mRNA_M-pyrifera_M_contig10629.1356.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig10629.1356.1
Unique NamemRNA_M-pyrifera_M_contig10629.1356.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig10629.1356.1 vs. uniprot
Match: A0A6H5KKN7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKN7_9PHAE)

HSP 1 Score: 122 bits (307), Expect = 7.390e-31
Identity = 52/65 (80.00%), Postives = 57/65 (87.69%), Query Frame = 1 
Query:    1 PQQTILTDYLPGNPYSDLIQPVWCSYLIGARGVTVVSPDGKIFFQRGWFHSEHTALAIDKYWCEQ 195
            P Q IL DYLPGNPYS+LIQPVWCSY +GAR VTVVSPDGK+FFQRGWFHSEH   AID+YWC+Q
Sbjct:  322 PSQDILVDYLPGNPYSELIQPVWCSYSMGARPVTVVSPDGKLFFQRGWFHSEHVGRAIDEYWCQQ 386
[Close]
BLAST of mRNA_M-pyrifera_M_contig10629.1356.1 vs. uniprot
Match: D8LCJ3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCJ3_ECTSI)

HSP 1 Score: 120 bits (301), Expect = 2.530e-30
Identity = 51/65 (78.46%), Postives = 56/65 (86.15%), Query Frame = 1 
Query:    1 PQQTILTDYLPGNPYSDLIQPVWCSYLIGARGVTVVSPDGKIFFQRGWFHSEHTALAIDKYWCEQ 195
            P Q IL DYLPGNPYS+LIQPVWCSY +GAR VTVVSPDGK+FFQR WFHSEH   AID+YWC+Q
Sbjct:  292 PSQDILVDYLPGNPYSELIQPVWCSYSMGARPVTVVSPDGKLFFQRAWFHSEHVGRAIDEYWCQQ 356
[Close]
BLAST of mRNA_M-pyrifera_M_contig10629.1356.1 vs. uniprot
Match: A0A6H5L0M4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0M4_9PHAE)

HSP 1 Score: 81.6 bits (200), Expect = 1.830e-16
Identity = 33/61 (54.10%), Postives = 44/61 (72.13%), Query Frame = 1 
Query:    1 PQQTILTDYLPGNPYSDLIQPVWCSYLIGARGVTVVSPDGKIFFQRGWFHSEHTALAIDKY 183
            P+Q I+ DY+PGNPYSDLI P+WCSY IGAR  T ++ DG IF+Q+ W H+   A  +D +
Sbjct:  201 PEQAIIPDYMPGNPYSDLINPLWCSYGIGARPATAIAQDGTIFYQQEWLHTGDLANELDVF 261
[Close]
BLAST of mRNA_M-pyrifera_M_contig10629.1356.1 vs. uniprot
Match: D7FZ87_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ87_ECTSI)

HSP 1 Score: 75.1 bits (183), Expect = 1.400e-15
Identity = 29/59 (49.15%), Postives = 42/59 (71.19%), Query Frame = 1 
Query:    7 QTILTDYLPGNPYSDLIQPVWCSYLIGARGVTVVSPDGKIFFQRGWFHSEHTALAIDKY 183
            Q ++ DY+PGNPYS+LI P+WCSY +GAR  T ++ DG IF+Q+ W H+   A  +D +
Sbjct:    3 QALIPDYMPGNPYSELINPLWCSYGLGARPATAIAQDGTIFYQQEWLHTGDLADELDVF 61
[Close]
BLAST of mRNA_M-pyrifera_M_contig10629.1356.1 vs. uniprot
Match: D8LC80_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC80_ECTSI)

HSP 1 Score: 75.5 bits (184), Expect = 2.190e-14
Identity = 32/62 (51.61%), Postives = 40/62 (64.52%), Query Frame = 1 
Query:    1 PQQTILTDYLPGNPYSDLIQPVWCSYLIGARGVTVVSPDGKIFFQRGWFHSEHTALAIDKYW 186
            P + +L DYL GNPYS L QPVWC+Y  GAR   +VS  G +F+Q+ W  +E    AID YW
Sbjct:  166 PDEVVLPDYLTGNPYSSLNQPVWCTYANGARPSVMVSSSGSVFYQQEWLSTEGLGNAIDGYW 227
[Close]
BLAST of mRNA_M-pyrifera_M_contig10629.1356.1 vs. uniprot
Match: A0A6H5JSG9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSG9_9PHAE)

