mRNA_M-pyrifera_M_contig10622.1346.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig10622.1346.1
Unique NamemRNA_M-pyrifera_M_contig10622.1346.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig10622.1346.1 vs. uniprot
Match: D8LER1_ECTSI (3-phosphoshikimate 1-carboxyvinyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LER1_ECTSI)

HSP 1 Score: 385 bits (989), Expect = 3.550e-130
Identity = 198/218 (90.83%), Postives = 209/218 (95.87%), Query Frame = 1 
Query:    1 ATPSMRLESLTVEPISLISGEMELPGSKSLSNRVLLLSALAEGTTNVENLLDSEDIQYMLGALETLKVTVKSDLDAKTVEVVGNAGPFEVSDPTLLFLGNAGTAMRPLTAVMCAGKGEFVMDGTPRMRERPIVDLVDGLKQLGVDVTCSDTGCPPVTIKASGIKGGTTRVSGKISSQYLSALLMAAPLSEGEIVIEITDELVSAPYVHMTIKLMEKFG 654
            AT + RLESLTV PISLISGE+ELPGSKSLSNRVLLLSALAEGTT VENLLDSEDIQYMLGAL+TLKV+V SDL+AKTVEVVGNAGPFEVSDPT LFLGNAGTAMRPLTAV+CAGKGEFVMDGTPRMRERPIVDLVDGLKQLGVDV+CSDTGCPPV IKA+G+ GGTTRVSGKISSQYLSALLMAAPLS GE+VIEITDELVSAPYVHMTIKLM+KFG
Sbjct:   78 ATAATRLESLTVSPISLISGEVELPGSKSLSNRVLLLSALAEGTTKVENLLDSEDIQYMLGALKTLKVSVDSDLEAKTVEVVGNAGPFEVSDPTELFLGNAGTAMRPLTAVVCAGKGEFVMDGTPRMRERPIVDLVDGLKQLGVDVSCSDTGCPPVNIKAAGLNGGTTRVSGKISSQYLSALLMAAPLSSGEVVIEITDELVSAPYVHMTIKLMDKFG 295
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BLAST of mRNA_M-pyrifera_M_contig10622.1346.1 vs. uniprot
Match: A0A836CIT3_9STRA (3-phosphoshikimate 1-carboxyvinyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIT3_9STRA)

HSP 1 Score: 313 bits (803), Expect = 5.620e-103
Identity = 164/215 (76.28%), Postives = 181/215 (84.19%), Query Frame = 1 
Query:   16 RLESLTVEPISLISGEMELPGSKSLSNRVLLLSALAEGTTNVENLLDSEDIQYMLGALETLKVTVKSDLDAKTVEVVGNAGPFEVSD--PTLLFLGNAGTAMRPLTAVMCAGKGEFVMDGTPRMRERPIVDLVDGLKQLGVDVTCSDTGCPPVTIKASGIKGGTTRVSGKISSQYLSALLMAAPLSEGEIVIEITDELVSAPYVHMTIKLMEKFG 654
            +LE+LTVEPI  ISGE+ LPGSKSLSNRVLLL+AL+ GTT + NLLDS+DI+YMLGALE L V +  D++AK V V GNAG F   D  P  LFLGNAGTAMRPLTAVMCAG+G FVMDGTPRMRERPI DLV GL QLGVDVTCSDTGCPPV I A+GI GGT RVSGKISSQYLSALLMAAPL+ G++ IEITDELVSAPYV MT+KLM KFG
Sbjct:    6 KLETLTVEPIDKISGEVVLPGSKSLSNRVLLLAALSSGTTTINNLLDSDDIRYMLGALEKLGVGLDRDVEAKRVVVTGNAGAFNAPDATPIELFLGNAGTAMRPLTAVMCAGEGNFVMDGTPRMRERPIKDLVGGLVQLGVDVTCSDTGCPPVRIAAAGIPGGTARVSGKISSQYLSALLMAAPLARGDVTIEITDELVSAPYVSMTVKLMAKFG 220
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BLAST of mRNA_M-pyrifera_M_contig10622.1346.1 vs. uniprot
Match: A0A6V1NGJ7_HETAK (3-phosphoshikimate 1-carboxyvinyltransferase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1NGJ7_HETAK)

HSP 1 Score: 309 bits (792), Expect = 2.160e-101
Identity = 155/214 (72.43%), Postives = 184/214 (85.98%), Query Frame = 1 
Query:   19 LESLTVEPISLISGEMELPGSKSLSNRVLLLSALAEGTTNVENLLDSEDIQYMLGALETLKVTVKSD--LDAKTVEVVGNAGPFEVSDPTLLFLGNAGTAMRPLTAVMCAGKGEFVMDGTPRMRERPIVDLVDGLKQLGVDVTCSDTGCPPVTIKASGIKGGTTRVSGKISSQYLSALLMAAPLSEGEIVIEITDELVSAPYVHMTIKLMEKFG 654
            LE L +EPI+ I+GE++LPGSKSLSNRVLLLSALAEG+T +ENLL S+DI+YM+ AL+TLK+ +     L  K V+V GN GPF   +PT LFLGNAGTAMRPLTAVMCAG+G+FV+DG PRMRERPI DL DGL QLGVD++ SDTGCPPV IKA G++GGTTRVSGKISSQY+SALLM APL++G++VIEI DELVSAPYVHMTIKLM+K+G
