mRNA_M-pyrifera_M_contig106290.1357.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig106290.1357.1
Unique NamemRNA_M-pyrifera_M_contig106290.1357.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig106290.1357.1 vs. uniprot
Match: UPI000A2A6193 (U3 small nucleolar ribonucleoprotein protein IMP4 n=1 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI000A2A6193)

HSP 1 Score: 199 bits (505), Expect = 1.640e-61
Identity = 87/127 (68.50%), Postives = 111/127 (87.40%), Query Frame = 1 
Query:    1 KVGLSHLDDEYSRAGVEDPKVFITTARDPSSRLQQFAKELKLVFPNSQRMNRGNHVVGTIVETCRSKGVTDVIIVHEHRGEPNGLIVCHLPFGPTAYFTLSNCVMRHDIANSAPVSQGYPHLIFDNF 381
            +VG SH+DDEY+ AGVEDPK+ ITT+  PSSRL+QFAKE+KL+FPNSQR+NRGN+V+  +V+ C++ GVTD+++VHEHRGEP+GL+VCHLPFGPTAYFTLSN VMRHDI  +  +S+ +PHLIF NF
Sbjct:   66 RVG-SHIDDEYAWAGVEDPKIMITTSHSPSSRLKQFAKEIKLIFPNSQRLNRGNYVMSQLVQACKANGVTDLVVVHEHRGEPDGLVVCHLPFGPTAYFTLSNTVMRHDIPKTGTMSEAFPHLIFHNF 191
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BLAST of mRNA_M-pyrifera_M_contig106290.1357.1 vs. uniprot
Match: A0A6P8J0K3_ACTTE (U3 small nucleolar ribonucleoprotein protein IMP4-like n=1 Tax=Actinia tenebrosa TaxID=6105 RepID=A0A6P8J0K3_ACTTE)

HSP 1 Score: 197 bits (501), Expect = 6.400e-61
Identity = 87/123 (70.73%), Postives = 108/123 (87.80%), Query Frame = 1 
Query:   13 SHLDDEYSRAGVEDPKVFITTARDPSSRLQQFAKELKLVFPNSQRMNRGNHVVGTIVETCRSKGVTDVIIVHEHRGEPNGLIVCHLPFGPTAYFTLSNCVMRHDIANSAPVSQGYPHLIFDNF 381
            SH+DDEY+ +GVEDPKV ITT+  PSSRL+QFAKE+KL+FPNSQR+NRGN+V+  +V+ C++  VTD+IIVHEHRGEP+GL+VCHLPFGPTAYFTLSN VMRHDI  +A +S+ YPHL+F NF
Sbjct:   69 SHVDDEYAWSGVEDPKVMITTSHSPSSRLKQFAKEVKLIFPNSQRLNRGNYVMSQLVQACKANDVTDLIIVHEHRGEPDGLVVCHLPFGPTAYFTLSNTVMRHDIPKTANMSEAYPHLVFHNF 191
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BLAST of mRNA_M-pyrifera_M_contig106290.1357.1 vs. uniprot
Match: H3ARL2_LATCH (Brix domain-containing protein n=2 Tax=Latimeria chalumnae TaxID=7897 RepID=H3ARL2_LATCH)

HSP 1 Score: 196 bits (498), Expect = 1.930e-60
Identity = 87/123 (70.73%), Postives = 104/123 (84.55%), Query Frame = 1 
Query:   13 SHLDDEYSRAGVEDPKVFITTARDPSSRLQQFAKELKLVFPNSQRMNRGNHVVGTIVETCRSKGVTDVIIVHEHRGEPNGLIVCHLPFGPTAYFTLSNCVMRHDIANSAPVSQGYPHLIFDNF 381
            SH+DDEY  AGVEDPK+ ITT+RDPSSRL+ FAKE+KL+FPNSQRMNRGNH VGT+V  C++  VTD++I+HEHRG P+G+ VCHLPFGPTAYFTL N VMRHDI +   +S+ YPHLIF NF
Sbjct:   69 SHIDDEYKWAGVEDPKIMITTSRDPSSRLKMFAKEMKLIFPNSQRMNRGNHDVGTLVRACKANEVTDLVIIHEHRGVPDGMQVCHLPFGPTAYFTLCNVVMRHDIPDIGTMSEAYPHLIFHNF 191
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BLAST of mRNA_M-pyrifera_M_contig106290.1357.1 vs. uniprot
Match: A7RT92_NEMVE (Predicted protein n=1 Tax=Nematostella vectensis TaxID=45351 RepID=A7RT92_NEMVE)

