mRNA_M-pyrifera_M_contig106291.1358.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig106291.1358.1
Unique NamemRNA_M-pyrifera_M_contig106291.1358.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig106291.1358.1 vs. uniprot
Match: A0A0G4HYM7_9ALVE (DUF676 domain-containing protein (Fragment) n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4HYM7_9ALVE)

HSP 1 Score: 99.0 bits (245), Expect = 1.340e-23
Identity = 50/102 (49.02%), Postives = 67/102 (65.69%), Query Frame = 1
Query:   16 GLEFFKYVILASSPQDRYAPHHSARVEYCAKSMRDPRFGPHYVAMVDALLGRLDPRRVRRVDVDYSLNRTTLDTMIGRAAHIKFLDSLQLAIMLAVCFRDYF 321
            GL  FK+V L SS QD YAP  SAR+E  +K+ +D +FGP +  M   LLG+++PRR+ R DV+Y +    LDT IGRAAHI+FL++  L  ML  C+   F
Sbjct:  105 GLSEFKFVALVSSWQDNYAPFDSARIEVSSKAAQDAKFGPVFTQMAKNLLGKVNPRRLIRFDVNYKIPEKNLDTFIGRAAHIQFLENQVLMRMLLHCYAPLF 206          
BLAST of mRNA_M-pyrifera_M_contig106291.1358.1 vs. uniprot
Match: A0A7S2Q4E2_9DINO (Hypothetical protein n=1 Tax=Brandtodinium nutricula TaxID=1333877 RepID=A0A7S2Q4E2_9DINO)

HSP 1 Score: 96.3 bits (238), Expect = 2.530e-23
Identity = 47/103 (45.63%), Postives = 69/103 (66.99%), Query Frame = 1
Query:   13 PGLEFFKYVILASSPQDRYAPHHSARVEYCAKSMRDPRFGPHYVAMVDALLGRLDPRRVRRVDVDYSLNRTTLDTMIGRAAHIKFLDSLQLAIMLAVCFRDYF 321
            PGLE F++V+L SS QD Y P+ SAR+E  +++  DP FG  YV MV+ALLGR+ P R+ R+D+++ +  T LDT++GRAAH++  +   L  M    +R  F
Sbjct:   33 PGLERFQHVVLVSSHQDHYVPYESARIEMTSQAETDPHFGGVYVEMVNALLGRIGPERLLRLDLNFHMPETRLDTVMGRAAHVQVTECDMLVQMFVHSYRWLF 135          
BLAST of mRNA_M-pyrifera_M_contig106291.1358.1 vs. uniprot
Match: A0A7S2BP05_9DINO (Hypothetical protein (Fragment) n=1 Tax=Alexandrium andersonii TaxID=327968 RepID=A0A7S2BP05_9DINO)

HSP 1 Score: 93.2 bits (230), Expect = 9.370e-22
Identity = 47/95 (49.47%), Postives = 63/95 (66.32%), Query Frame = 1
Query:   13 PGLEFFKYVILASSPQDRYAPHHSARVEYCAKSMRDPRFGPHYVAMVDALLGRLDPRRVRRVDVDYSLNRTTLDTMIGRAAHIKFLDSLQLAIML 297
            PGLE F+++ILASS QD YAP  SAR+E    +  DP+ GP Y  M+  LLG L   RV R+DVD+ +  T +D +IGR AHI+F++S  L  M+
Sbjct:   65 PGLEHFQHIILASSHQDNYAPFESARIEMPRVAEADPKLGPCYAKMLRNLLGPLKAERVIRMDVDFHIPETNIDAVIGRTAHIQFIESQALMKMI 159          
BLAST of mRNA_M-pyrifera_M_contig106291.1358.1 vs. uniprot
Match: X6NHY6_RETFI (DUF676 domain-containing protein (Fragment) n=1 Tax=Reticulomyxa filosa TaxID=46433 RepID=X6NHY6_RETFI)

HSP 1 Score: 89.7 bits (221), Expect = 1.160e-18
Identity = 46/103 (44.66%), Postives = 66/103 (64.08%), Query Frame = 1
Query:   13 PGLEFFKYVILASSPQDRYAPHHSARVEYCAKSMRDPRFGPHYVAMVDALLGRLDPRRVRRVDVDYSLNRTTLDTMIGRAAHIKFLDSLQLAIMLAVCFRDYF 321
            PGL++FK V+L SSP+DRY P+HS R+E   K+++D ++G  Y  MV  LL  LD  ++ R DV +  ++  LD+MIGR AHI FL+      ML   ++ YF
Sbjct:  384 PGLQYFKNVLLVSSPEDRYTPYHSTRIEMHRKTVQDTKWGRIYNDMVRNLLRPLDHVQLTRFDVSFVNHKINLDSMIGRTAHICFLEQPLYIDMLIYVYKQYF 486          
BLAST of mRNA_M-pyrifera_M_contig106291.1358.1 vs. uniprot
Match: J9J0C7_9SPIT (DUF676 domain containing protein n=2 Tax=Oxytricha trifallax TaxID=1172189 RepID=J9J0C7_9SPIT)