Sbjct:    6 LEQLRLEPIAKITGEVDLPGSKSLSNRVLLLSALAEGSTTIENLLSSDDIKYMIEALQTLKIPLDLSEYLSEKRVKVEGNGGPFNADEPTELFLGNAGTAMRPLTAVMCAGRGDFVLDGVPRMRERPIKDLSDGLLQLGVDISVSDTGCPPVNIKARGVRGGTTRVSGKISSQYISALLMMAPLAQGDVVIEIADELVSAPYVHMTIKLMKKYG 219
[Close]
BLAST of mRNA_M-pyrifera_M_contig10622.1346.1 vs. uniprot
Match: A0A7S2XVK4_9STRA (3-phosphoshikimate 1-carboxyvinyltransferase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XVK4_9STRA)

HSP 1 Score: 293 bits (751), Expect = 1.390e-94
Identity = 153/214 (71.50%), Postives = 175/214 (81.78%), Query Frame = 1 
Query:   19 LESLTVEPISLISGEMELPGSKSLSNRVLLLSALAEGTTNVENLLDSEDIQYMLGALETLKVTVKSDLDAKTVEVVGNAGPFEVS--DPTLLFLGNAGTAMRPLTAVMCAGKGEFVMDGTPRMRERPIVDLVDGLKQLGVDVTCSDTGCPPVTIKASGIKGGTTRVSGKISSQYLSALLMAAPLSEGEIVIEITDELVSAPYVHMTIKLMEKFG 654
            ++S+T++PIS ISGE+ELPGSKSLSNRVLLLSALA G T VENLL SEDI YML AL+TL + +    + K V V GN GPF     D T LFLGNAGTAMRPL AV+CAG+G FV+DG  RMRERPI DL DGLKQLGVDV+CS TGCPPV + A GI+GG TRVSGKISSQ+LSALLM APL++ ++VIEITDELVSAPYVHMTIKLM K+G
Sbjct:   57 VDSITLQPISKISGEVELPGSKSLSNRVLLLSALATGETTVENLLSSEDIHYMLDALKTLNIGLDQYPEEKRVIVTGNGGPFNADPEDGTELFLGNAGTAMRPLAAVVCAGQGNFVLDGVARMRERPIKDLTDGLKQLGVDVSCSGTGCPPVFVHAKGIEGGLTRVSGKISSQFLSALLMMAPLAKSDVVIEITDELVSAPYVHMTIKLMAKYG 270
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BLAST of mRNA_M-pyrifera_M_contig10622.1346.1 vs. uniprot
Match: A0A7S1UKH8_9STRA (3-phosphoshikimate 1-carboxyvinyltransferase n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UKH8_9STRA)

HSP 1 Score: 285 bits (728), Expect = 2.570e-91
Identity = 151/216 (69.91%), Postives = 175/216 (81.02%), Query Frame = 1 
Query:   19 LESLTVEPISLISGEMELPGSKSLSNRVLLLSALAEGTTNVENLLDSEDIQYMLGALETLKVTVKSDLDAKTVEVVGNAGPFEVSDP----TLLFLGNAGTAMRPLTAVMCAGKGEFVMDGTPRMRERPIVDLVDGLKQLGVDVTCSDTGCPPVTIKASGIKGGTTRVSGKISSQYLSALLMAAPLSEGEIVIEITDELVSAPYVHMTIKLMEKFG 654
            LESL VEPI+ I+G + LPGSKSLSNRVLLL+AL+EGTT VENLLDS+DI+YMLGAL+ L V  + D +A+ V V G  G F+VSD     T L+LGNAGTAMRPL AV+ A +G +V+DGTPRMRERPI DLV  LK L V++ CSDTGCPPVTI A G+ GGT  VSGKISSQYLSALLMAAPL+ G+I I+I DELVSAPYVHMTIKL+EKFG
Sbjct:   38 LESLDVEPIAKITGTVTLPGSKSLSNRVLLLAALSEGTTVVENLLDSDDIRYMLGALKDLGVEYEEDTEARRVTVKGLGGGFKVSDDAAAATELYLGNAGTAMRPLCAVVAASEGRYVLDGTPRMRERPIQDLVTALKDLDVELECSDTGCPPVTINAKGLAGGTAEVSGKISSQYLSALLMAAPLASGDITIKIKDELVSAPYVHMTIKLLEKFG 253
[Close]
BLAST of mRNA_M-pyrifera_M_contig10622.1346.1 vs. uniprot
Match: W7TSU8_9STRA (3-phosphoshikimate 1-carboxyvinyltransferase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TSU8_9STRA)

HSP 1 Score: 279 bits (714), Expect = 5.650e-90
Identity = 143/219 (65.30%), Postives = 174/219 (79.45%), Query Frame = 1 
Query:    1 ATPSMRLESLTVEPISLISGEMELPGSKSLSNRVLLLSALAEGTTNVENLLDSEDIQYMLGALETLKVTV-KSDLDAKTVEVVGNAGPFEVSDPTLLFLGNAGTAMRPLTAVMCAGKGEFVMDGTPRMRERPIVDLVDGLKQLGVDVTCSDTGCPPVTIKASGIKGGTTRVSGKISSQYLSALLMAAPLSEGEIVIEITDELVSAPYVHMTIKLMEKFG 654
            A  +  +E L V+PIS   GE+ELPGSKS+SNR+LLLSAL++GTT V+NLL SEDI+YM+ AL  L + + K+  +  TV+  G    F+   P  L+LGNAGTAMRPLTA +CAG G+F +DGTPRMRERPI DLVDGL+QLGVD+ CS TGCPPVTI+A G+ GG  R+SGKISSQYLSALLMAAPL+ G++ IEITDELVSAPYVHMT+KLM +FG