HSP 1 Score: 195 bits (496), Expect = 3.650e-60
Identity = 89/127 (70.08%), Postives = 110/127 (86.61%), Query Frame = 1 
Query:    1 KVGLSHLDDEYSRAGVEDPKVFITTARDPSSRLQQFAKELKLVFPNSQRMNRGNHVVGTIVETCRSKGVTDVIIVHEHRGEPNGLIVCHLPFGPTAYFTLSNCVMRHDIANSAPVSQGYPHLIFDNF 381
            KVG SH+DDEY+ AGVEDPK+ ITT+ +PSSRL+QFAKE++LVFPNSQR+NRGN+V+  +V+ C++  VTD+IIVHEHRGEP+GL+VCHLPFGPTAYFTLS+ VMRHDI     +S+ YPHLIF NF
Sbjct:   66 KVG-SHIDDEYAWAGVEDPKIMITTSHNPSSRLKQFAKEMRLVFPNSQRLNRGNYVMKQLVDACKANDVTDLIIVHEHRGEPDGLVVCHLPFGPTAYFTLSSTVMRHDIPKIGTMSEAYPHLIFHNF 191
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BLAST of mRNA_M-pyrifera_M_contig106290.1357.1 vs. uniprot
Match: A0A1Y1Y4Y9_9FUNG (Brix-domain-containing protein n=1 Tax=Basidiobolus meristosporus CBS 931.73 TaxID=1314790 RepID=A0A1Y1Y4Y9_9FUNG)

HSP 1 Score: 195 bits (495), Expect = 4.740e-60
Identity = 83/123 (67.48%), Postives = 109/123 (88.62%), Query Frame = 1 
Query:   13 SHLDDEYSRAGVEDPKVFITTARDPSSRLQQFAKELKLVFPNSQRMNRGNHVVGTIVETCRSKGVTDVIIVHEHRGEPNGLIVCHLPFGPTAYFTLSNCVMRHDIANSAPVSQGYPHLIFDNF 381
            +H+DDEY+RAGV+DPK+ ITT+RDPSSRLQQFAKE++LVFPNSQR+NRGN+V+  +V+ C++  VTD+II+HEHRGEP+G+IVCH P+GPTAYFTL N V+RHD+ +   VS+ +PHLIF+NF
Sbjct:   68 THVDDEYARAGVQDPKIMITTSRDPSSRLQQFAKEMRLVFPNSQRINRGNYVMSEVVDACKANEVTDLIILHEHRGEPDGMIVCHFPYGPTAYFTLYNTVLRHDLKDQGTVSEAFPHLIFNNF 190
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BLAST of mRNA_M-pyrifera_M_contig106290.1357.1 vs. uniprot
Match: A0A8C4SDM1_ERPCA (IMP U3 small nucleolar ribonucleoprotein 4 n=4 Tax=Polypteridae TaxID=8289 RepID=A0A8C4SDM1_ERPCA)

HSP 1 Score: 195 bits (495), Expect = 5.480e-60
Identity = 86/123 (69.92%), Postives = 105/123 (85.37%), Query Frame = 1 
Query:   13 SHLDDEYSRAGVEDPKVFITTARDPSSRLQQFAKELKLVFPNSQRMNRGNHVVGTIVETCRSKGVTDVIIVHEHRGEPNGLIVCHLPFGPTAYFTLSNCVMRHDIANSAPVSQGYPHLIFDNF 381
            SH+DDEY  AGVEDPK+ ITT+R+PSSRL+ FAKE+KL+FPNSQRMNRG H VG +V+ C++  VTD+II+HEHRG+P+G+IVCHLPFGPTAYFTL N VMRHDI +   +S+ YPHLIF NF
Sbjct:   69 SHIDDEYKWAGVEDPKIMITTSREPSSRLKMFAKEVKLIFPNSQRMNRGKHEVGALVQACKANDVTDLIIMHEHRGQPDGMIVCHLPFGPTAYFTLYNVVMRHDIPDIGTMSEAYPHLIFHNF 191
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BLAST of mRNA_M-pyrifera_M_contig106290.1357.1 vs. uniprot
Match: A0A261XVR9_9FUNG (U3 small nucleolar ribonucleoprotein IMP4 n=1 Tax=Bifiguratus adelaidae TaxID=1938954 RepID=A0A261XVR9_9FUNG)

