mRNA_M-pyrifera_M_contig106206.1345.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig106206.1345.1
Unique NamemRNA_M-pyrifera_M_contig106206.1345.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig106206.1345.1 vs. uniprot
Match: A0A8J4CNU5_9CHLO (Uncharacterized protein n=1 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4CNU5_9CHLO)

HSP 1 Score: 76.6 bits (187), Expect = 2.220e-13
Identity = 58/180 (32.22%), Postives = 81/180 (45.00%), Query Frame = 1
Query:    1 MQKAVRRRKTDAAKRAAAEICRGGVEGVIKVARRFPIMCLEDAVLHPGVFFAVWMMGAAGSHPTSPFTAWTPSSAHVSVLLDMVGELASSAIHDPIPHDIAPLKDFDATSTSLPAFA--------------------------LFIRAEFGGMRGDIEMLRRGASLWDQRCK-SLQPPPP 459
            +QKAVR  +   A RAA  + +    G  ++ RR  I+C+EDA+LHPG+ F VW+M A           +     H+  LL +V +LA   + D +P    P  D D+ +  +P  A                          L  RA +GGM GD+ M+R  A  W  R K S  PPPP
Sbjct:  380 LQKAVRLGRGSCAVRAALHLFKED-GGAAQLLRRLSIVCVEDAILHPGLPFVVWLMAAQAK-------GFVLGRTHLDALLCLVYQLAMVQVRDGLPD---PWNDGDSATVGIPVDATSQGPATLQQVDELALPAAETCLLKCLLFRASYGGMGGDVRMMRAFAGYWAARFKGSAAPPPP 548          
BLAST of mRNA_M-pyrifera_M_contig106206.1345.1 vs. uniprot
Match: A0A8J4CU81_9CHLO (Uncharacterized protein n=2 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4CU81_9CHLO)

HSP 1 Score: 76.6 bits (187), Expect = 2.250e-13
Identity = 58/180 (32.22%), Postives = 81/180 (45.00%), Query Frame = 1
Query:    1 MQKAVRRRKTDAAKRAAAEICRGGVEGVIKVARRFPIMCLEDAVLHPGVFFAVWMMGAAGSHPTSPFTAWTPSSAHVSVLLDMVGELASSAIHDPIPHDIAPLKDFDATSTSLPAFA--------------------------LFIRAEFGGMRGDIEMLRRGASLWDQRCK-SLQPPPP 459
            +QKAVR  +   A RAA  + +    G  ++ RR  I+C+EDA+LHPG+ F VW+M A           +     H+  LL +V +LA   + D +P    P  D D+ +  +P  A                          L  RA +GGM GD+ M+R  A  W  R K S  PPPP
Sbjct:  380 LQKAVRLGRGSCAVRAALHLFKED-GGAAQLLRRLSIVCVEDAILHPGLPFVVWLMAAQAK-------GFVLGRTHLDALLCLVYQLAMVQVRDGLPD---PWNDGDSATVGIPVDATSQGPATLQQVDELALPAAETCLLKCLLFRASYGGMGGDVRMMRAFAGYWAARFKGSAAPPPP 548          
BLAST of mRNA_M-pyrifera_M_contig106206.1345.1 vs. uniprot
Match: A0A8J4B716_9CHLO (Uncharacterized protein n=1 Tax=Volvox africanus TaxID=51714 RepID=A0A8J4B716_9CHLO)

HSP 1 Score: 72.4 bits (176), Expect = 6.380e-12
Identity = 59/176 (33.52%), Postives = 82/176 (46.59%), Query Frame = 1
Query:    1 MQKAVRRRKTDAAKRAAAEICRGGVEGVIKVARRFPIMCLEDAVLHPGVFFAVWMMGAAGSHPTSPFTAWTPSSAHVSVLLDMVGELASSAIHDPIPH-----DIAPL-KDFDATST-----------SLPAF------ALFIRAEFGGMRGDIEMLRRGASLWDQRCKSLQPPPP 459
            +QKAVR  +   A RAA  + +    G  ++ RR  I+C+EDA+LHPG+ F VW+M A           +     H+  LL +V +LA   + D +P      D A +    DATS            +LPA        L  RA +GGM GD+ M++  A  W  R K    PPP
Sbjct:   28 LQKAVRLGRGSCAVRAALHLFKED-GGAAQLLRRLSIVCVEDAILHPGLPFVVWLMAAQAK-------GFVLGRTHLDALLCLVYQLAMVQVRDGLPDPWDGGDSATVGTPVDATSQGPVTLQQVDELALPAAETCLVKCLLFRASYGGMGGDVRMMKIFAGYWAARFKGSAAPPP 195          
BLAST of mRNA_M-pyrifera_M_contig106206.1345.1 vs. uniprot
Match: A0A8J4B864_9CHLO (Uncharacterized protein n=1 Tax=Volvox africanus TaxID=51714 RepID=A0A8J4B864_9CHLO)