Sbjct:   72 AAGAQEMEQLVVQPISTFEGEIELPGSKSISNRILLLSALSQGTTVVDNLLQSEDIEYMIQALLDLGIKLEKTGENQWTVQ--GRGAAFDSDKPLELYLGNAGTAMRPLTAALCAGHGDFTLDGTPRMRERPISDLVDGLQQLGVDLACSPTGCPPVTIRARGLSGGIVRISGKISSQYLSALLMAAPLARGDVRIEITDELVSAPYVHMTVKLMARFG 288
[Close]
BLAST of mRNA_M-pyrifera_M_contig10622.1346.1 vs. uniprot
Match: A0A5J4Z8J0_PORPP (3-phosphoshikimate 1-carboxyvinyltransferase n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z8J0_PORPP)

HSP 1 Score: 273 bits (699), Expect = 6.750e-86
Identity = 143/212 (67.45%), Postives = 167/212 (78.77%), Query Frame = 1 
Query:   19 LESLTVEPISLISGEMELPGSKSLSNRVLLLSALAEGTTNVENLLDSEDIQYMLGALETLKVTVKSDLDAKTVEVVGNAGPFEVSDPTLLFLGNAGTAMRPLTAVMCAGKGEFVMDGTPRMRERPIVDLVDGLKQLGVDVTCSDTGCPPVTIKASGIKGGTTRVSGKISSQYLSALLMAAPLSEGEIVIEITDELVSAPYVHMTIKLMEKFG 654
            LESL +EPI  ISGE++LPGSKSLSNR+LLL+ALA GTT VENLLDS+D+QYML AL+ L V    D  AK   V G AG +  +   L FLGNAGTAMRPL A +CAG G FV+DGTPRMRERPI DLVD L+QLG  VTCSDTGCPPV ++A+G+ GG  RVSGKISSQYLSALLM APL++ E+ +EI DELVS PYV MT+ LM++FG
Sbjct:  136 LESLRLEPIGKISGEIDLPGSKSLSNRMLLLAALARGTTVVENLLDSDDVQYMLAALKELGVECSVDWAAKKAVVKGCAGAWPAAGAEL-FLGNAGTAMRPLAAAVCAGHGTFVLDGTPRMRERPIKDLVDALQQLGAKVTCSDTGCPPVRVEANGLPGGVARVSGKISSQYLSALLMVAPLAKSEVTLEIKDELVSVPYVLMTVNLMKRFG 346
[Close]
BLAST of mRNA_M-pyrifera_M_contig10622.1346.1 vs. uniprot
Match: A0A7S2VGI4_9STRA (3-phosphoshikimate 1-carboxyvinyltransferase (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2VGI4_9STRA)

HSP 1 Score: 268 bits (685), Expect = 2.340e-84
Identity = 138/214 (64.49%), Postives = 169/214 (78.97%), Query Frame = 1 
Query:   28 LTVEPISLISGEMELPGSKSLSNRVLLLSALAEGTTNVENLLDSEDIQYMLGALETLKVTVKSDLDAKT-VEVVGNAGPFEVSDPTL---LFLGNAGTAMRPLTAVMCAGKGEFVMDGTPRMRERPIVDLVDGLKQLGVDVTC-SDTGCPPVTIKASGIKGGTTRVSGKISSQYLSALLMAAPLSEGEIVIEITDELVSAPYVHMTIKLMEKFG 654
            LTV PI  + G + LPGSKSLSNR LLL+AL++G T VENLL+S+DI+YML AL+TLKV V+ D D KT V V G AGP +   P     LFLGNAGTAMRPL A +C GKG+FV+DG PRMRERPI DL+DGLKQLG DV+C  +TGCPPVTI A+G+ GGT  +SGK+SSQ+LS+LLMA+P+ +G++ I I DEL+SAPYV +TI LM+KFG
Sbjct:   87 LTVTPIKSLDGTVTLPGSKSLSNRCLLLAALSDGNTRVENLLESDDIRYMLEALDTLKVPVERDADDKTAVTVTGQAGPIDSPTPEESLELFLGNAGTAMRPLAAALCMGKGKFVLDGVPRMRERPIADLIDGLKQLGADVSCVEETGCPPVTINANGLNGGTASISGKMSSQFLSSLLMASPVVDGDVTIAIKDELISAPYVSLTIGLMKKFG 300
[Close]
BLAST of mRNA_M-pyrifera_M_contig10622.1346.1 vs. uniprot
Match: A0A7S4JM85_9STRA (3-phosphoshikimate 1-carboxyvinyltransferase n=3 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4JM85_9STRA)

HSP 1 Score: 266 bits (681), Expect = 1.270e-83
Identity = 140/216 (64.81%), Postives = 170/216 (78.70%), Query Frame = 1 
Query:   25 SLTVEPISLISGEMELPGSKSLSNRVLLLSALAEGTTNVENLLDSEDIQYMLGALETLKVTVKSDLDAKT-VEVVGNAGPFEV---SDPTL-LFLGNAGTAMRPLTAVMCAGKGEFVMDGTPRMRERPIVDLVDGLKQLGVDVTC-SDTGCPPVTIKASGIKGGTTRVSGKISSQYLSALLMAAPLSEGEIVIEITDELVSAPYVHMTIKLMEKFG 654
            SLTV PI  + G + LPGSKSLSNR LLL+AL++G T VENLL+S+DI+YML AL+ LKV V+ D +  T V V G AGP +     D TL LFLGNAGTAMRPLTA +C GKG+FV+DG PRMRERPI DL+DGL+QLG D TC  +TGCPPVTI A G+KGG   +SGK+SSQ+LS+LLMAAP+++G+I I I DEL+SAPYV +TI LM+KFG