HSP 1 Score: 194 bits (494), Expect = 6.710e-60
Identity = 83/123 (67.48%), Postives = 108/123 (87.80%), Query Frame = 1 
Query:   13 SHLDDEYSRAGVEDPKVFITTARDPSSRLQQFAKELKLVFPNSQRMNRGNHVVGTIVETCRSKGVTDVIIVHEHRGEPNGLIVCHLPFGPTAYFTLSNCVMRHDIANSAPVSQGYPHLIFDNF 381
            +H+DDEY+RAGV DPK+ ITT+RDPSSRLQQF+KE++LVFPNSQR+NRGNHV+  IV+ C++  VTD+II+HEHRG+P+G++VCH P+GPTAYF+L N V+RHDI +   VS+ YPHLIF+NF
Sbjct:   68 THVDDEYARAGVSDPKILITTSRDPSSRLQQFSKEMRLVFPNSQRINRGNHVMKEIVDACKANEVTDLIILHEHRGQPDGMVVCHFPYGPTAYFSLHNVVLRHDIKDQGTVSEAYPHLIFNNF 190
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BLAST of mRNA_M-pyrifera_M_contig106290.1357.1 vs. uniprot
Match: A0A163JF22_ABSGL (Brix domain-containing protein n=1 Tax=Absidia glauca TaxID=4829 RepID=A0A163JF22_ABSGL)

HSP 1 Score: 194 bits (494), Expect = 7.990e-60
Identity = 85/123 (69.11%), Postives = 107/123 (86.99%), Query Frame = 1 
Query:   13 SHLDDEYSRAGVEDPKVFITTARDPSSRLQQFAKELKLVFPNSQRMNRGNHVVGTIVETCRSKGVTDVIIVHEHRGEPNGLIVCHLPFGPTAYFTLSNCVMRHDIANSAPVSQGYPHLIFDNF 381
            +H DDEYSRAGV DPK+ ITT+RDPSSRLQQF+KE++LVFPNSQR+NRGNHV+  IVE CR+  V+D+II+HEHRG+P+G++VCH P+GPTAYF+L N V+RHDI +   VS+ +PHLIFDNF
Sbjct:   68 THADDEYSRAGVFDPKILITTSRDPSSRLQQFSKEMRLVFPNSQRINRGNHVMKEIVEACRTNEVSDLIILHEHRGKPDGMVVCHFPYGPTAYFSLHNVVLRHDIKDQGTVSEAFPHLIFDNF 190
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BLAST of mRNA_M-pyrifera_M_contig106290.1357.1 vs. uniprot
Match: A0A6H5JVA1_9PHAE (Brix domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVA1_9PHAE)

HSP 1 Score: 190 bits (483), Expect = 1.570e-59
Identity = 88/123 (71.54%), Postives = 104/123 (84.55%), Query Frame = 1 
Query:   13 SHLDDEYSRAGVEDPKVFITTARDPSSRLQQFAKELKLVFPNSQRMNRGNHVVGTIVETCRSKGVTDVIIVHEHRGEPNGLIVCHLPFGPTAYFTLSNCVMRHDIANSAPVSQGYPHLIFDNF 381
            S +DDEY++AGV DPKV +TT+RDPSSRL+QFAKELKLV PN+QR+NRGNH VG +V  CRS   TD+I+V E RGEP+GLIVCHLP GPTA+FTLSNCV+RHDIA+   VS+ YPHLIFD F
Sbjct:   31 SSIDDEYAQAGVRDPKVCVTTSRDPSSRLKQFAKELKLVVPNAQRINRGNHKVGELVGACRSSEFTDMIVVQETRGEPDGLIVCHLPLGPTAFFTLSNCVLRHDIADRGTVSEVYPHLIFDKF 153
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BLAST of mRNA_M-pyrifera_M_contig106290.1357.1 vs. uniprot
Match: A0A1Y1V705_9FUNG (Brix-domain-containing protein n=4 Tax=Neocallimastigaceae TaxID=29007 RepID=A0A1Y1V705_9FUNG)

