mRNA_M-pyrifera_M_contig10626.1348.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig10626.1348.1
Unique NamemRNA_M-pyrifera_M_contig10626.1348.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig10626.1348.1 vs. uniprot
Match: D8LJN4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJN4_ECTSI)

HSP 1 Score: 99.0 bits (245), Expect = 7.170e-26
Identity = 48/48 (100.00%), Postives = 48/48 (100.00%), Query Frame = 1 
Query:    7 YQTPESKKEEFRKYLEKSGVIDALTKVLVGLYEEPERPPNAVDYIKRY 150
            YQTPESKKEEFRKYLEKSGVIDALTKVLVGLYEEPERPPNAVDYIKRY
Sbjct:    4 YQTPESKKEEFRKYLEKSGVIDALTKVLVGLYEEPERPPNAVDYIKRY 51
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BLAST of mRNA_M-pyrifera_M_contig10626.1348.1 vs. uniprot
Match: F0XYG0_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XYG0_AURAN)

HSP 1 Score: 97.8 bits (242), Expect = 2.110e-25
Identity = 47/48 (97.92%), Postives = 48/48 (100.00%), Query Frame = 1 
Query:    7 YQTPESKKEEFRKYLEKSGVIDALTKVLVGLYEEPERPPNAVDYIKRY 150
            YQTP+SKKEEFRKYLEKSGVIDALTKVLVGLYEEPERPPNAVDYIKRY
Sbjct:    3 YQTPDSKKEEFRKYLEKSGVIDALTKVLVGLYEEPERPPNAVDYIKRY 50
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BLAST of mRNA_M-pyrifera_M_contig10626.1348.1 vs. uniprot
Match: A0A8J2SGQ9_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SGQ9_9STRA)

HSP 1 Score: 97.8 bits (242), Expect = 2.110e-25
Identity = 47/48 (97.92%), Postives = 48/48 (100.00%), Query Frame = 1 
Query:    7 YQTPESKKEEFRKYLEKSGVIDALTKVLVGLYEEPERPPNAVDYIKRY 150
            YQTP+SKKEEFRKYLEKSGVIDALTKVLVGLYEEPERPPNAVDYIKRY
Sbjct:    3 YQTPDSKKEEFRKYLEKSGVIDALTKVLVGLYEEPERPPNAVDYIKRY 50
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BLAST of mRNA_M-pyrifera_M_contig10626.1348.1 vs. uniprot
Match: A0A7S2C7M0_9STRA (Hypothetical protein n=2 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2C7M0_9STRA)

HSP 1 Score: 97.8 bits (242), Expect = 3.820e-25
Identity = 47/48 (97.92%), Postives = 48/48 (100.00%), Query Frame = 1 
Query:    7 YQTPESKKEEFRKYLEKSGVIDALTKVLVGLYEEPERPPNAVDYIKRY 150
            YQTP+SKKEEFRKYLEKSGVIDALTKVLVGLYEEPERPPNAVDYIKRY
Sbjct:   24 YQTPDSKKEEFRKYLEKSGVIDALTKVLVGLYEEPERPPNAVDYIKRY 71
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BLAST of mRNA_M-pyrifera_M_contig10626.1348.1 vs. uniprot
Match: A0A836C913_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C913_9STRA)

HSP 1 Score: 96.3 bits (238), Expect = 8.370e-25
Identity = 47/49 (95.92%), Postives = 48/49 (97.96%), Query Frame = 1 
Query:    4 TYQTPESKKEEFRKYLEKSGVIDALTKVLVGLYEEPERPPNAVDYIKRY 150
            +YQTPESKKEEFRKYLEKSGVIDALTKVLVGLYEEPERP NAVDYIKRY
Sbjct:    3 SYQTPESKKEEFRKYLEKSGVIDALTKVLVGLYEEPERPSNAVDYIKRY 51
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BLAST of mRNA_M-pyrifera_M_contig10626.1348.1 vs. uniprot
Match: A0A5A8C7L2_CAFRO (Uncharacterized protein n=2 Tax=Sar TaxID=2698737 RepID=A0A5A8C7L2_CAFRO)