Sbjct:   85 SLTVNPIKSLDGTVTLPGSKSLSNRCLLLAALSDGETRVENLLESDDIRYMLEALDALKVPVERDAEDNTAVTVTGQAGPIDSPLGQDETLELFLGNAGTAMRPLTAALCMGKGKFVLDGVPRMRERPIADLIDGLQQLGADATCVEETGCPPVTISAKGLKGGEASISGKMSSQFLSSLLMAAPVADGDITISIKDELISAPYVALTIGLMKKFG 300
[Close]
BLAST of mRNA_M-pyrifera_M_contig10622.1346.1 vs. uniprot
Match: K0T8D0_THAOC (3-phosphoshikimate 1-carboxyvinyltransferase n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0T8D0_THAOC)

HSP 1 Score: 266 bits (681), Expect = 1.410e-83
Identity = 137/214 (64.02%), Postives = 169/214 (78.97%), Query Frame = 1 
Query:   28 LTVEPISLISGEMELPGSKSLSNRVLLLSALAEGTTNVENLLDSEDIQYMLGALETLKVTVKSDLDAKT-VEVVGNAGPFEVSDP---TLLFLGNAGTAMRPLTAVMCAGKGEFVMDGTPRMRERPIVDLVDGLKQLGVDVTC-SDTGCPPVTIKASGIKGGTTRVSGKISSQYLSALLMAAPLSEGEIVIEITDELVSAPYVHMTIKLMEKFG 654
            LTV PI  + G + LPGSKSLSNR LLL+AL+EGTT VENLL+S+DI+YML AL+TLKV V+ D D KT V V G +GP +   P     LFLGNAGTAMRPL A +C G G+FV+DG PRMRERPI DL+DGL+QLG +VTC  +TGCPPVTI A G+ GGT  +SGK+SSQ+LS+LLMA+P+ +G++ I+I DEL+SAPYV +TI LM+KFG
Sbjct:   85 LTVTPIKSLDGTVTLPGSKSLSNRCLLLAALSEGTTRVENLLESDDIRYMLEALDTLKVPVERDEDDKTSVAVTGQSGPIDSPTPEETVELFLGNAGTAMRPLAAALCMGSGKFVLDGVPRMRERPIADLIDGLRQLGAEVTCVEETGCPPVTIDAEGLAGGTAEISGKMSSQFLSSLLMASPVVDGDVTIKIKDELISAPYVSLTIGLMKKFG 298
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig10622.1346.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LER1_ECTSI3.550e-13090.833-phosphoshikimate 1-carboxyvinyltransferase n=1 T... [more]
A0A836CIT3_9STRA5.620e-10376.283-phosphoshikimate 1-carboxyvinyltransferase n=1 T... [more]
A0A6V1NGJ7_HETAK2.160e-10172.433-phosphoshikimate 1-carboxyvinyltransferase n=1 T... [more]
A0A7S2XVK4_9STRA1.390e-9471.503-phosphoshikimate 1-carboxyvinyltransferase n=1 T... [more]
A0A7S1UKH8_9STRA2.570e-9169.913-phosphoshikimate 1-carboxyvinyltransferase n=1 T... [more]
W7TSU8_9STRA5.650e-9065.303-phosphoshikimate 1-carboxyvinyltransferase n=2 T... [more]
A0A5J4Z8J0_PORPP6.750e-8667.453-phosphoshikimate 1-carboxyvinyltransferase n=1 T... [more]
A0A7S2VGI4_9STRA2.340e-8464.493-phosphoshikimate 1-carboxyvinyltransferase (Frag... [more]
A0A7S4JM85_9STRA1.270e-8364.813-phosphoshikimate 1-carboxyvinyltransferase n=3 T... [more]
K0T8D0_THAOC1.410e-8364.023-phosphoshikimate 1-carboxyvinyltransferase n=1 T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig10622contigM-pyrifera_M_contig10622:122..6606 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score382.5
Seed ortholog evalue1.3e-103
Seed eggNOG ortholog2880.D8LER1
KEGG rclassRC00350
KEGG koko:K00800,ko:K10669
KEGG ReactionR03460
KEGG Pathwayko00400,ko01100,ko01110,ko01130,ko01230,map00400,map01100,map01110,map01130,map01230
KEGG ModuleM00022
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0003866,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0008150,GO:0008152,GO:0009058,GO:0009423,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009987,GO:0016053,GO:0016740,GO:0016765,GO:0019752,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0043648,GO:0043650,GO:0044237,GO:0044249,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046394,GO:0046417,GO:0071704,GO:1901576