HSP 1 Score: 72.4 bits (176), Expect = 6.600e-12
Identity = 59/176 (33.52%), Postives = 82/176 (46.59%), Query Frame = 1
Query:    1 MQKAVRRRKTDAAKRAAAEICRGGVEGVIKVARRFPIMCLEDAVLHPGVFFAVWMMGAAGSHPTSPFTAWTPSSAHVSVLLDMVGELASSAIHDPIPH-----DIAPL-KDFDATST-----------SLPAF------ALFIRAEFGGMRGDIEMLRRGASLWDQRCKSLQPPPP 459
            +QKAVR  +   A RAA  + +    G  ++ RR  I+C+EDA+LHPG+ F VW+M A           +     H+  LL +V +LA   + D +P      D A +    DATS            +LPA        L  RA +GGM GD+ M++  A  W  R K    PPP
Sbjct:  281 LQKAVRLGRGSCAVRAALHLFKED-GGAAQLLRRLSIVCVEDAILHPGLPFVVWLMAAQAK-------GFVLGRTHLDALLCLVYQLAMVQVRDGLPDPWDGGDSATVGTPVDATSQGPVTLQQVDELALPAAETCLVKCLLFRASYGGMGGDVRMMKIFAGYWAARFKGSAAPPP 448          
BLAST of mRNA_M-pyrifera_M_contig106206.1345.1 vs. uniprot
Match: A0A6B2L588_9EUKA (Uncharacterized protein n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2L588_9EUKA)

HSP 1 Score: 72.0 bits (175), Expect = 7.200e-12
Identity = 49/156 (31.41%), Postives = 80/156 (51.28%), Query Frame = 1
Query:    1 MQKAVRRRKTDAAKRAAAEICRGGVEGVIKVARRFPIMCLEDAVLHPGVFFAVWMMGAAGSHPTSPFTAWTPSSAHVSVLLDMVGELASSAIHDPIPHDIAPLKDFDATSTSLPA----------FALFIRAEFGGMRGDIEMLRRGASLWDQRCK 438
            +QK VRRRK ++A R   ++     +   ++ RR PI+ LED  LH    + VW+M A           W  S + V ++L ++ E+A  +  DPIP  + P + F   +   P            +L +R  +GGM+GD+EML++ A +W++R K
Sbjct:   50 LQKCVRRRKAESAVRVGWQLL---CQDPDQLLRRLPIIILEDGCLHRHFSYIVWLMVATSK-------GWKLSKSQVVLILRVIFEVAEVSWRDPIP--MVPTEGFKNPALDRPEGTLCPIAHVLASLVLRVNYGGMKGDMEMLKKFAIVWNERYK 193          
BLAST of mRNA_M-pyrifera_M_contig106206.1345.1 vs. uniprot
Match: K0RE75_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RE75_THAOC)

HSP 1 Score: 70.5 bits (171), Expect = 2.870e-11
Identity = 55/169 (32.54%), Postives = 81/169 (47.93%), Query Frame = 1
Query:    1 MQKAVRRRKTDAAKRAAAEICRGGVEGVIKVARRFPIMCLEDAVLHPGVFFAVWMMGAAGSHPTSPFTAWTPSSAHVSVLLDMVGELASSAIHDPIPHDIAPLKDFDATSTSLPAFAL----------------FIRAEFGGMRGDIEMLRRGASLWDQRCKSLQPPPP 459
            +QK+ RRR  + A R A E+     +  I   RR PI+ LED+ LHP     VW+M A           + PS   ++ LL++V E+AS  + D +  DI    D  + S +LP+ AL                 +RA++GGM  DI+M+ R A +W  R    +  PP
Sbjct:  282 LQKSTRRRSGEQAVRVAMELIDRAYDQFI---RRLPIIILEDSTLHPDFGLLVWLMIAESK-------GYVPSRQILNRLLEIVYEVASCPLKDFLNKDIDCSSDSFSLSLNLPSSALSPNEKPGEEEVVVRSMLLRAQYGGMSCDIDMMLRFARIWRNRFVDARSKPP 440          
BLAST of mRNA_M-pyrifera_M_contig106206.1345.1 vs. uniprot
Match: A0A836BZZ6_9CHLO (Uncharacterized protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A836BZZ6_9CHLO)