HSP 1 Score: 94.0 bits (232), Expect = 8.590e-24
Identity = 43/49 (87.76%), Postives = 49/49 (100.00%), Query Frame = 1 
Query:    4 TYQTPESKKEEFRKYLEKSGVIDALTKVLVGLYEEPERPPNAVDYIKRY 150
            TYQTP++KKEEFRKYLEK+GVID++TKVLVGLYEEPERPPNAV+YIKRY
Sbjct:    4 TYQTPDAKKEEFRKYLEKAGVIDSMTKVLVGLYEEPERPPNAVEYIKRY 52
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BLAST of mRNA_M-pyrifera_M_contig10626.1348.1 vs. uniprot
Match: G4ZAR7_PHYSP (Uncharacterized protein n=2 Tax=Oomycota TaxID=4762 RepID=G4ZAR7_PHYSP)

HSP 1 Score: 92.0 bits (227), Expect = 3.650e-23
Identity = 42/49 (85.71%), Postives = 48/49 (97.96%), Query Frame = 1 
Query:    4 TYQTPESKKEEFRKYLEKSGVIDALTKVLVGLYEEPERPPNAVDYIKRY 150
            TYQTP+SKKEEFRKYLEKSGV+DALTKVLVGLYEE ++PPNAVDY+KR+
Sbjct:    5 TYQTPDSKKEEFRKYLEKSGVVDALTKVLVGLYEEADKPPNAVDYVKRF 53
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BLAST of mRNA_M-pyrifera_M_contig10626.1348.1 vs. uniprot
Match: A0A485LCE8_9STRA (Aste57867_19307 protein n=9 Tax=Saprolegniaceae TaxID=4764 RepID=A0A485LCE8_9STRA)

HSP 1 Score: 89.7 bits (221), Expect = 3.840e-22
Identity = 42/48 (87.50%), Postives = 47/48 (97.92%), Query Frame = 1 
Query:    7 YQTPESKKEEFRKYLEKSGVIDALTKVLVGLYEEPERPPNAVDYIKRY 150
            YQTP+SKKEEFRKYLEKSGVID+LTKVLVGLYEE ++PPNAVDYIKR+
Sbjct:    7 YQTPDSKKEEFRKYLEKSGVIDSLTKVLVGLYEESDKPPNAVDYIKRF 54
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BLAST of mRNA_M-pyrifera_M_contig10626.1348.1 vs. uniprot
Match: A0A0W8DQZ1_PHYNI (c-Myc-binding protein n=1 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8DQZ1_PHYNI)

HSP 1 Score: 90.1 bits (222), Expect = 4.940e-22
Identity = 41/48 (85.42%), Postives = 47/48 (97.92%), Query Frame = 1 
Query:    7 YQTPESKKEEFRKYLEKSGVIDALTKVLVGLYEEPERPPNAVDYIKRY 150
            YQTP+SKKEEFRKYLEKSGV+DALTKVLVGLYEE ++PPNAVDY+KR+
Sbjct:    6 YQTPDSKKEEFRKYLEKSGVVDALTKVLVGLYEEADKPPNAVDYVKRF 53
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BLAST of mRNA_M-pyrifera_M_contig10626.1348.1 vs. uniprot
Match: K3WP52_GLOUD (Uncharacterized protein n=7 Tax=Oomycota TaxID=4762 RepID=K3WP52_GLOUD)