EggNOG free text desc.shikimate 3-dehydrogenase (NADP ) activity
EggNOG OGsCOG0169@1,KOG0692@2759
EC2.5.1.19,2.7.1.160
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03016
Exons5
Model size657
Cds size645
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig10622.1346.1prot_M-pyrifera_M_contig10622.1346.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig10622 122..6594 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815572.1647666-CDS-M-pyrifera_M_contig10622:121..3551622815572.1647666-CDS-M-pyrifera_M_contig10622:121..355Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10622 122..355 -
1692277469.2954412-CDS-M-pyrifera_M_contig10622:121..3551692277469.2954412-CDS-M-pyrifera_M_contig10622:121..355Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10622 122..355 -
1622815572.1854155-CDS-M-pyrifera_M_contig10622:1132..12881622815572.1854155-CDS-M-pyrifera_M_contig10622:1132..1288Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10622 1133..1288 -
1692277469.3060534-CDS-M-pyrifera_M_contig10622:1132..12881692277469.3060534-CDS-M-pyrifera_M_contig10622:1132..1288Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10622 1133..1288 -
1622815572.1960974-CDS-M-pyrifera_M_contig10622:2634..27001622815572.1960974-CDS-M-pyrifera_M_contig10622:2634..2700Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10622 2635..2700 -
1692277469.3144562-CDS-M-pyrifera_M_contig10622:2634..27001692277469.3144562-CDS-M-pyrifera_M_contig10622:2634..2700Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10622 2635..2700 -
1622815572.210944-CDS-M-pyrifera_M_contig10622:5330..54051622815572.210944-CDS-M-pyrifera_M_contig10622:5330..5405Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10622 5331..5405 -
1692277469.3253372-CDS-M-pyrifera_M_contig10622:5330..54051692277469.3253372-CDS-M-pyrifera_M_contig10622:5330..5405Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10622 5331..5405 -
1622815572.2217805-CDS-M-pyrifera_M_contig10622:6480..65941622815572.2217805-CDS-M-pyrifera_M_contig10622:6480..6594Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10622 6481..6594 -
1692277469.3437326-CDS-M-pyrifera_M_contig10622:6480..65941692277469.3437326-CDS-M-pyrifera_M_contig10622:6480..6594Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10622 6481..6594 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815572.2358959-UTR-M-pyrifera_M_contig10622:6594..66061622815572.2358959-UTR-M-pyrifera_M_contig10622:6594..6606Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig10622 6595..6606 -
1692277469.3532033-UTR-M-pyrifera_M_contig10622:6594..66061692277469.3532033-UTR-M-pyrifera_M_contig10622:6594..6606Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig10622 6595..6606 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig10622.1346.1

