expect = 5.140e-62
Identity = 97/100 (97.00%), Postives = 100/100 (100.00%), Query Frame = 1 
Query:    1 MEIMLTMLLGVATAAGPSVINADFEQKDVRTGLPTGWSYTSLPGRQHLVNYQTTQVTAAQKQGSALSITVASDHPEQIVAYNIHQDLQGLTPGKAYRISA 300
            MEIMLTMLLGVATAAGP+VINADFEQKDVRTGLPTGWSYTSLPGRQHLVNYQTTQVTAA+KQGSALSITVASDHPEQIVAYNIHQDLQGLTPGKAYR+SA
Sbjct:    1 MEIMLTMLLGVATAAGPTVINADFEQKDVRTGLPTGWSYTSLPGRQHLVNYQTTQVTAAKKQGSALSITVASDHPEQIVAYNIHQDLQGLTPGKAYRVSA 100
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BLAST of mRNA_M-pyrifera_M_contig106312.1366.1 vs. uniprot
Match: A0A518AEU3_9PLAN (Uncharacterized protein n=3 Tax=Gimesia panareensis TaxID=2527978 RepID=A0A518AEU3_9PLAN)

HSP 1 Score: 161 bits (407), Expect = 1.760e-48
Identity = 79/100 (79.00%), Postives = 87/100 (87.00%), Query Frame = 1 
Query:    1 MEIMLTMLLGVATAAGPSVINADFEQKDVRTGLPTGWSYTSLPGRQHLVNYQTTQVTAAQKQGSALSITVASDHPEQIVAYNIHQDLQGLTPGKAYRISA 300
            MEIMLTMLL  ATA  P+V+NADFEQKD RTGLPTGW++TSLP RQHLVNY+TTQV A Q Q  ALSITVASDHPE  VAYNIHQDL+GLTPGK+YR+SA
Sbjct:    1 MEIMLTMLLSFATAVSPTVVNADFEQKDARTGLPTGWAFTSLPDRQHLVNYRTTQVAAEQGQTRALSITVASDHPEHKVAYNIHQDLKGLTPGKSYRVSA 100
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BLAST of mRNA_M-pyrifera_M_contig106312.1366.1 vs. uniprot
Match: A0A517V607_9PLAN (Uncharacterized protein n=1 Tax=Gimesia algae TaxID=2527971 RepID=A0A517V607_9PLAN)

HSP 1 Score: 103 bits (257), Expect = 8.800e-26
Identity = 52/101 (51.49%), Postives = 71/101 (70.30%), Query Frame = 1 
Query:    1 MEIMLTMLLGVATAAGPSVINADFEQKDVRTGLPTGWSYTSLPGRQHLVNYQTTQVTAAQKQGS-ALSITVASDHPEQIVAYNIHQDLQGLTPGKAYRISA 300
            M I+L+++L  AT+  P V+NADFE  D R+  P+GW +TSLPG+  LV+YQ+  +   +  GS  L+I +A+DHP+Q VAYN HQDLQG   GK YR+SA
Sbjct:    1 MLILLSLVLCAATSQAPQVVNADFETVDARSATPSGWLFTSLPGQSQLVSYQS--LLEPEANGSRVLAIRIAADHPQQQVAYNAHQDLQGFEAGKTYRVSA 99
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BLAST of mRNA_M-pyrifera_M_contig106312.1366.1 vs. uniprot
Match: A0A517X429_9PLAN (Uncharacterized protein n=1 Tax=Gimesia maris TaxID=122 RepID=A0A517X429_9PLAN)

