mRNA_M-pyrifera_M_contig106279.1353.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig106279.1353.1
Unique NamemRNA_M-pyrifera_M_contig106279.1353.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig106279.1353.1 vs. uniprot
Match: A0A061RUF7_9CHLO (Cob(I)alamin adenosyltransferase n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061RUF7_9CHLO)

HSP 1 Score: 189 bits (481), Expect = 1.020e-58
Identity = 98/155 (63.23%), Postives = 115/155 (74.19%), Query Frame = 1
Query:    1 RTGDKGTSSLYTGERRAKDDVLFMALGDTDELNSSLGIARAHCEAEENGMTERLAEIQSRLLDVGSAVATPVDSSSGAKASRVHFSASNVDDLEAWIDEMDGELPALRNFILPSGGLAASHLHVSRTVCRRAERRVAALVREGKVDEAVGRYLNR 465
            +TGD+G +SLY GERR K+DV+F ALGDTDELNS +G+AR +C    N +  +L  IQS LLD+GSA+ATP+DSS   K +RV F  S VD LE+WIDEMD +L  L  FILPSGG AASHLH +RTVCRRAER V  LV E K D  VGRYLNR
Sbjct:    9 KTGDQGEASLYNGERRTKNDVVFEALGDTDELNSIIGVAREYCLEAGNALPSQLETIQSSLLDIGSAIATPLDSSPDRKKNRVQFEESQVDKLESWIDEMDEQLDQLTTFILPSGGKAASHLHHARTVCRRAERSVVPLVAEQKTDAVVGRYLNR 163          
BLAST of mRNA_M-pyrifera_M_contig106279.1353.1 vs. uniprot
Match: A0A7S3UCX7_9CHLO (Hypothetical protein n=1 Tax=Picocystis salinarum TaxID=88271 RepID=A0A7S3UCX7_9CHLO)

HSP 1 Score: 187 bits (476), Expect = 5.330e-58
Identity = 99/155 (63.87%), Postives = 117/155 (75.48%), Query Frame = 1
Query:    1 RTGDKGTSSLYTGERRAKDDVLFMALGDTDELNSSLGIARAHCEAEENGMTERLAEIQSRLLDVGSAVATPVDSSSGAKASRVHFSASNVDDLEAWIDEMDGELPALRNFILPSGGLAASHLHVSRTVCRRAERRVAALVREGKVDEAVGRYLNR 465
            R GD+G SSLY GERR K  ++F ALGD DE+NS LG+AR HC   +NG+ E+LA+IQSRLLDVGSAVATP  +S+  K  R  F A NV  LE WIDE+  ELPAL  FILPSGGLAAS LH++R VCRRAER+V  LV   +V++AVGRYLNR
Sbjct:    6 RVGDRGESSLYNGERRKKHHMVFEALGDVDEINSVLGLAREHCLDVDNGIEEKLAQIQSRLLDVGSAVATPATTSAAHKLERTKFDARNVQLLEEWIDELTEELPALTQFILPSGGLAASTLHMARVVCRRAERKVWPLVDAEQVEDAVGRYLNR 160          
BLAST of mRNA_M-pyrifera_M_contig106279.1353.1 vs. uniprot
Match: A0A383W2B9_TETOB (Cob_adeno_trans domain-containing protein n=2 Tax=Scenedesmaceae TaxID=3086 RepID=A0A383W2B9_TETOB)

HSP 1 Score: 186 bits (473), Expect = 4.020e-57
Identity = 97/155 (62.58%), Postives = 121/155 (78.06%), Query Frame = 1
Query:    1 RTGDKGTSSLYTGERRAKDDVLFMALGDTDELNSSLGIARAHCEAEENGMTERLAEIQSRLLDVGSAVATPVDSSSGAKASRVHFSASNVDDLEAWIDEMDGELPALRNFILPSGGLAASHLHVSRTVCRRAERRVAALVREGKVDEAVGRYLNR 465
            +TGDKGT+SLY G+R  KDD +F ALGD DELNS++G+AR +C  EE  + ++L EIQSRLLDVGSAVATP DSSS +K +RV F +S   ++E W+D +D +LP LRNFILPSGG AA+HLH++R+VCRRAER V  LVR   VD  VG+YLNR
Sbjct:   13 KTGDKGTASLYNGQRLPKDDDMFHALGDVDELNSAVGVAREYC-TEEAELQQQLEEIQSRLLDVGSAVATPADSSSQSKLARVAFPSSATAEVEGWLDGLDDQLPPLRNFILPSGGKAAAHLHMARSVCRRAERSVVPLVRAELVDLEVGKYLNR 166          
BLAST of mRNA_M-pyrifera_M_contig106279.1353.1 vs. uniprot
Match: A0A1D2A203_AUXPR (Cob_adeno_trans domain-containing protein n=3 Tax=Auxenochlorella protothecoides TaxID=3075 RepID=A0A1D2A203_AUXPR)

