mRNA_M-pyrifera_M_contig106269.1350.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig106269.1350.1
Unique NamemRNA_M-pyrifera_M_contig106269.1350.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig106269.1350.1 vs. uniprot
Match: A0A7S4I6S5_9EUKA (Hypothetical protein n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4I6S5_9EUKA)

HSP 1 Score: 89.4 bits (220), Expect = 4.770e-17
Identity = 57/209 (27.27%), Postives = 102/209 (48.80%), Query Frame = 1 
Query:    1 VSTHDTAIVGVWSDRLLLAHHETSKLTVQTMAIGLLEPLLLGELAACDLFGRSPQLNREHIGKLLARYDCKRISGALLSELELGGYYDIALALSRDSPLVGLKRKFYQALYARQFQTAKEFLDSLRLAEAPSESLSTSXXXXXXXXXXXXXXLAKLYCALAAAAGKYGQFALAVACFGVAENFVAMLPLLAACGNRGAIETVLKQLQSK 627
            + + +   V +W+DR++      ++L V    +GLLEPLLLGELAA  + GR  Q++++ +  ++  YD KR    L+ +L+  GYYD+AL LS    +   + KF  AL +R+  TA E L+     +  +  L                        LA    +YGQ+ L+  C+ + +++  +L  +    +   +  + K++Q+K
Sbjct:  647 LGSSEATFVSIWNDRIMTCAWNATELKVMANGVGLLEPLLLGELAATGICGRPKQISKDLLQHIIRTYDYKRTDLKLIKQLQHHGYYDVALQLSIPHSVCTYRVKFDAALKSRKLYTAMEMLEEQCRVQKAAPPLHGEARRMAEE--------------LAKVCTQYGQYFLSYRCYELLQDYYTLLQNVVIHRDMHGLTFLKKRVQAK 841
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BLAST of mRNA_M-pyrifera_M_contig106269.1350.1 vs. uniprot
Match: L8HFA8_ACACA (WD domain, G-beta repeat-containing protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8HFA8_ACACA)

HSP 1 Score: 70.5 bits (171), Expect = 1.420e-10
Identity = 54/191 (28.27%), Postives = 89/191 (46.60%), Query Frame = 1 
Query:   22 IVGVWSDRLLLAHHETSKLTVQTMAIGLLEPLLLGELAACDLFGRSPQLNREHIGKLLARYDCKRISGALLSELELGGYYDIALALSRDSPLVGLKRKFYQALYARQFQTA-----KEFLDSLRLAEAPSESLSTSXXXXXXXXXXXXXXLAKLYCALAAAAGKYGQFALAVACFGVAENFVAMLPLLAAC 579
            I  V +DR+  A     +  +++  +GLLEPLL+G+L+       SP   R  I +++ R+DC+R+S  LL EL+  G  D+A AL+ +S L+    K+  A+ +  F  A     K + +S      P  S                  L   +  LA  A  + Q+ +A  C+ V  ++ A+L + A C
Sbjct:  712 ITAVMNDRIFYACPYHDRTQIRSQPVGLLEPLLMGQLSMAPFLRLSPHHLRPLIARIVGRFDCRRVSQFLLEELDRRGLPDLAFALAENSILLDDIYKYELAVRSLSFHKAINLLYKAYKNSPEYPALPESS-----------------ELRGRFVHLAEVAVDFQQYEIARRCYEVLNDYYALLHIYAIC 885
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig106269.1350.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A7S4I6S5_9EUKA4.770e-1727.27Hypothetical protein n=1 Tax=Vannella sp. CB-2014 ... [more]
L8HFA8_ACACA1.420e-1028.27WD domain, G-beta repeat-containing protein n=1 Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig106269contigM-pyrifera_M_contig106269:1..627 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size627
Cds size627
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815572.4619718-CDS-M-pyrifera_M_contig106269:0..6271622815572.4619718-CDS-M-pyrifera_M_contig106269:0..627Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig106269 1..627 +
1692277469.505416-CDS-M-pyrifera_M_contig106269:0..6271692277469.505416-CDS-M-pyrifera_M_contig106269:0..627Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig106269 1..627 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig106269.1350.1prot_M-pyrifera_M_contig106269.1350.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig106269 1..627 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig106269.1350.1