HSP 1 Score: 75.5 bits (184), Expect = 2.890e-14
Identity = 33/62 (53.23%), Postives = 40/62 (64.52%), Query Frame = 1 
Query:    1 PQQTILTDYLPGNPYSDLIQPVWCSYLIGARGVTVVSPDGKIFFQRGWFHSEHTALAIDKYW 186
            P + +L DYL GNPYS L QPVWC+Y  GAR   +VS  G IF+Q+ W  +E    AID YW
Sbjct:  191 PDEVVLPDYLTGNPYSSLNQPVWCTYANGARPSVMVSSSGSIFYQQEWMSTEGLENAIDGYW 252
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig10629.1356.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5KKN7_9PHAE7.390e-3180.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LCJ3_ECTSI2.530e-3078.46Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L0M4_9PHAE1.830e-1654.10Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FZ87_ECTSI1.400e-1549.15Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LC80_ECTSI2.190e-1451.61Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JSG9_9PHAE2.890e-1453.23Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig10629contigM-pyrifera_M_contig10629:165..443 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-03_002700.1
Exons1
Model size279
Cds size279
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815572.7731533-CDS-M-pyrifera_M_contig10629:164..4431622815572.7731533-CDS-M-pyrifera_M_contig10629:164..443Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10629 165..443 +
1692277469.6219957-CDS-M-pyrifera_M_contig10629:164..4431692277469.6219957-CDS-M-pyrifera_M_contig10629:164..443Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10629 165..443 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig10629.1356.1prot_M-pyrifera_M_contig10629.1356.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig10629 165..443 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig10629.1356.1

>prot_M-pyrifera_M_contig10629.1356.1 ID=prot_M-pyrifera_M_contig10629.1356.1|Name=mRNA_M-pyrifera_M_contig10629.1356.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=93bp
PQQTILTDYLPGNPYSDLIQPVWCSYLIGARGVTVVSPDGKIFFQRGWFH
SEHTALAIDKYWCEQLAESRAVEDWGERDDDGDGREDEGEGER
back to top

mRNA from alignment at M-pyrifera_M_contig10629:165..443+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig10629.1356.1 ID=mRNA_M-pyrifera_M_contig10629.1356.1|Name=mRNA_M-pyrifera_M_contig10629.1356.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=279bp|location=Sequence derived from alignment at M-pyrifera_M_contig10629:165..443+ (Macrocystis pyrifera P11B4 male)
CCTCAACAGACTATCCTCACGGACTACCTCCCGGGAAACCCTTACAGCGA
CCTGATCCAGCCCGTGTGGTGCTCGTACCTCATTGGAGCCCGCGGCGTCA
CGGTCGTGTCTCCCGACGGTAAAATATTCTTCCAGCGCGGATGGTTCCAC
TCAGAGCACACCGCCCTCGCTATCGACAAGTACTGGTGCGAGCAGTTGGC
GGAATCGAGGGCGGTAGAGGACTGGGGGGAGCGCGATGACGACGGGGACG
GGAGGGAGGATGAGGGAGAGGGGGAGCGA
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig10629:165..443+

>mRNA_M-pyrifera_M_contig10629.1356.1 ID=mRNA_M-pyrifera_M_contig10629.1356.1|Name=mRNA_M-pyrifera_M_contig10629.1356.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=558bp|location=Sequence derived from alignment at M-pyrifera_M_contig10629:165..443+ (Macrocystis pyrifera P11B4 male)
CCTCAACAGACTATCCTCACGGACTACCTCCCGGGAAACCCTTACAGCGA
CCTGATCCAGCCCGTGTGGTGCTCGTACCTCATTGGAGCCCGCGGCGTCA
CGGTCGTGTCTCCCGACGGTAAAATATTCTTCCAGCGCGGATGGTTCCAC
TCAGAGCACACCGCCCTCGCTATCGACAAGTACTGGTGCGAGCAGTTGGC
GGAATCGAGGGCGGTAGAGGACTGGGGGGAGCGCGATGACGACGGGGACG
GGAGGGAGGATGAGGGAGAGGGGGAGCGACCTCAACAGACTATCCTCACG
GACTACCTCCCGGGAAACCCTTACAGCGACCTGATCCAGCCCGTGTGGTG
CTCGTACCTCATTGGAGCCCGCGGCGTCACGGTCGTGTCTCCCGACGGTA
AAATATTCTTCCAGCGCGGATGGTTCCACTCAGAGCACACCGCCCTCGCT
ATCGACAAGTACTGGTGCGAGCAGTTGGCGGAATCGAGGGCGGTAGAGGA
CTGGGGGGAGCGCGATGACGACGGGGACGGGAGGGAGGATGAGGGAGAGG
GGGAGCGA
back to top