HSP 1 Score: 94.7 bits (234), Expect = 2.540e-22
Identity = 48/101 (47.52%), Postives = 68/101 (67.33%), Query Frame = 1 
Query:    1 MEIMLTMLLGVATAAGPSVINADFEQKDVRTGLPTGWSYTSLPGRQHLVNYQTTQVTAAQKQGS-ALSITVASDHPEQIVAYNIHQDLQGLTPGKAYRISA 300
            M ++L + L  A +  P ++NADFE  + R+  P+GW +TSLPG+  LV+YQ+  +   +  GS  L+I VA+DHP+Q VAYN HQDLQG   GK YR++A
Sbjct:    1 MVLLLALSLCAAASKTPQIVNADFETVNPRSATPSGWLFTSLPGQSQLVSYQS--LLEPEVNGSRVLAIKVATDHPQQRVAYNAHQDLQGFQAGKTYRVTA 99
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig106312.1366.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A2E7KLC3_9PLAN5.140e-6297.00Uncharacterized protein n=6 Tax=Gimesia TaxID=1649... [more]
A0A518AEU3_9PLAN1.760e-4879.00Uncharacterized protein n=3 Tax=Gimesia panareensi... [more]
A0A517V607_9PLAN8.800e-2651.49Uncharacterized protein n=1 Tax=Gimesia algae TaxI... [more]
A0A517X429_9PLAN2.540e-2247.52Uncharacterized protein n=1 Tax=Gimesia maris TaxI... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig106312contigM-pyrifera_M_contig106312:1..300 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size300
Cds size300
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815573.150005-CDS-M-pyrifera_M_contig106312:0..3001622815573.150005-CDS-M-pyrifera_M_contig106312:0..300Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig106312 1..300 -
1692277469.7667084-CDS-M-pyrifera_M_contig106312:0..3001692277469.7667084-CDS-M-pyrifera_M_contig106312:0..300Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig106312 1..300 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig106312.1366.1prot_M-pyrifera_M_contig106312.1366.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig106312 1..300 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig106312.1366.1

>prot_M-pyrifera_M_contig106312.1366.1 ID=prot_M-pyrifera_M_contig106312.1366.1|Name=mRNA_M-pyrifera_M_contig106312.1366.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=100bp
MEIMLTMLLGVATAAGPSVINADFEQKDVRTGLPTGWSYTSLPGRQHLVN
YQTTQVTAAQKQGSALSITVASDHPEQIVAYNIHQDLQGLTPGKAYRISA
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mRNA from alignment at M-pyrifera_M_contig106312:1..300-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig106312.1366.1 ID=mRNA_M-pyrifera_M_contig106312.1366.1|Name=mRNA_M-pyrifera_M_contig106312.1366.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=300bp|location=Sequence derived from alignment at M-pyrifera_M_contig106312:1..300- (Macrocystis pyrifera P11B4 male)
ATGGAAATCATGCTGACCATGTTACTGGGTGTTGCCACGGCAGCAGGCCC
CTCAGTCATCAACGCAGACTTCGAACAGAAAGACGTCCGTACCGGCCTGC
CGACCGGCTGGTCTTACACTTCGCTACCGGGCAGACAACACCTGGTGAAT
TACCAGACCACGCAGGTCACTGCAGCACAAAAACAGGGCAGCGCGCTGTC
CATCACCGTCGCCTCGGATCACCCCGAGCAGATCGTCGCCTACAACATTC
ACCAGGACCTGCAAGGGCTGACTCCCGGCAAAGCCTACCGCATCTCTGCC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig106312:1..300-

>mRNA_M-pyrifera_M_contig106312.1366.1 ID=mRNA_M-pyrifera_M_contig106312.1366.1|Name=mRNA_M-pyrifera_M_contig106312.1366.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=600bp|location=Sequence derived from alignment at M-pyrifera_M_contig106312:1..300- (Macrocystis pyrifera P11B4 male)
ATGGAAATCATGCTGACCATGTTACTGGGTGTTGCCACGGCAGCAGGCCC
CTCAGTCATCAACGCAGACTTCGAACAGAAAGACGTCCGTACCGGCCTGC
CGACCGGCTGGTCTTACACTTCGCTACCGGGCAGACAACACCTGGTGAAT
TACCAGACCACGCAGGTCACTGCAGCACAAAAACAGGGCAGCGCGCTGTC
CATCACCGTCGCCTCGGATCACCCCGAGCAGATCGTCGCCTACAACATTC
ACCAGGACCTGCAAGGGCTGACTCCCGGCAAAGCCTACCGCATCTCTGCC
ATGGAAATCATGCTGACCATGTTACTGGGTGTTGCCACGGCAGCAGGCCC
CTCAGTCATCAACGCAGACTTCGAACAGAAAGACGTCCGTACCGGCCTGC
CGACCGGCTGGTCTTACACTTCGCTACCGGGCAGACAACACCTGGTGAAT
TACCAGACCACGCAGGTCACTGCAGCACAAAAACAGGGCAGCGCGCTGTC
CATCACCGTCGCCTCGGATCACCCCGAGCAGATCGTCGCCTACAACATTC
ACCAGGACCTGCAAGGGCTGACTCCCGGCAAAGCCTACCGCATCTCTGCC
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