HSP 1 Score: 89.0 bits (219), Expect = 7.750e-22
Identity = 42/49 (85.71%), Postives = 47/49 (95.92%), Query Frame = 1 
Query:    4 TYQTPESKKEEFRKYLEKSGVIDALTKVLVGLYEEPERPPNAVDYIKRY 150
            TYQTP+SKKEEFRKYLEKSGV+DALTKVLVGLYEE ++P NAVDYIKR+
Sbjct:    6 TYQTPDSKKEEFRKYLEKSGVVDALTKVLVGLYEEGDKPSNAVDYIKRF 54
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig10626.1348.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LJN4_ECTSI7.170e-26100.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
F0XYG0_AURAN2.110e-2597.92Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A8J2SGQ9_9STRA2.110e-2597.92Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S2C7M0_9STRA3.820e-2597.92Hypothetical protein n=2 Tax=Florenciella parvula ... [more]
A0A836C913_9STRA8.370e-2595.92Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A5A8C7L2_CAFRO8.590e-2487.76Uncharacterized protein n=2 Tax=Sar TaxID=2698737 ... [more]
G4ZAR7_PHYSP3.650e-2385.71Uncharacterized protein n=2 Tax=Oomycota TaxID=476... [more]
A0A485LCE8_9STRA3.840e-2287.50Aste57867_19307 protein n=9 Tax=Saprolegniaceae Ta... [more]
A0A0W8DQZ1_PHYNI4.940e-2285.42c-Myc-binding protein n=1 Tax=Phytophthora nicotia... [more]
K3WP52_GLOUD7.750e-2285.71Uncharacterized protein n=7 Tax=Oomycota TaxID=476... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig10626contigM-pyrifera_M_contig10626:3708..3866 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score99.8
Seed ortholog evalue4.2e-19
Seed eggNOG ortholog2880.D8LJN4
Preferred namemycbp
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044464
EggNOG OGs2CYZS@1,2S7GH@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size159
Cds size159
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815572.3876507-CDS-M-pyrifera_M_contig10626:3707..38661622815572.3876507-CDS-M-pyrifera_M_contig10626:3707..3866Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10626 3708..3866 +
1692277469.4760857-CDS-M-pyrifera_M_contig10626:3707..38661692277469.4760857-CDS-M-pyrifera_M_contig10626:3707..3866Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10626 3708..3866 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig10626.1348.1prot_M-pyrifera_M_contig10626.1348.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig10626 3708..3866 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig10626.1348.1

>prot_M-pyrifera_M_contig10626.1348.1 ID=prot_M-pyrifera_M_contig10626.1348.1|Name=mRNA_M-pyrifera_M_contig10626.1348.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=53bp
QTYQTPESKKEEFRKYLEKSGVIDALTKVLVGLYEEPERPPNAVDYIKRY
ET*
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mRNA from alignment at M-pyrifera_M_contig10626:3708..3866+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig10626.1348.1 ID=mRNA_M-pyrifera_M_contig10626.1348.1|Name=mRNA_M-pyrifera_M_contig10626.1348.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=159bp|location=Sequence derived from alignment at M-pyrifera_M_contig10626:3708..3866+ (Macrocystis pyrifera P11B4 male)
CAAACGTATCAGACCCCGGAGTCTAAGAAGGAGGAGTTCCGCAAGTACCT
CGAGAAGAGCGGCGTGATCGACGCGCTGACCAAGGTCCTCGTGGGCCTGT
ACGAGGAACCGGAGCGCCCTCCAAACGCTGTGGACTACATCAAGAGGTAT
GAGACATGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig10626:3708..3866+

>mRNA_M-pyrifera_M_contig10626.1348.1 ID=mRNA_M-pyrifera_M_contig10626.1348.1|Name=mRNA_M-pyrifera_M_contig10626.1348.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=318bp|location=Sequence derived from alignment at M-pyrifera_M_contig10626:3708..3866+ (Macrocystis pyrifera P11B4 male)
CAAACGTATCAGACCCCGGAGTCTAAGAAGGAGGAGTTCCGCAAGTACCT
CGAGAAGAGCGGCGTGATCGACGCGCTGACCAAGGTCCTCGTGGGCCTGT
ACGAGGAACCGGAGCGCCCTCCAAACGCTGTGGACTACATCAAGAGGTAT
GAGACATGACAAACGTATCAGACCCCGGAGTCTAAGAAGGAGGAGTTCCG
CAAGTACCTCGAGAAGAGCGGCGTGATCGACGCGCTGACCAAGGTCCTCG
TGGGCCTGTACGAGGAACCGGAGCGCCCTCCAAACGCTGTGGACTACATC
AAGAGGTATGAGACATGA
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