HSP 1 Score: 89.4 bits (220), Expect = 1.680e-18
Identity = 42/103 (40.78%), Postives = 70/103 (67.96%), Query Frame = 1
Query:   16 GLEFFKYVILASSPQDRYAPHHSARVEYCAKSMRDPRFGPHYVAMVDALLGRLDPRRVRRVDVDYSLNRTTLDTMIGRAAHIKFLDSLQLAIMLAVCFRDYFA 324
            GLE+FK++IL SS QD+YAP  SAR++ C+ + +D   G  Y+ MV+ L+  +    + R+DV++ +  T LD++IGR AHI FL++ +L  M+   ++D+F+
Sbjct:  786 GLEWFKHIILVSSFQDQYAPFDSARIQICSDAAKDISKGNVYIQMVNNLMKDVSAEVLYRIDVNFQIQETNLDSLIGRTAHILFLENEELMKMIVSRYKDFFS 888          
BLAST of mRNA_M-pyrifera_M_contig106291.1358.1 vs. uniprot
Match: A0A7S1F304_NOCSC (Hypothetical protein (Fragment) n=1 Tax=Noctiluca scintillans TaxID=2966 RepID=A0A7S1F304_NOCSC)

HSP 1 Score: 88.2 bits (217), Expect = 4.210e-18
Identity = 45/94 (47.87%), Postives = 63/94 (67.02%), Query Frame = 1
Query:   16 GLEFFKYVILASSPQDRYAPHHSARVEYCAKSMRDPRFGPHYVAMVDALLGRLDPRRVRRVDVDYSLNRTTLDTMIGRAAHIKFLDSLQLAIML 297
            GLE F+ V+LASS QD+YAP  SAR+E  + ++ D +FG HY  M  ++L  LD  R+ R +V++ +  T LDT+IGRAAHI F++   L  ML
Sbjct:  624 GLEHFQSVVLASSFQDQYAPFESARIEISSIAIADAKFGQHYSEMARSILEPLDAERIIRFNVNFHIPETNLDTVIGRAAHIHFIECQHLMQML 717          
BLAST of mRNA_M-pyrifera_M_contig106291.1358.1 vs. uniprot
Match: A0A8J8P2A0_HALGN (DUF676 domain-containing protein n=1 Tax=Halteria grandinella TaxID=5974 RepID=A0A8J8P2A0_HALGN)

HSP 1 Score: 88.2 bits (217), Expect = 4.310e-18
Identity = 42/103 (40.78%), Postives = 70/103 (67.96%), Query Frame = 1
Query:   16 GLEFFKYVILASSPQDRYAPHHSARVEYCAKSMRDPRFGPHYVAMVDALLGRLDPRRVRRVDVDYSLNRTTLDTMIGRAAHIKFLDSLQLAIMLAVCFRDYFA 324
            GL +FK++IL SS QD+YAP  SAR++ C+ + +DP  G  Y+ MV+ LL R+    + R+DV++ +  T +D++IGR AHI  L+S +L  M+   ++++F+
Sbjct:  901 GLNWFKHIILVSSFQDQYAPFDSARIQICSDAAKDPVKGNTYIQMVNNLLSRVPIDVLYRLDVNFQIQETNIDSIIGRTAHILVLESEELMRMIVSRYKEFFS 1003          
BLAST of mRNA_M-pyrifera_M_contig106291.1358.1 vs. uniprot
Match: Q23QE7_TETTS (Serine esterase, putative n=1 Tax=Tetrahymena thermophila (strain SB210) TaxID=312017 RepID=Q23QE7_TETTS)