HSP 1 Score: 193 bits (491), Expect = 1.850e-59
Identity = 84/123 (68.29%), Postives = 107/123 (86.99%), Query Frame = 1 
Query:   13 SHLDDEYSRAGVEDPKVFITTARDPSSRLQQFAKELKLVFPNSQRMNRGNHVVGTIVETCRSKGVTDVIIVHEHRGEPNGLIVCHLPFGPTAYFTLSNCVMRHDIANSAPVSQGYPHLIFDNF 381
            +H+DDEY++AGV DPKV ITT+RDPSSRLQQFAKE+KL+FPNSQR+NRGN+V+  +V  C+S  VTD+II+HEHRG+P+G+IV H P+GPTAYFTLSN ++RHDI +   VS+ YPHLIF+NF
Sbjct:   68 THIDDEYAQAGVHDPKVLITTSRDPSSRLQQFAKEMKLIFPNSQRINRGNYVIKDVVNACKSNEVTDLIILHEHRGQPDGMIVSHFPYGPTAYFTLSNVILRHDIPDRGTVSEAYPHLIFNNF 190
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig106290.1357.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI000A2A61931.640e-6168.50U3 small nucleolar ribonucleoprotein protein IMP4 ... [more]
A0A6P8J0K3_ACTTE6.400e-6170.73U3 small nucleolar ribonucleoprotein protein IMP4-... [more]
H3ARL2_LATCH1.930e-6070.73Brix domain-containing protein n=2 Tax=Latimeria c... [more]
A7RT92_NEMVE3.650e-6070.08Predicted protein n=1 Tax=Nematostella vectensis T... [more]
A0A1Y1Y4Y9_9FUNG4.740e-6067.48Brix-domain-containing protein n=1 Tax=Basidiobolu... [more]
A0A8C4SDM1_ERPCA5.480e-6069.92IMP U3 small nucleolar ribonucleoprotein 4 n=4 Tax... [more]
A0A261XVR9_9FUNG6.710e-6067.48U3 small nucleolar ribonucleoprotein IMP4 n=1 Tax=... [more]
A0A163JF22_ABSGL7.990e-6069.11Brix domain-containing protein n=1 Tax=Absidia gla... [more]
A0A6H5JVA1_9PHAE1.570e-5971.54Brix domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A1Y1V705_9FUNG1.850e-5968.29Brix-domain-containing protein n=4 Tax=Neocallimas... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig106290contigM-pyrifera_M_contig106290:248..628 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score197.2
Seed ortholog evalue4.6e-48
Seed eggNOG ortholog7897.ENSLACP00000012283
Preferred nameIMP4
KEGG koko:K14561
KEGG Pathwayko03008,map03008
Hectar predicted targeting categoryother localisation
GOsGO:0001650,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0019843,GO:0022613,GO:0030515,GO:0030684,GO:0030686,GO:0031974,GO:0031981,GO:0032040,GO:0032991,GO:0034457,GO:0034470,GO:0034641,GO:0034660,GO:0042134,GO:0042254,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044452,GO:0044464,GO:0046483,GO:0070013,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1990904
EggNOG free text desc.rRNA primary transcript binding
EggNOG OGs38EP3@33154,3BHHD@33208,3CWFH@33213,4835S@7711,493CV@7742,COG2136@1,KOG2781@2759
COG Functional cat.AJ
Best tax levelVertebrata
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03009
Exons1
Model size381
Cds size381
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815572.818132-CDS-M-pyrifera_M_contig106290:247..6281622815572.818132-CDS-M-pyrifera_M_contig106290:247..628Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig106290 248..628 +
1692277469.6326892-CDS-M-pyrifera_M_contig106290:247..6281692277469.6326892-CDS-M-pyrifera_M_contig106290:247..628Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig106290 248..628 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig106290.1357.1prot_M-pyrifera_M_contig106290.1357.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig106290 248..628 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig106290.1357.1