HSP 1 Score: 185 bits (469), Expect = 1.620e-56
Identity = 100/155 (64.52%), Postives = 114/155 (73.55%), Query Frame = 1
Query:    1 RTGDKGTSSLYTGERRAKDDVLFMALGDTDELNSSLGIARAHCEAEENGMTERLAEIQSRLLDVGSAVATPVDSSSGAKASRVHFSASNVDDLEAWIDEMDGELPALRNFILPSGGLAASHLHVSRTVCRRAERRVAALVREGKVDEAVGRYLNR 465
            +TGDKGTSSLYTGERRAKDD  F ALGD DELNS++G+A  H    +  M  +LA IQSRLLDVGSAVATP+ S+S AK  R  F  ++   LEAWIDE   ELP L NFILPSGG AA+ LH++R+VCRRAER V  LV  G  DEAVG YLNR
Sbjct:   36 KTGDKGTSSLYTGERRAKDDATFAALGDVDELNSAIGVAGEHVRGLDPSMALQLATIQSRLLDVGSAVATPLASASEAKLRRAAFDPAHTPLLEAWIDEASAELPPLTNFILPSGGHAAAALHLARSVCRRAERAVVPLVGAGATDEAVGVYLNR 190          
BLAST of mRNA_M-pyrifera_M_contig106279.1353.1 vs. uniprot
Match: A0A5B8MIS6_9CHLO (Cobalamin adenosyltransferase n=1 Tax=Chloropicon primus TaxID=1764295 RepID=A0A5B8MIS6_9CHLO)

HSP 1 Score: 181 bits (460), Expect = 1.900e-55
Identity = 93/157 (59.24%), Postives = 117/157 (74.52%), Query Frame = 1
Query:    1 RTGDKGTSSLYTGERRAKDDVLFMALGDTDELNSSLGIARAHCEA--EENGMTERLAEIQSRLLDVGSAVATPVDSSSGAKASRVHFSASNVDDLEAWIDEMDGELPALRNFILPSGGLAASHLHVSRTVCRRAERRVAALVREGKVDEAVGRYLNR 465
            +TGD+GTSSLYTGERR K D +F ALGDTDELNS LGIAR +C      + + E+L  IQSRLLDVGSAVATP + ++  K+ RV F     +DLE WID  D E+P L+NFILPSGGLAAS LH++RT CRRAER++  L+R+  + + VG+Y+NR
Sbjct:   13 KTGDEGTSSLYTGERREKSDAVFEALGDTDELNSQLGIAREYCATLPGSSELCEQLEAIQSRLLDVGSAVATPPERATEKKSMRVVFPTGPTEDLEKWIDAYDAEIPPLKNFILPSGGLAASFLHLARTTCRRAERKIVPLIRKENIQKEVGQYMNR 169          
BLAST of mRNA_M-pyrifera_M_contig106279.1353.1 vs. uniprot
Match: B3SAN8_TRIAD (Cob_adeno_trans domain-containing protein n=2 Tax=Trichoplax TaxID=10227 RepID=B3SAN8_TRIAD)

HSP 1 Score: 177 bits (448), Expect = 1.010e-53
Identity = 90/155 (58.06%), Postives = 112/155 (72.26%), Query Frame = 1
Query:    1 RTGDKGTSSLYTGERRAKDDVLFMALGDTDELNSSLGIARAHCEAEENGMTERLAEIQSRLLDVGSAVATPVDSSSGAKASRVHFSASNVDDLEAWIDEMDGELPALRNFILPSGGLAASHLHVSRTVCRRAERRVAALVREGKVDEAVGRYLNR 465
            +TGDKG SSL+TGERR KDD +F ALG  DEL+S++G+AR  C        ++L +IQ RL D+GS +ATP   +   K  R  FS+SNV  LE WIDEMD +LP L+NFILPSGGL++S LHV+R++CRRAERRV  LVRE  VD  V +YLNR
Sbjct:    6 KTGDKGKSSLFTGERRLKDDTIFEALGTNDELSSAIGLAREFCLQAGQNFVDKLEQIQCRLQDIGSNIATPRIQADEDKLVRTEFSSSNVQQLELWIDEMDEQLPPLKNFILPSGGLSSSSLHVARSICRRAERRVVPLVRENAVDPDVAKYLNR 160          
BLAST of mRNA_M-pyrifera_M_contig106279.1353.1 vs. uniprot
Match: A0A507CE37_9FUNG (Cob(I)yrinic acid a,c-diamide adenosyltransferase n=1 Tax=Synchytrium microbalum TaxID=1806994 RepID=A0A507CE37_9FUNG)

