mRNA_M-pyrifera_M_contig106306.1365.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig106306.1365.1
Unique NamemRNA_M-pyrifera_M_contig106306.1365.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig106306.1365.1 vs. uniprot
Match: A0A836U721_9BACT (DUF4091 domain-containing protein n=1 Tax=Candidatus Handelsmanbacteria bacterium TaxID=2099671 RepID=A0A836U721_9BACT)

HSP 1 Score: 56.2 bits (134), Expect = 4.060e-7
Identity = 29/73 (39.73%), Postives = 43/73 (58.90%), Query Frame = 1
Query:   22 WAPRTDIFANGDGAFFWPGAEGPITSIRYETLRDGIEDIELFKLLTRST----ITPLLHTVITNGTNFTQSPQ 228
            W P +   ANGDG+ F+ G +GPI+SIR E +RDGIED EL  +L           L   ++ + ++++Q PQ
Sbjct:  718 WNPASYGTANGDGSLFYAGVDGPISSIRLENVRDGIEDYELLVMLAAKAGGQAAQALSARLVRSASDYSQDPQ 790          
BLAST of mRNA_M-pyrifera_M_contig106306.1365.1 vs. uniprot
Match: A0A1V6GQZ9_9BACT (DUF4091 domain-containing protein n=2 Tax=Verrucomicrobia bacterium ADurb.Bin070 TaxID=1852927 RepID=A0A1V6GQZ9_9BACT)

HSP 1 Score: 55.1 bits (131), Expect = 4.580e-7
Identity = 29/83 (34.94%), Postives = 46/83 (55.42%), Query Frame = 1
Query:   22 WAPRTDIFANGDGAFFWPGAEGPITSIRYETLRDGIEDIELFKLL----TRSTITPLLHTVITNGTNFTQSPQLVMDIRAKIA 258
            W     +   GDG   +PGA+GP+ SIR   +RDGIED E  ++L    +R+    +   +I +  +FT+ P  +  +RA+IA
Sbjct:  111 WVAEYSLKMPGDGQLLYPGADGPLPSIRLAQVRDGIEDYEWLQMLERRASRAAADAMTGELIRSMADFTRDPAALRRVRARIA 193          
BLAST of mRNA_M-pyrifera_M_contig106306.1365.1 vs. uniprot
Match: A0A7Y9LFD5_9ACTN (DUF4091 domain-containing protein n=1 Tax=Microlunatus parietis TaxID=682979 RepID=A0A7Y9LFD5_9ACTN)

HSP 1 Score: 55.8 bits (133), Expect = 5.560e-7
Identity = 31/98 (31.63%), Postives = 51/98 (52.04%), Query Frame = 1
Query:   22 WAPRTDIFANGDGAFFWPGAEGPITSIRYETLRDGIEDIELFK---------------LLTRSTITPLLHTVITNGTNFTQSPQLVMDIRAKIATMAM 270
            W P T     GDG+ ++PGA+GP++S+R+E +RDG+ED  L +               LL R+        V+T+  +FT+ P +    R ++A  A+
Sbjct:  738 WNPATFYGTAGDGSLYYPGADGPMSSLRFENVRDGLEDYNLMQELRRAIEAHPDAPRGLLDRARKALGARDVVTDSRHFTEDPAVYRAWRHEVAETAV 835          
BLAST of mRNA_M-pyrifera_M_contig106306.1365.1 vs. uniprot
Match: A0A7X6YEE9_9BACT (DUF4091 domain-containing protein n=1 Tax=Lentisphaerae bacterium TaxID=1932692 RepID=A0A7X6YEE9_9BACT)

HSP 1 Score: 54.3 bits (129), Expect = 1.930e-6
Identity = 29/83 (34.94%), Postives = 44/83 (53.01%), Query Frame = 1
Query:   22 WAPRTDIFANGDGAFFWPGAEGPITSIRYETLRDGIEDIELFKLLTR----STITPLLHTVITNGTNFTQSPQLVMDIRAKIA 258
            W     +   GDG   +PGA+GP+ SIR   +RDGIED E  ++L R    +    +   +I   T+FT+ P  +  +R +IA
Sbjct:  702 WVAEYSLKMPGDGQLLYPGADGPLPSIRLAQVRDGIEDYEWLQMLERRAGRAAAEAMTGELIRGMTDFTRDPAALRRVRVRIA 784          
BLAST of mRNA_M-pyrifera_M_contig106306.1365.1 vs. uniprot
Match: A0A7C3XA06_9BACT (DUF4091 domain-containing protein n=1 Tax=Armatimonadetes bacterium TaxID=2033014 RepID=A0A7C3XA06_9BACT)