>prot_M-pyrifera_M_contig10622.1346.1 ID=prot_M-pyrifera_M_contig10622.1346.1|Name=mRNA_M-pyrifera_M_contig10622.1346.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=215bp
MRLESLTVEPISLISGEMELPGSKSLSNRVLLLSALAEGTTNVENLLDSE
DIQYMLGALETLKVTVKSDLDAKTVEVVGNAGPFEVSDPTLLFLGNAGTA
MRPLTAVMCAGKGEFVMDGTPRMRERPIVDLVDGLKQLGVDVTCSDTGCP
PVTIKASGIKGGTTRVSGKISSQYLSALLMAAPLSEGEIVIEITDELVSA
PYVHMTIKLMEKFG*
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mRNA from alignment at M-pyrifera_M_contig10622:122..6606-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig10622.1346.1 ID=mRNA_M-pyrifera_M_contig10622.1346.1|Name=mRNA_M-pyrifera_M_contig10622.1346.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=6485bp|location=Sequence derived from alignment at M-pyrifera_M_contig10622:122..6606- (Macrocystis pyrifera P11B4 male)
GCGACTCCATCGATGCGCTTGGAGAGTCTCACGGTGGAACCTATCTCCCT
CATCTCGGGAGAGATGGAGCTGCCCGGCAGCAAGTCCCTCAGTAACCGCG
TTCTCCTGCTGAGCGCTTTGGCCGAGGTGATCCATTCCCTCGACCTGCCC
CCCCCCCCCATCGAAAGGGATGCGTGGTCAATGGTCAAATGACTGAGGCA
AGCACCAAATGAGTACGCCCCCCCCCCTGGCTCCAAGTCGGGGCCGTTTC
TCGGCCTTCTCTGTTTTGCTTTCGACAGTTGTGGTTTTGGGTGCGTTGGT
TCAAAGGACAAGGAGGTAGCATAGCAGAGGTTGGGCAGTGTTTCGGTGAG
CCTTGCAGGTTGTGTGGTGCCGTCGTCCTGCAGTGGTGCTGAGGGTTCGC
GTTGCCTTCCCGAGAGAGCGGAGCCCGGAGTGTACTTCAAAGGAGATAGG
GCGGGAGTTTAGCGCACCACGGCCCCACAGCTTGTTTTGGTGGTGGTGGT
GGTGGTGTTGGTGGTATTGGTGGTGTTAGTGGTGTTGTCTTCTTATGAAA
ACCTTACGGCTTCTCAACGGCAAGGAGAAGGGGTAGGATTTATTTCTACG
GCTTGTCCAGACGGTCGATAACCGGAAAAGTCCTCCGAGTAGAACTGGGG
AGTAATAGAGATTCATATATTACAACACAGTGCAATACCAGGTACAGTAA
GATGCACCGAGCACACCCAGGGTCCGTAGGTATTCTGTTTCTCCTTCCTC
AAGAGGTACACGGTTTCCATGCTGGCGGCATTTGGCGTCCACTGCCAGGT
GTAAGATGTTTGCCCCGAGTAGCCTCCGCGGAAAAGGTACAGTTTTTGTA
TGCGCGGGAACGCCCAAATTCGAACGAAAGGCAAGAGCGACCCCATGGAT
GTCTGTCTGTCTGTCTGTCTGTCTATCCTTGCCTCTGTCTGTCTATATGT
CTGTCTGTCTGTCTGCCTGTCCGTCTGTCTTTGCATGCCTGTTTGTCTGC
CACTCTGTCTGCCTGTGTCTCTATCTGTCTGTCTCTGTCTTTCTGTCTTC
CTGTCTGTCTGTCTGCCTGCCTGTCTGTCTGCCTGTCTGCCTGTCATGTC
TGCCTGTCGAGATGGCTACGAAGCTACGAATAGATATTGCCGTAGCTACT
GACGTTATCCTAATCCGACCGTAACCACCCCCTTTCGGGTGCTCTTTGAA
GGGCACTACCAACGTCGAGAACCTCCTGGACTCCGAGGACATCCAGTACA
TGTTGGGTGCGCTCGAGACACTCAAGGTGAGGTCATCAATCTCCAATCAC
AAAGAAATAGCTGGCACGTACATACGAGTACCTATACACGTTTCCTTTTT
TTCTTGTTTACCGGCGTGTCACGAACGAGCCGACACGTTTTTCCTTTTTT
CCTGTTTGGGTCCCTTGTCGGCCTTAAGACGCAGCGAACACGCCTCTGAA
CCCTATTCCGTGCTTCAATTTTTTTTCCCCACACTTTCTCCCAGCGGGTT
TTCCTAAAGGAAAAACGTGGGTGAAGTTTTTCAAGGGGTTACTGCAATCC
GCGCCTTGCTATCGCTCGCTCTCGAATCTGAGGCCCATATTGATAGTCCC
GTGTTTCGCGCCGCGGACGGCATGTTGTCACCGACGATTTGCACGAGTGC
CTGCTGTCATCCCCGGGACAAAAGACCTTTTGGGCAACAGCCACCTTAAC
CCATTTTGAACTGCGGTCCCGTTTATAGGACAAACTGCTTAGAATTTGGG
TAGTTTTGTGCCCCAAACGGGACTGCAGTCCAAAATGGGATGGATAACTG
GTTTTCGGACTCAGATAGCGACCTAAAAAACGACACGAAGTGCGCTCTTG
TCAAGCAGCTATGTATGTATAGGAAGAGAGCATTTCAGATTTTTTTTTCA
AGTATCATCATGATGCGCGCGTGTGTGTCTTTCGCAGCCTCTTATACCGC
AGTCCCGACACAGACTCTCATCACACCCTGTATGTATCCAAAGGGTGCTC
GACAAAAAGAGAAAACGAAAGAGACCCACACCCATTCCGAGTGCCGAAAT
GAAGAACAAACCAGTGCGTTCGGATTTCTGGACGAAATTCCGAAAAACAC
GTTTTTTTTCAGATTTGTATTTTACTTGATTTTAGTATATCCCCCTGTCT
GGGTCTACATGGCGCTCCGTACGTGAGCTATGAATAGAAACAACCGGGGT
ATCGTTTTTTTTCTTCTTGTTTTTTGGTGGTCGGTCACGCCGGGCGATCG