>prot_M-pyrifera_M_contig106290.1357.1 ID=prot_M-pyrifera_M_contig106290.1357.1|Name=mRNA_M-pyrifera_M_contig106290.1357.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=127bp
KVGLSHLDDEYSRAGVEDPKVFITTARDPSSRLQQFAKELKLVFPNSQRM
NRGNHVVGTIVETCRSKGVTDVIIVHEHRGEPNGLIVCHLPFGPTAYFTL
SNCVMRHDIANSAPVSQGYPHLIFDNF
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mRNA from alignment at M-pyrifera_M_contig106290:248..628+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig106290.1357.1 ID=mRNA_M-pyrifera_M_contig106290.1357.1|Name=mRNA_M-pyrifera_M_contig106290.1357.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=381bp|location=Sequence derived from alignment at M-pyrifera_M_contig106290:248..628+ (Macrocystis pyrifera P11B4 male)
AAAGTGGGCCTGTCACACCTGGACGACGAATACTCGAGGGCTGGAGTGGA
GGACCCAAAGGTATTCATCACCACTGCACGCGACCCCAGCTCCCGCCTGC
AGCAGTTTGCAAAGGAACTCAAGTTGGTCTTCCCCAACAGCCAGAGGATG
AACAGAGGTAACCACGTGGTCGGGACCATCGTCGAGACGTGCAGGAGCAA
GGGTGTGACGGACGTCATCATCGTGCACGAGCACCGTGGCGAGCCCAATG
GCCTCATTGTCTGTCACCTTCCCTTTGGACCGACCGCATACTTCACTCTC
TCCAACTGTGTTATGCGCCACGACATTGCCAACAGTGCGCCTGTCTCGCA
AGGCTACCCCCACCTCATCTTCGATAATTTC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig106290:248..628+

>mRNA_M-pyrifera_M_contig106290.1357.1 ID=mRNA_M-pyrifera_M_contig106290.1357.1|Name=mRNA_M-pyrifera_M_contig106290.1357.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=762bp|location=Sequence derived from alignment at M-pyrifera_M_contig106290:248..628+ (Macrocystis pyrifera P11B4 male)
AAAGTGGGCCTGTCACACCTGGACGACGAATACTCGAGGGCTGGAGTGGA
GGACCCAAAGGTATTCATCACCACTGCACGCGACCCCAGCTCCCGCCTGC
AGCAGTTTGCAAAGGAACTCAAGTTGGTCTTCCCCAACAGCCAGAGGATG
AACAGAGGTAACCACGTGGTCGGGACCATCGTCGAGACGTGCAGGAGCAA
GGGTGTGACGGACGTCATCATCGTGCACGAGCACCGTGGCGAGCCCAATG
GCCTCATTGTCTGTCACCTTCCCTTTGGACCGACCGCATACTTCACTCTC
TCCAACTGTGTTATGCGCCACGACATTGCCAACAGTGCGCCTGTCTCGCA
AGGCTACCCCCACCTCATCTTCGATAATTTCAAAGTGGGCCTGTCACACC
TGGACGACGAATACTCGAGGGCTGGAGTGGAGGACCCAAAGGTATTCATC
ACCACTGCACGCGACCCCAGCTCCCGCCTGCAGCAGTTTGCAAAGGAACT
CAAGTTGGTCTTCCCCAACAGCCAGAGGATGAACAGAGGTAACCACGTGG
TCGGGACCATCGTCGAGACGTGCAGGAGCAAGGGTGTGACGGACGTCATC
ATCGTGCACGAGCACCGTGGCGAGCCCAATGGCCTCATTGTCTGTCACCT
TCCCTTTGGACCGACCGCATACTTCACTCTCTCCAACTGTGTTATGCGCC
ACGACATTGCCAACAGTGCGCCTGTCTCGCAAGGCTACCCCCACCTCATC
TTCGATAATTTC
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