HSP 1 Score: 176 bits (447), Expect = 1.580e-53
Identity = 93/155 (60.00%), Postives = 113/155 (72.90%), Query Frame = 1
Query:    1 RTGDKGTSSLYTGERRAKDDVLFMALGDTDELNSSLGIARAHCEAEENGMTERLAEIQSRLLDVGSAVATPVDSSSGAKASRVHFSASNVDDLEAWIDEMDGELPALRNFILPSGGLAASHLHVSRTVCRRAERRVAALVREGKVDEAVGRYLNR 465
            RTGDKGTS+LYTGERR KDD +F ALG TDELNS LG+AR  CE   NG+ E+L ++Q  L D+GS +ATP  + +  K       AS V +LE+WIDE+D  LP LRNFILPSGG AAS +HV+R+VCRRAERRV  LV  G  D++V +YLNR
Sbjct:   13 RTGDKGTSALYTGERRPKDDDIFEALGSTDELNSHLGLAREFCEEANNGLVEKLEKVQCLLQDIGSNIATPRSTENDLKKD-----ASLVTELESWIDELDDTLPPLRNFILPSGGRAASAIHVARSVCRRAERRVVPLVVVGAADDSVSKYLNR 162          
BLAST of mRNA_M-pyrifera_M_contig106279.1353.1 vs. uniprot
Match: A0A2V0P016_9CHLO (Cob_adeno_trans domain-containing protein n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0P016_9CHLO)

HSP 1 Score: 177 bits (448), Expect = 2.190e-53
Identity = 95/156 (60.90%), Postives = 115/156 (73.72%), Query Frame = 1
Query:    1 RTGDKGTSSLYTGERRAKDDVLFMALGDTDELNSSLGIARAHCEAEENG-MTERLAEIQSRLLDVGSAVATPVDSSSGAKASRVHFSASNVDDLEAWIDEMDGELPALRNFILPSGGLAASHLHVSRTVCRRAERRVAALVREGKVDEAVGRYLNR 465
            +TGD G+++LYTGERR K+D +F ALGD DELN +LG AR  C  E +G +  +LA +QSRLLDVGSAVATP  ++S  + +RV F A+    LEAWID MD +LP LRNFILPSGG AAS LH+SR VCRRAER VA L R G+V   VG +LNR
Sbjct:   13 KTGDAGSAALYTGERRPKEDAVFAALGDVDELNCALGAAREFCAPELHGALAAQLAHLQSRLLDVGSAVATPAGAASERQLARVQFDAAETVRLEAWIDSMDEQLPPLRNFILPSGGRAASLLHLSRAVCRRAERAVAPLARAGEVRPEVGAFLNR 168          
BLAST of mRNA_M-pyrifera_M_contig106279.1353.1 vs. uniprot
Match: A0A2P6UZS3_9CHLO (ATP:cob(I)alamin adenosyltransferase n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6UZS3_9CHLO)

HSP 1 Score: 176 bits (446), Expect = 2.380e-53
Identity = 93/155 (60.00%), Postives = 109/155 (70.32%), Query Frame = 1
Query:    1 RTGDKGTSSLYTGERRAKDDVLFMALGDTDELNSSLGIARAHCEAEENGMTERLAEIQSRLLDVGSAVATPVDSSSGAKASRVHFSASNVDDLEAWIDEMDGELPALRNFILPSGGLAASHLHVSRTVCRRAERRVAALVREGKVDEAVGRYLNR 465
            RTGD G SSLY+GERR KDD +F ALGD DE+NS +G+AR H    + G+  +L EIQSRL DVGSAVATP+ SSS  K  R  FS  +   LE WID M G+LP L  FILPSGGLA++ LH++R+VCRRAER V  L R G  D AV  YLNR
Sbjct:    6 RTGDGGASSLYSGERRPKDDAVFAALGDVDEVNSVIGLAREHARQVDPGLAGQLEEIQSRLFDVGSAVATPLPSSSEHKLQRTVFSTRHTQQLEQWIDGMTGQLPPLTQFILPSGGLASASLHMARSVCRRAERAVVPLTRGGTTDAAVAVYLNR 160          
BLAST of mRNA_M-pyrifera_M_contig106279.1353.1 vs. uniprot
Match: A0A7S3GR11_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GR11_9STRA)