>prot_M-pyrifera_M_contig106269.1350.1 ID=prot_M-pyrifera_M_contig106269.1350.1|Name=mRNA_M-pyrifera_M_contig106269.1350.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=209bp
VSTHDTAIVGVWSDRLLLAHHETSKLTVQTMAIGLLEPLLLGELAACDLF
GRSPQLNREHIGKLLARYDCKRISGALLSELELGGYYDIALALSRDSPLV
GLKRKFYQALYARQFQTAKEFLDSLRLAEAPSESLSTSMEMLQARAPAPS
PSLAKLYCALAAAAGKYGQFALAVACFGVAENFVAMLPLLAACGNRGAIE
TVLKQLQSK
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mRNA from alignment at M-pyrifera_M_contig106269:1..627+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig106269.1350.1 ID=mRNA_M-pyrifera_M_contig106269.1350.1|Name=mRNA_M-pyrifera_M_contig106269.1350.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=627bp|location=Sequence derived from alignment at M-pyrifera_M_contig106269:1..627+ (Macrocystis pyrifera P11B4 male)
GTATCCACGCATGACACTGCAATCGTTGGTGTTTGGAGCGACCGCCTCCT
CCTTGCCCATCACGAGACTTCCAAGCTGACTGTTCAGACGATGGCGATTG
GTTTGTTGGAACCTCTTCTTCTCGGAGAGCTGGCTGCGTGTGACTTGTTT
GGTCGGTCGCCTCAGCTGAACCGAGAGCACATTGGGAAGCTCCTCGCTCG
CTATGACTGCAAGAGGATCAGTGGGGCGCTGCTCTCTGAACTGGAGTTGG
GAGGCTACTACGACATTGCGCTGGCCCTGTCTCGCGACTCGCCTTTGGTT
GGCTTGAAGAGGAAATTCTACCAAGCACTGTATGCTCGCCAATTTCAGAC
GGCGAAGGAGTTTCTTGATTCTCTGAGACTGGCCGAGGCTCCCTCTGAGT
CACTGTCAACCAGCATGGAAATGCTGCAAGCTCGAGCGCCTGCTCCCTCG
CCTTCTCTGGCCAAGCTCTACTGTGCCCTTGCAGCAGCTGCAGGAAAGTA
TGGCCAGTTTGCGTTGGCGGTGGCGTGCTTTGGAGTAGCAGAGAACTTCG
TCGCCATGCTGCCCCTCTTGGCTGCCTGCGGCAACCGAGGAGCCATCGAG
ACCGTTCTCAAACAGCTGCAGAGCAAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig106269:1..627+

>mRNA_M-pyrifera_M_contig106269.1350.1 ID=mRNA_M-pyrifera_M_contig106269.1350.1|Name=mRNA_M-pyrifera_M_contig106269.1350.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1254bp|location=Sequence derived from alignment at M-pyrifera_M_contig106269:1..627+ (Macrocystis pyrifera P11B4 male)
GTATCCACGCATGACACTGCAATCGTTGGTGTTTGGAGCGACCGCCTCCT
CCTTGCCCATCACGAGACTTCCAAGCTGACTGTTCAGACGATGGCGATTG
GTTTGTTGGAACCTCTTCTTCTCGGAGAGCTGGCTGCGTGTGACTTGTTT
GGTCGGTCGCCTCAGCTGAACCGAGAGCACATTGGGAAGCTCCTCGCTCG
CTATGACTGCAAGAGGATCAGTGGGGCGCTGCTCTCTGAACTGGAGTTGG
GAGGCTACTACGACATTGCGCTGGCCCTGTCTCGCGACTCGCCTTTGGTT
GGCTTGAAGAGGAAATTCTACCAAGCACTGTATGCTCGCCAATTTCAGAC
GGCGAAGGAGTTTCTTGATTCTCTGAGACTGGCCGAGGCTCCCTCTGAGT
CACTGTCAACCAGCATGGAAATGCTGCAAGCTCGAGCGCCTGCTCCCTCG
CCTTCTCTGGCCAAGCTCTACTGTGCCCTTGCAGCAGCTGCAGGAAAGTA
TGGCCAGTTTGCGTTGGCGGTGGCGTGCTTTGGAGTAGCAGAGAACTTCG
TCGCCATGCTGCCCCTCTTGGCTGCCTGCGGCAACCGAGGAGCCATCGAG
ACCGTTCTCAAACAGCTGCAGAGCAAGGTATCCACGCATGACACTGCAAT
CGTTGGTGTTTGGAGCGACCGCCTCCTCCTTGCCCATCACGAGACTTCCA
AGCTGACTGTTCAGACGATGGCGATTGGTTTGTTGGAACCTCTTCTTCTC
GGAGAGCTGGCTGCGTGTGACTTGTTTGGTCGGTCGCCTCAGCTGAACCG
AGAGCACATTGGGAAGCTCCTCGCTCGCTATGACTGCAAGAGGATCAGTG
GGGCGCTGCTCTCTGAACTGGAGTTGGGAGGCTACTACGACATTGCGCTG
GCCCTGTCTCGCGACTCGCCTTTGGTTGGCTTGAAGAGGAAATTCTACCA
AGCACTGTATGCTCGCCAATTTCAGACGGCGAAGGAGTTTCTTGATTCTC
TGAGACTGGCCGAGGCTCCCTCTGAGTCACTGTCAACCAGCATGGAAATG
CTGCAAGCTCGAGCGCCTGCTCCCTCGCCTTCTCTGGCCAAGCTCTACTG
TGCCCTTGCAGCAGCTGCAGGAAAGTATGGCCAGTTTGCGTTGGCGGTGG
CGTGCTTTGGAGTAGCAGAGAACTTCGTCGCCATGCTGCCCCTCTTGGCT
GCCTGCGGCAACCGAGGAGCCATCGAGACCGTTCTCAAACAGCTGCAGAG
CAAG
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