HSP 1 Score: 87.8 bits (216), Expect = 5.810e-18
Identity = 48/108 (44.44%), Postives = 70/108 (64.81%), Query Frame = 1
Query:   13 PGLEFFKYVILASSPQDRYAPHHSARVEYCAKSMRDPRFGPHYVAMVDALLGRLDPRRVRRVDVDYSL--NRT---TLDTMIGRAAHIKFLDSLQLAIMLAVCFRDYF 321
            PGL +F+ + L SS QD+Y P  SAR++ C ++  + + G  Y +MVD LLG+L   R+ R+DV++ +  N+T   T+D MIGR+AHI+FL+S  LA  L  CF   F
Sbjct:  717 PGLNWFRNIALLSSYQDQYVPFESARIQKCDEASNENQKGRIYNSMVDNLLGQLRTDRIHRIDVNFKIKDNKTIKKTIDNMIGRSAHIQFLESDALAKTLVYCFDHLF 824          
BLAST of mRNA_M-pyrifera_M_contig106291.1358.1 vs. uniprot
Match: A0A078B3F0_STYLE (Duf676 domain containing protein n=1 Tax=Stylonychia lemnae TaxID=5949 RepID=A0A078B3F0_STYLE)

HSP 1 Score: 86.3 bits (212), Expect = 2.030e-17
Identity = 42/103 (40.78%), Postives = 68/103 (66.02%), Query Frame = 1
Query:   16 GLEFFKYVILASSPQDRYAPHHSARVEYCAKSMRDPRFGPHYVAMVDALLGRLDPRRVRRVDVDYSLNRTTLDTMIGRAAHIKFLDSLQLAIMLAVCFRDYFA 324
            G E+FK++IL SS QD+YAP  SAR++ C+ + +D   G  Y+ MV+ L+  +    + R+DV++ +  T LD++IGR AHI FL++ +L  M    F+D+F+
Sbjct:  801 GFEWFKHIILVSSFQDQYAPFDSARIQICSDAAKDIAKGNIYIQMVNNLMRDVKADVLYRLDVNFQIQETNLDSLIGRTAHILFLENEELMKMFVSRFKDFFS 903          
BLAST of mRNA_M-pyrifera_M_contig106291.1358.1 vs. uniprot
Match: A0A8C8IBH8_ONCTS (DUF676 domain-containing protein n=1 Tax=Oncorhynchus tshawytscha TaxID=74940 RepID=A0A8C8IBH8_ONCTS)

HSP 1 Score: 82.8 bits (203), Expect = 2.810e-17
Identity = 51/108 (47.22%), Postives = 68/108 (62.96%), Query Frame = 1
Query:   13 PGLEFFKYVILASSPQDRYAPHHSARVEYCAKSMRDPRFGPHYVAMVDALL----GRLDPRRVRRVDVDYSLNRTTLDTMIGRAAHIKFLDS-LQLAIMLAVCFRDYF 321
            PGL+FFK V+L +SPQDRY P HSAR+E C  +++D   GP Y  M++ LL    G  D R +R+ +V ++L  T  +T+IGRAAHI  LDS L L     V   +YF
Sbjct:  108 PGLQFFKNVVLVASPQDRYVPFHSARIEMCRTALKDRTTGPVYTEMINNLLQPLVGSKDCRLIRQ-NVFHALPNTA-NTLIGRAAHIAVLDSELFLEKFFLVAGLNYF 213          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig106291.1358.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0G4HYM7_9ALVE1.340e-2349.02DUF676 domain-containing protein (Fragment) n=1 Ta... [more]
A0A7S2Q4E2_9DINO2.530e-2345.63Hypothetical protein n=1 Tax=Brandtodinium nutricu... [more]
A0A7S2BP05_9DINO9.370e-2249.47Hypothetical protein (Fragment) n=1 Tax=Alexandriu... [more]
X6NHY6_RETFI1.160e-1844.66DUF676 domain-containing protein (Fragment) n=1 Ta... [more]
J9J0C7_9SPIT1.680e-1840.78DUF676 domain containing protein n=2 Tax=Oxytricha... [more]
A0A7S1F304_NOCSC4.210e-1847.87Hypothetical protein (Fragment) n=1 Tax=Noctiluca ... [more]
A0A8J8P2A0_HALGN4.310e-1840.78DUF676 domain-containing protein n=1 Tax=Halteria ... [more]
Q23QE7_TETTS5.810e-1844.44Serine esterase, putative n=1 Tax=Tetrahymena ther... [more]
A0A078B3F0_STYLE2.030e-1740.78Duf676 domain containing protein n=1 Tax=Stylonych... [more]
A0A8C8IBH8_ONCTS2.810e-1747.22DUF676 domain-containing protein n=1 Tax=Oncorhync... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig106291contigM-pyrifera_M_contig106291:13..401 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score87.8
Seed ortholog evalue3.4e-15
Seed eggNOG ortholog5911.EAR98750
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004856,GO:0005975,GO:0005996,GO:0005997,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019200,GO:0019321,GO:0044237,GO:0044238,GO:0044262,GO:0044281,GO:0046835,GO:0071704
EggNOG free text desc.Protein FAM135
EggNOG OGs3ZANQ@5878,KOG2205@1,KOG2205@2759
COG Functional cat.S
Best tax levelCiliophora
Best eggNOG OGNA|NA|NA
Exons2
Model size327
Cds size327
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815572.852558-CDS-M-pyrifera_M_contig106291:12..2251622815572.852558-CDS-M-pyrifera_M_contig106291:12..225Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig106291 13..225 +
1692277469.6455216-CDS-M-pyrifera_M_contig106291:12..2251692277469.6455216-CDS-M-pyrifera_M_contig106291:12..225Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig106291 13..225 +
1622815572.8628137-CDS-M-pyrifera_M_contig106291:287..4011622815572.8628137-CDS-M-pyrifera_M_contig106291:287..401Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig106291 288..401 +
1692277469.6568615-CDS-M-pyrifera_M_contig106291:287..4011692277469.6568615-CDS-M-pyrifera_M_contig106291:287..401Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig106291 288..401 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig106291.1358.1prot_M-pyrifera_M_contig106291.1358.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig106291 13..401 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig106291.1358.1