HSP 1 Score: 53.9 bits (128), Expect = 2.540e-6
Identity = 24/49 (48.98%), Postives = 29/49 (59.18%), Query Frame = 1
Query:   19 IWAPRTDIFANGDGAFFWPGAEGPITSIRYETLRDGIEDIELFKLLTRS 165
             W    D FA GD    WPG   P +S+RYE +R+GIED E  K+L RS
Sbjct:  307 FWDVPFDQFAPGDNWIVWPGTRAPRSSLRYEAMREGIEDYEYLKILERS 355          
BLAST of mRNA_M-pyrifera_M_contig106306.1365.1 vs. uniprot
Match: A0A7C3W170_9BACT (DUF4091 domain-containing protein n=1 Tax=Armatimonadetes bacterium TaxID=2033014 RepID=A0A7C3W170_9BACT)

HSP 1 Score: 53.9 bits (128), Expect = 2.580e-6
Identity = 32/77 (41.56%), Postives = 43/77 (55.84%), Query Frame = 1
Query:   16 WIWAPRTDIFAN----GDGAFFWPGAEGPITSIRYETLRDGIEDIELFKLLTRST---ITPLLHTVITNGTNFTQSP 225
            W   P TD+ ++    GD    +PG  GP+TSIR E +RDGIED EL KLL R        +  +VI + T++T  P
Sbjct:  475 WRGDPWTDLQSDWLPPGDSHIVYPGKRGPMTSIRLEAMRDGIEDFELLKLLERKDKKKARMICDSVIRSMTDYTMDP 551          
BLAST of mRNA_M-pyrifera_M_contig106306.1365.1 vs. uniprot
Match: A0A7V3MLW4_9BACT (DUF4091 domain-containing protein n=1 Tax=Armatimonadetes bacterium TaxID=2033014 RepID=A0A7V3MLW4_9BACT)

HSP 1 Score: 53.9 bits (128), Expect = 2.590e-6
Identity = 29/83 (34.94%), Postives = 46/83 (55.42%), Query Frame = 1
Query:   49 NGDGAFFWPGAEGPITSIRYETLRDGIEDIELFKLLTRST-------------ITPLLHTVITNGTNFTQSPQLVMDIRAKIA 258
            NGDG   +PG  GP++SIR E +RDGIED E F LL++ T             +  +   V+ + T++T  P +++  R ++A
Sbjct:  487 NGDGQLIYPGPNGPLSSIRLECIRDGIEDYEYFYLLSQLTKRAKGKDVTQARKLLAVDSRVVKSLTDYTADPHVILSARRELA 569          
BLAST of mRNA_M-pyrifera_M_contig106306.1365.1 vs. uniprot
Match: A0A1F5YQ68_9BACT (DUF4091 domain-containing protein n=1 Tax=Candidatus Glassbacteria bacterium RIFCSPLOWO2_12_FULL_58_11 TaxID=1817867 RepID=A0A1F5YQ68_9BACT)

HSP 1 Score: 53.5 bits (127), Expect = 3.610e-6
Identity = 23/45 (51.11%), Postives = 31/45 (68.89%), Query Frame = 1
Query:   22 WAPRTDIFANGDGAFFWPGAEGPITSIRYETLRDGIEDIELFKLL 156
            W P +   ANGDG F + G +GP+++IR E +RDG+ED EL  LL
Sbjct:  720 WNPASWRTANGDGCFIYSGPDGPVSTIRCENIRDGLEDTELLYLL 764          
BLAST of mRNA_M-pyrifera_M_contig106306.1365.1 vs. uniprot
Match: A0A832NA72_9BACT (DUF4091 domain-containing protein n=1 Tax=Armatimonadetes bacterium TaxID=2033014 RepID=A0A832NA72_9BACT)

HSP 1 Score: 52.4 bits (124), Expect = 3.620e-6
Identity = 24/43 (55.81%), Postives = 29/43 (67.44%), Query Frame = 1
Query:   28 PRTDIFANGDGAFFWPGAEGPITSIRYETLRDGIEDIELFKLL 156
            P T    NGDG+  +PG EGPI S+R+E LRDGIED +   LL
Sbjct:   73 PMTYPGGNGDGSLLYPGEEGPIHSLRWEILRDGIEDYDYLALL 115          
BLAST of mRNA_M-pyrifera_M_contig106306.1365.1 vs. uniprot
Match: A0A7C5NNP6_9BACT (DUF4091 domain-containing protein n=1 Tax=Lentisphaerae bacterium TaxID=1932692 RepID=A0A7C5NNP6_9BACT)