AGTTAGATCATTTGTGCGGGGTGGAGCGCCTTTGCTCCGCACAAGGGGAA
TGATCGTTTCACGCAGTGTACAGGCACCCAAGAGGTAGTTTCGTAGTACT
CCCATTGCTGGCTCTGGAAGTGGCCACACCGGAAAATAAATTAACTCGTT
GCAGCTGTCGTCCGTATGCAAGAAAGTCCGCCTCACAAGCGGCTCTTAGT
ACGATGCAGCTCACCCTTCATGCGATTCGCCCAACACCTCACGTTTCGCT
TCGCGCTTGGTGCAAGCAAGGTCTGCCTGGCCGATGAAAACCCGACGTTT
TCCGTCCCGGCATGGTAGGGGTGCGAGGGTCTATGTTCATACGAAGTACG
ACTACGGCCATGCATGACATCGAGCGCACCTCCCTTCCGCCCTGTCTGGG
TCTCGAACATGGGTAGTGAGGTGTCGGACTTTAGTTTTTTTCGTGAACCC
CTGCCTATATATCCCGGGAGAGGCAGCGCGGGCTGCTCGGTGCGGCCGCC
GATGCTGCATTGTATACTATGATCAAGTCATTTTTTCGGGCGACTCTTCC
CTCTGAAGCCCCAAGGGGACTTTTTGTATGACTCGTTTAGCGCTCAGAGG
CGGCAACCAAACAAGGAATGATGATATTTTCGGTAGGATGTGACCAACCG
TCTTCGAGTAGACTACTATTACTAGAGGGCGAGCTCGCTACAGCATGAGG
ACGAGGACCATCCCTGCGCGCGCGCGCGCTTGCGTACCTTATGTACCAGC
CTCTCTTTGCCGGATTCATTATATAGTCAACGTTTGATATTGACATCAGA
GTTCAAACTCGTTATGTATTGTATTTGGTGGCCAGAGTGCTCCTTTCGTT
GTACCTTAGTGTGAATGCCAACTTTATCATCCTCCGACCTAGCTGTGGCC
GGTGGTGCATTTGGCCTTTTTTGCTTGGCGGCTATTTTTTTTACTTAATA
AGGGTCGCTTTTTCGGGGTTTTTTTCACTCTCACATGTCAGCGAAAGGGT
TATAGCCCTTTTGCCACTCTCCTGATGCTTGACACCTCGAAAATATCATC
GATTTGCACAGTTCACGATCTAGATCCTTCGAGGCAGATAGATCTATGCC
CGATCTTGTACGATCTAGCTCGTATTGCCAGCTAGGACGCGTATAATCCG
CATGAACTACCGCGTGTTTTCTGTATTGGATCTGTACTATGTTGTGGCCA
CAGAACTTGTATCTCTCTAGGATTGAAGAATCGGCACGGGCACTGGTTGT
GCTGGATGTCGACGGGTAGAAGGAACGATTTAATGTGAAGAACACAACAA
ACAATATGCAGATTCTGCACTACCTCTCGTTACAGCAGACTAGGAACTAG
ATGATCTGTTGTAGATAGATCATCTATTGTAGATAGATCATCTATTGTAG
ATGTATCATCTGTTGTAGATAGATCATCTATTGTAGATATATAATCTGTT
GTAGATAGATCATCTAGATCATGATCTCTACTTCCAAGCAACCTGTCCCC
GAAACGTGGGTGCAGGCAGCTCCAAAGGCCAAAGGGGCTGCCGGTATAGG
TCACCTGAGTGGGCCCGCCCGCCTGCGGTACGCCCGCTGATCGCATAACT
TCTCCTGAACGCTCTGCCTCGCTTTTTGTCTCCTCCGGGCATTGTCGGTT
GAGCAGGTGACCGTGAAGAGTGACCTGGACGCCAAGACCGTCGAGGTTGT
GGGCAACGCGGGACCATTCGAGGTGTGCGTACAGAGGGGGTCGCGGTTTA
AGAGAGCTATCGATTTTCGAGATGTACCGCTTTTGACCCTTTTTGGTCTG
CGCTCCCATTTCGGGGACAGATTACTTGAAATTAGAGTCAGATATATGTT
ACGCACAGTGCAGGAGTCACAGGATTAGGAGGAGCCAATGACTTGGCACG
GGCACACTTGAAGCTGCTGCAGCTGTAGCGCCCGTTGCGGTTTAAGATAA
ATCTCGGGCTCAATAGAGATCGAATAGGCTTGACACACCCACCCATCTCT
TACCCCCCCCCCCCCCCACACCCCCCCCCCCCCCCACCCCCCCCCCCCCA
ACCCCCCCACCCCACCCCCCCCCCCCCCCCCACCCCACCCCACTCCAACC
TCCCAACCCACCCCCAACACCCACACCCCCCNNNNNNNNNNGGATGCGTG
GTCAATGGTCAAATGACTAAGGCAAGCAACAAATGAGTACGCCTCCCCCC
CCCCGCCCCCCGCTGTATACGTAGATACCAGGTAGTATATATGCATGGTA
TATACCTGTCAGATTTTCTCCTGCCGGCCGACGGAGCTCTTCGTCGGCTA
ATGTGCCAGGAGACCGCGGTTTGTTTTGGCCCCCTGGCCGACCACCCCCT
GTACTGAGACCAGTGCAATAACGCAAGGAGAGGCCCCGGCGCGCCCTAAA
GGACGGCTTTCAGGTTTTCTTGTACGTATTTCGGGGGACCATAGGAAATA
GGACCAAATATTGTTCGTAAAAATAGGTAAATATGTAGGTTTTCGTGTGT
ACCGTAGGTCCTACTTACTATGGTCCCCCGTAATAGTACAGTAGTTGTCC
CCTTATAGTGCAGGTCGAGTAGTGCCGGTTGCCCGCTATAGTGCCTGTGG
AATCGGCTGGCACAGATACTATAGGATTCAGCAGTACGGCAGTGTGCGGA
GGGATTAGTGCCGGTTGGCGCTATAATATTGCCAGTATTGTTGGCTGGCG
CATACGTACCGGCACTGCTGTATATAGAGGGACCCTACTGGAATACCATA
TTTGTTCGTGTGGAGAGCTCTCGCTAGTCTTGTTACGAATGGAATTCACC
ACAACGCCTCCACAGATGATGGAACTCCATGCGACATGTGTGGGCGAGCG
AGGACACTGGAGGCCACTGCGGACGACGCCTCCCCTCTTTCGCATGCCGT
TGAGAAACATGGCGCTGCGCTGGCCATCCCCTTACCGCCCCTCTCGCTGC