HSP 1 Score: 178 bits (451), Expect = 5.530e-53
Identity = 88/155 (56.77%), Postives = 116/155 (74.84%), Query Frame = 1
Query:    1 RTGDKGTSSLYTGERRAKDDVLFMALGDTDELNSSLGIARAHCEAEENGMTERLAEIQSRLLDVGSAVATPVDSSSGAKASRVHFSASNVDDLEAWIDEMDGELPALRNFILPSGGLAASHLHVSRTVCRRAERRVAALVREGKVDEAVGRYLNR 465
            +TGDKG SSLY GERR+K+D++F  LG  DELN+++G+A  +C    NG+   L+EIQSRL D+G+AVATPV+SSS AK +   FS      LE WID++D +LP L NF++PSGGL+A+HL+++RT+CRRAER V  LV +  VD  VGRYLNR
Sbjct:   95 KTGDKGMSSLYNGERRSKNDMIFHTLGHQDELNAAIGVASEYCMLSNNGLQPMLSEIQSRLFDLGAAVATPVNSSSEAKVAYTKFSPKFTARLEEWIDDLDAKLPPLTNFVIPSGGLSATHLNLARTICRRAERSVVPLVEDDLVDGEVGRYLNR 249          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig106279.1353.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A061RUF7_9CHLO1.020e-5863.23Cob(I)alamin adenosyltransferase n=1 Tax=Tetraselm... [more]
A0A7S3UCX7_9CHLO5.330e-5863.87Hypothetical protein n=1 Tax=Picocystis salinarum ... [more]
A0A383W2B9_TETOB4.020e-5762.58Cob_adeno_trans domain-containing protein n=2 Tax=... [more]
A0A1D2A203_AUXPR1.620e-5664.52Cob_adeno_trans domain-containing protein n=3 Tax=... [more]
A0A5B8MIS6_9CHLO1.900e-5559.24Cobalamin adenosyltransferase n=1 Tax=Chloropicon ... [more]
B3SAN8_TRIAD1.010e-5358.06Cob_adeno_trans domain-containing protein n=2 Tax=... [more]
A0A507CE37_9FUNG1.580e-5360.00Cob(I)yrinic acid a,c-diamide adenosyltransferase ... [more]
A0A2V0P016_9CHLO2.190e-5360.90Cob_adeno_trans domain-containing protein n=1 Tax=... [more]
A0A2P6UZS3_9CHLO2.380e-5360.00ATP:cob(I)alamin adenosyltransferase n=1 Tax=Micra... [more]
A0A7S3GR11_9STRA5.530e-5356.77Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig106279contigM-pyrifera_M_contig106279:3..534 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score188.7
Seed ortholog evalue2e-45
Seed eggNOG ortholog3075.A0A087SUE7
KEGG rclassRC00533
KEGG koko:K00798
KEGG ReactionR01492,R05220,R07268
KEGG Pathwayko00860,ko01100,map00860,map01100
KEGG ModuleM00122
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Cobalamin adenosyltransferase
EggNOG OGs2QS64@2759,34I46@3041,37VSY@33090,COG2096@1
EC2.5.1.17
COG Functional cat.S
Best tax levelChlorophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons2
Model size468
Cds size468
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815572.6498241-CDS-M-pyrifera_M_contig106279:2..1311622815572.6498241-CDS-M-pyrifera_M_contig106279:2..131Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig106279 3..131 -
1692277469.5752149-CDS-M-pyrifera_M_contig106279:2..1311692277469.5752149-CDS-M-pyrifera_M_contig106279:2..131Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig106279 3..131 -
1622815572.6637871-CDS-M-pyrifera_M_contig106279:195..5341622815572.6637871-CDS-M-pyrifera_M_contig106279:195..534Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig106279 196..534 -
1692277469.5902133-CDS-M-pyrifera_M_contig106279:195..5341692277469.5902133-CDS-M-pyrifera_M_contig106279:195..534Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig106279 196..534 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig106279.1353.1prot_M-pyrifera_M_contig106279.1353.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig106279 3..534 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig106279.1353.1