HSP 1 Score: 52.8 bits (125), Expect = 6.560e-6
Identity = 23/43 (53.49%), Postives = 29/43 (67.44%), Query Frame = 1
Query:   28 PRTDIFANGDGAFFWPGAEGPITSIRYETLRDGIEDIELFKLL 156
            PR+    NGDG   +PG  GP+ S+R+E +RDGIED E F LL
Sbjct:  438 PRSFEPTNGDGMLIYPGENGPLDSLRWEAIRDGIEDYEYFALL 480          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig106306.1365.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836U721_9BACT4.060e-739.73DUF4091 domain-containing protein n=1 Tax=Candidat... [more]
A0A1V6GQZ9_9BACT4.580e-734.94DUF4091 domain-containing protein n=2 Tax=Verrucom... [more]
A0A7Y9LFD5_9ACTN5.560e-731.63DUF4091 domain-containing protein n=1 Tax=Microlun... [more]
A0A7X6YEE9_9BACT1.930e-634.94DUF4091 domain-containing protein n=1 Tax=Lentisph... [more]
A0A7C3XA06_9BACT2.540e-648.98DUF4091 domain-containing protein n=1 Tax=Armatimo... [more]
A0A7C3W170_9BACT2.580e-641.56DUF4091 domain-containing protein n=1 Tax=Armatimo... [more]
A0A7V3MLW4_9BACT2.590e-634.94DUF4091 domain-containing protein n=1 Tax=Armatimo... [more]
A0A1F5YQ68_9BACT3.610e-651.11DUF4091 domain-containing protein n=1 Tax=Candidat... [more]
A0A832NA72_9BACT3.620e-655.81DUF4091 domain-containing protein n=1 Tax=Armatimo... [more]
A0A7C5NNP6_9BACT6.560e-653.49DUF4091 domain-containing protein n=1 Tax=Lentisph... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig106306contigM-pyrifera_M_contig106306:108..389 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size282
Cds size282
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815573.1153889-CDS-M-pyrifera_M_contig106306:107..3891622815573.1153889-CDS-M-pyrifera_M_contig106306:107..389Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig106306 108..389 +
1692277469.7579758-CDS-M-pyrifera_M_contig106306:107..3891692277469.7579758-CDS-M-pyrifera_M_contig106306:107..389Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig106306 108..389 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig106306.1365.1prot_M-pyrifera_M_contig106306.1365.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig106306 108..389 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig106306.1365.1

>prot_M-pyrifera_M_contig106306.1365.1 ID=prot_M-pyrifera_M_contig106306.1365.1|Name=mRNA_M-pyrifera_M_contig106306.1365.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=94bp
FDVSNWIWAPRTDIFANGDGAFFWPGAEGPITSIRYETLRDGIEDIELFK
LLTRSTITPLLHTVITNGTNFTQSPQLVMDIRAKIATMAMKSN*
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mRNA from alignment at M-pyrifera_M_contig106306:108..389+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig106306.1365.1 ID=mRNA_M-pyrifera_M_contig106306.1365.1|Name=mRNA_M-pyrifera_M_contig106306.1365.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=282bp|location=Sequence derived from alignment at M-pyrifera_M_contig106306:108..389+ (Macrocystis pyrifera P11B4 male)
TTTGATGTGAGCAATTGGATTTGGGCACCACGAACTGACATCTTTGCGAA TGGAGATGGTGCCTTCTTTTGGCCAGGAGCAGAAGGGCCAATAACTTCTA TTCGGTATGAGACGTTACGAGATGGGATTGAAGACATTGAACTCTTCAAA CTCCTCACTCGTTCCACAATCACCCCACTCCTCCACACAGTCATCACCAA CGGCACCAACTTTACCCAAAGTCCCCAACTTGTCATGGACATCCGAGCCA AGATTGCGACGATGGCAATGAAGTCGAATTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig106306:108..389+

>mRNA_M-pyrifera_M_contig106306.1365.1 ID=mRNA_M-pyrifera_M_contig106306.1365.1|Name=mRNA_M-pyrifera_M_contig106306.1365.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=564bp|location=Sequence derived from alignment at M-pyrifera_M_contig106306:108..389+ (Macrocystis pyrifera P11B4 male)
TTTGATGTGAGCAATTGGATTTGGGCACCACGAACTGACATCTTTGCGAA
TGGAGATGGTGCCTTCTTTTGGCCAGGAGCAGAAGGGCCAATAACTTCTA
TTCGGTATGAGACGTTACGAGATGGGATTGAAGACATTGAACTCTTCAAA
CTCCTCACTCGTTCCACAATCACCCCACTCCTCCACACAGTCATCACCAA
CGGCACCAACTTTACCCAAAGTCCCCAACTTGTCATGGACATCCGAGCCA
AGATTGCGACGATGGCAATGAAGTCGAATTGATTTGATGTGAGCAATTGG
ATTTGGGCACCACGAACTGACATCTTTGCGAATGGAGATGGTGCCTTCTT
TTGGCCAGGAGCAGAAGGGCCAATAACTTCTATTCGGTATGAGACGTTAC
GAGATGGGATTGAAGACATTGAACTCTTCAAACTCCTCACTCGTTCCACA
ATCACCCCACTCCTCCACACAGTCATCACCAACGGCACCAACTTTACCCA
AAGTCCCCAACTTGTCATGGACATCCGAGCCAAGATTGCGACGATGGCAA
TGAAGTCGAATTGA
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