CGCGCTCCTTTTCTTGCGCTGTGCCTTTGCCGCGGTGCTGTGCTCTGCTG
TGCTGTGTTGTGCTGTGCCGTGCTGTGCTGTGGTGTCTATGCTGCGTCTT
TTCTTGCGCTGTGCCCAGGTGTCGGACCCCACACTGTTGTTTCTGGGCAA
CGCAGGCACCGCCATGCGGCCGCTGACGGCGGTCATGTGCGCGGGGAAAG
GGGAGTTCGTGATGGATGGGACCCCGAGAATGCGAGAAAGGCCTATCGTT
GACCTGGTGGACGGGCTCAAGCAGGTGGCGTGAATGCTTAAATCGGTCCG
TTTTTTGTGCGATTCGAGTATCGTGCAGCTCGGCTTTGGTTAGGTTTGGG
TTTGGTTCGAGTTTGGTTTGGGTTTGGGTTTGGCTTGGTTTGGGTTTGGT
TTGAGTTTTGTTTGGTTTGGTTTGGTTTGGTTTGATTTTGTTTGTTTTGG
TTCGTTTGGGTTTGGTTCGGTTTGGTTCGGTTTAGTGTGGTGTGGTTTGT
TTTGTTTGGTTTTGGTTTGGTTCGGTTCGGTTTGGTTCAGTTTGGTGTGG
TGTGGTTTGGTTCGGTTTGGTTTGGTTCTGTTCGGTTCGGTTTGCTTGGC
TTTGGTTCGGTTAGGTTCTGTTGGGTTCGGGTGTGGTTCGGTTCGAGATG
CACGCTACTATAGCGGTTCACTCAATATTTTCTGAGGCTTCTCGCCTGAA
AACCTGTGTTTATCAACCAGAAACGACTCGAAGAATACTGTTGTACTGTA
CTCTTATCTCGGTCACAAAATCCCTTGCCCACCCCGGGATCTACACCAAA
AAATCTTGTAAGACAAACGATATTGGATAGGCTCTCAGTTGAGAAGCCCA
CCAGTCAGAAGAAGCAAAAAATGCTCGAAACTACTAACCCATTGTAGCAC
GCCTCTCGATTCGGTTCCGTTCGGTTCCGATCGGTTCCGTTCGGTATCCA
GAACTAAATCGGCCAACCCTCGGCTGCCAACTGTTTAACAAACCCCTCCT
CTCCCCCCTCCACACCCCTTTCCCTCCCGCGGCTCACGCGCCCCATTCCA
GCTCGGTGTTGACGTCACTTGCTCTGACACGGGGTGCCCGCCGGTGACGA
TCAAGGCCTCGGGTATTAAGGGAGGAACGACGCGCGTCAGCGGCAAGATA
TCGTCGCAGTACCTCTCGGCTCTCCTCATGGCCGCGCCTCTGTCGGAGGG
CGAGATAGTGATCGAGATCACGGACGAGCTAGTGTCCGCCCCGTACGTGC
ACATGACCATCAAGCTCATGGAGAAGTTTGGGTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig10622:122..6606-

>mRNA_M-pyrifera_M_contig10622.1346.1 ID=mRNA_M-pyrifera_M_contig10622.1346.1|Name=mRNA_M-pyrifera_M_contig10622.1346.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1290bp|location=Sequence derived from alignment at M-pyrifera_M_contig10622:122..6606- (Macrocystis pyrifera P11B4 male)
ATGCGCTTGGAGAGTCTCACGGTGGAACCTATCTCCCTCATCTCGGGAGA
GATGGAGCTGCCCGGCAGCAAGTCCCTCAGTAACCGCGTTCTCCTGCTGA
GCGCTTTGGCCGAGATGCGCTTGGAGAGTCTCACGGTGGAACCTATCTCC
CTCATCTCGGGAGAGATGGAGCTGCCCGGCAGCAAGTCCCTCAGTAACCG
CGTTCTCCTGCTGAGCGCTTTGGCCGAGGGCACTACCAACGTCGAGAACC
TCCTGGACTCCGAGGACATCCAGTACATGTTGGGTGCGCTCGAGACACTC
AAGGGCACTACCAACGTCGAGAACCTCCTGGACTCCGAGGACATCCAGTA
CATGTTGGGTGCGCTCGAGACACTCAAGGTGACCGTGAAGAGTGACCTGG
ACGCCAAGACCGTCGAGGTTGTGGGCAACGCGGGACCATTCGAGGTGACC
GTGAAGAGTGACCTGGACGCCAAGACCGTCGAGGTTGTGGGCAACGCGGG
ACCATTCGAGGTGTCGGACCCCACACTGTTGTTTCTGGGCAACGCAGGCA
CCGCCATGCGGCCGCTGACGGCGGTCATGTGCGCGGGGAAAGGGGAGTTC
GTGATGGATGGGACCCCGAGAATGCGAGAAAGGCCTATCGTTGACCTGGT
GGACGGGCTCAAGCAGGTGTCGGACCCCACACTGTTGTTTCTGGGCAACG
CAGGCACCGCCATGCGGCCGCTGACGGCGGTCATGTGCGCGGGGAAAGGG
GAGTTCGTGATGGATGGGACCCCGAGAATGCGAGAAAGGCCTATCGTTGA
CCTGGTGGACGGGCTCAAGCAGCTCGGTGTTGACGTCACTTGCTCTGACA
CGGGGTGCCCGCCGGTGACGATCAAGGCCTCGGGTATTAAGGGAGGAACG
ACGCGCGTCAGCGGCAAGATATCGTCGCAGTACCTCTCGGCTCTCCTCAT
GGCCGCGCCTCTGTCGGAGGGCGAGATAGTGATCGAGATCACGGACGAGC
TAGTGTCCGCCCCGTACGTGCACATGACCATCAAGCTCATGGAGAAGTTT
GGGTGACTCGGTGTTGACGTCACTTGCTCTGACACGGGGTGCCCGCCGGT
GACGATCAAGGCCTCGGGTATTAAGGGAGGAACGACGCGCGTCAGCGGCA
AGATATCGTCGCAGTACCTCTCGGCTCTCCTCATGGCCGCGCCTCTGTCG
GAGGGCGAGATAGTGATCGAGATCACGGACGAGCTAGTGTCCGCCCCGTA
CGTGCACATGACCATCAAGCTCATGGAGAAGTTTGGGTGA
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