>prot_M-pyrifera_M_contig106279.1353.1 ID=prot_M-pyrifera_M_contig106279.1353.1|Name=mRNA_M-pyrifera_M_contig106279.1353.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=156bp
RTGDKGTSSLYTGERRAKDDVLFMALGDTDELNSSLGIARAHCEAEENGM
TERLAEIQSRLLDVGSAVATPVDSSSGAKASRVHFSASNVDDLEAWIDEM
DGELPALRNFILPSGGLAASHLHVSRTVCRRAERRVAALVREGKVDEAVG
RYLNR*
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mRNA from alignment at M-pyrifera_M_contig106279:3..534-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig106279.1353.1 ID=mRNA_M-pyrifera_M_contig106279.1353.1|Name=mRNA_M-pyrifera_M_contig106279.1353.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=532bp|location=Sequence derived from alignment at M-pyrifera_M_contig106279:3..534- (Macrocystis pyrifera P11B4 male)
CGCACAGGAGACAAAGGAACGTCTTCCCTGTACACAGGCGAGAGGCGCGC GAAAGATGACGTGTTGTTCATGGCACTTGGCGACACGGACGAGCTGAACT CGTCGCTGGGCATTGCGAGGGCGCACTGCGAGGCTGAGGAGAACGGTATG ACGGAGCGGTTGGCGGAGATCCAGAGCAGGCTGCTTGATGTGGGATCAGC GGTGGCGACTCCTGTGGACTCCTCTTCTGGCGCCAAGGCGTCCCGTGTGC ACTTTAGCGCGTCCAACGTTGATGATTTGGAAGCGTGGATTGACGAGATG GACGGCGAGCTGCCCGCTCTGCGCAACTTCATCTTGCCGGTGCGTGTTTT GTTGTGCGCTTCTCATGCTTTGGTGGCCTCACGCGCTTGCTTTCCTTCTG CAGTCTGGCGGGCTGGCGGCCTCCCATTTGCACGTGAGTCGCACCGTCTG TCGCAGGGCTGAGCGGCGCGTGGCTGCGTTGGTGCGGGAGGGGAAGGTGG ACGAAGCTGTGGGCAGGTACCTGAACAGGTAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig106279:3..534-

>mRNA_M-pyrifera_M_contig106279.1353.1 ID=mRNA_M-pyrifera_M_contig106279.1353.1|Name=mRNA_M-pyrifera_M_contig106279.1353.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=936bp|location=Sequence derived from alignment at M-pyrifera_M_contig106279:3..534- (Macrocystis pyrifera P11B4 male)
CGCACAGGAGACAAAGGAACGTCTTCCCTGTACACAGGCGAGAGGCGCGC
GAAAGATGACGTGTTGTTCATGGCACTTGGCGACACGGACGAGCTGAACT
CGTCGCTGGGCATTGCGAGGGCGCACTGCGAGGCTGAGGAGAACGGTATG
ACGGAGCGGTTGGCGGAGATCCAGAGCAGGCTGCTTGATGTGGGATCAGC
GGTGGCGACTCCTGTGGACTCCTCTTCTGGCGCCAAGGCGTCCCGTGTGC
ACTTTAGCGCGTCCAACGTTGATGATTTGGAAGCGTGGATTGACGAGATG
GACGGCGAGCTGCCCGCTCTGCGCAACTTCATCTTGCCGCGCACAGGAGA
CAAAGGAACGTCTTCCCTGTACACAGGCGAGAGGCGCGCGAAAGATGACG
TGTTGTTCATGGCACTTGGCGACACGGACGAGCTGAACTCGTCGCTGGGC
ATTGCGAGGGCGCACTGCGAGGCTGAGGAGAACGGTATGACGGAGCGGTT
GGCGGAGATCCAGAGCAGGCTGCTTGATGTGGGATCAGCGGTGGCGACTC
CTGTGGACTCCTCTTCTGGCGCCAAGGCGTCCCGTGTGCACTTTAGCGCG
TCCAACGTTGATGATTTGGAAGCGTGGATTGACGAGATGGACGGCGAGCT
GCCCGCTCTGCGCAACTTCATCTTGCCGTCTGGCGGGCTGGCGGCCTCCC
ATTTGCACGTGAGTCGCACCGTCTGTCGCAGGGCTGAGCGGCGCGTGGCT
GCGTTGGTGCGGGAGGGGAAGGTGGACGAAGCTGTGGGCAGGTACCTGAA
CAGGTAGTCTGGCGGGCTGGCGGCCTCCCATTTGCACGTGAGTCGCACCG
TCTGTCGCAGGGCTGAGCGGCGCGTGGCTGCGTTGGTGCGGGAGGGGAAG
GTGGACGAAGCTGTGGGCAGGTACCTGAACAGGTAG
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