>prot_M-pyrifera_M_contig106291.1358.1 ID=prot_M-pyrifera_M_contig106291.1358.1|Name=mRNA_M-pyrifera_M_contig106291.1358.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=109bp
LPSPPGLEFFKYVILASSPQDRYAPHHSARVEYCAKSMRDPRFGPHYVAM
VDALLGRLDPRRVRRVDVDYSLNRTTLDTMIGRAAHIKFLDSLQLAIMLA
VCFRDYFA*
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mRNA from alignment at M-pyrifera_M_contig106291:13..401+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig106291.1358.1 ID=mRNA_M-pyrifera_M_contig106291.1358.1|Name=mRNA_M-pyrifera_M_contig106291.1358.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=389bp|location=Sequence derived from alignment at M-pyrifera_M_contig106291:13..401+ (Macrocystis pyrifera P11B4 male)
CTTCCTTCCCCGCCAGGCCTCGAGTTCTTCAAGTACGTCATCCTCGCGTC GTCGCCGCAGGACAGGTACGCGCCACACCACTCGGCGCGCGTGGAGTACT GCGCCAAGAGCATGCGTGACCCGCGGTTCGGACCGCACTACGTGGCCATG GTGGACGCGCTGCTGGGCAGGCTGGACCCGCGCAGAGTCCGCAGAGTCGA TGTTGATTATTCGGTACGTGTACACACACGCTTCCCCCCATCCCACGCAC ACATGCTCACGGTGTTCTGCTGCAGCTGAACAGGACAACGCTGGACACCA TGATCGGCCGTGCGGCACACATCAAGTTCCTCGACTCGCTGCAGTTGGCC ATCATGCTCGCAGTGTGCTTCAGAGACTACTTCGCATAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig106291:13..401+

>mRNA_M-pyrifera_M_contig106291.1358.1 ID=mRNA_M-pyrifera_M_contig106291.1358.1|Name=mRNA_M-pyrifera_M_contig106291.1358.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=654bp|location=Sequence derived from alignment at M-pyrifera_M_contig106291:13..401+ (Macrocystis pyrifera P11B4 male)
CTTCCTTCCCCGCCAGGCCTCGAGTTCTTCAAGTACGTCATCCTCGCGTC
GTCGCCGCAGGACAGGTACGCGCCACACCACTCGGCGCGCGTGGAGTACT
GCGCCAAGAGCATGCGTGACCCGCGGTTCGGACCGCACTACGTGGCCATG
GTGGACGCGCTGCTGGGCAGGCTGGACCCGCGCAGAGTCCGCAGAGTCGA
TGTTGATTATTCGCTTCCTTCCCCGCCAGGCCTCGAGTTCTTCAAGTACG
TCATCCTCGCGTCGTCGCCGCAGGACAGGTACGCGCCACACCACTCGGCG
CGCGTGGAGTACTGCGCCAAGAGCATGCGTGACCCGCGGTTCGGACCGCA
CTACGTGGCCATGGTGGACGCGCTGCTGGGCAGGCTGGACCCGCGCAGAG
TCCGCAGAGTCGATGTTGATTATTCGCTGAACAGGACAACGCTGGACACC
ATGATCGGCCGTGCGGCACACATCAAGTTCCTCGACTCGCTGCAGTTGGC
CATCATGCTCGCAGTGTGCTTCAGAGACTACTTCGCATAGCTGAACAGGA
CAACGCTGGACACCATGATCGGCCGTGCGGCACACATCAAGTTCCTCGAC
TCGCTGCAGTTGGCCATCATGCTCGCAGTGTGCTTCAGAGACTACTTCGC
ATAG
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