HSP 1 Score: 68.9 bits (167), Expect = 1.060e-10
Identity = 46/148 (31.08%), Postives = 64/148 (43.24%), Query Frame = 1
Query:   97 RRFPIMCLEDAVLHPGVFFAVWMMGAAGSHPTSPFTAWTPSSAHVSVLLDMVGELASSAIHDPIPHD---------------------IAPLKDFDATSTSLPAF------ALFIRAEFGGMRGDIEMLRRGASLWDQRCKSLQPPPP 459
            RR  ++C+EDAVLHPG+   VW+M A           ++   AHV  LL +  +LA+  + D +PH                       APL      +  LP        +L +RA  GGM GD+ +LR  A+ W  R      PPP
Sbjct:  415 RRLSVVCVEDAVLHPGLPLVVWLMAAQAK-------GYSLGGAHVEALLGLTFQLAAVQVRDGLPHPWDGGDGAAPSAAGAGAAAQLLSAPLSLSAVDALRLPPAEAGLVKSLLLRAAHGGMAGDVRLLRGCAAYWAARFGGAAAPPP 555          
BLAST of mRNA_M-pyrifera_M_contig106206.1345.1 vs. uniprot
Match: A0A8J2S8C4_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2S8C4_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 2.060e-9
Identity = 51/145 (35.17%), Postives = 71/145 (48.97%), Query Frame = 1
Query:    1 MQKAVRRRKTDAAKRAAAEICRGGVE-------GVIKVARRFPIMCLEDAVLHPGVFFAVWMMGAAGSHPTSPFTAWTPSSAHVSVLLDMVGELASSAIHDPIPHDIAPLKDFDATSTSLPAFALFIRAEFGGMRGDIEMLRRGA 414
            +QK VRR   D A R+A E+   G+        G+  + RR P++ +ED+   P +  AVW M A      SP T + P++  V VL     +LA+    D  P    P K  +   T     AL IRA +GGM+GD+ MLR  A
Sbjct:  238 LQKCVRRGNVDLAVRSAHELA--GITFGPTDPAGIKMLVRRLPVIAVEDSAALPCIVPAVWYMMALSPTEKSPAT-YKPTAQDVLVLCACAAQLAAHGSRDRFP---PPRKGRNELPTDGVNLALLIRAAYGGMKGDVAMLRERA 376          
BLAST of mRNA_M-pyrifera_M_contig106206.1345.1 vs. uniprot
Match: A0A250X4N5_9CHLO (Uncharacterized protein n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250X4N5_9CHLO)

HSP 1 Score: 61.6 bits (148), Expect = 3.390e-8
Identity = 50/165 (30.30%), Postives = 76/165 (46.06%), Query Frame = 1
Query:    1 MQKAVRRRKTDAAKRAAAEICRGGVEGVIKVARRFPIMCLEDAVLHPGVFFAVWMMGAAGSHPTSPFTAWTPSSAHVSVLLDMVGELASSAIHDPIP---------------HDIAPLKDF--DATSTSLPAF-ALFIRAEFGGMRGDIEMLRRGASLWDQRCKS 441
            +QK VR  +   A R A  + +   E   ++ RR PI+CLEDA+LHP +   VW+M A           +       S +L    E+AS  + D +P               + I  +++   DA+   +    A+ +RA FGGM GD+ MLR  + LW  R +S
Sbjct:  202 LQKCVRLGRASCAARCAMHLMK---EDPSQLLRRLPIICLEDAILHPRLAVIVWIMAAQAK-------GYVFGLMLASEILKFTYEIASVKVKDILPTIEDNMRISTNQDGENSILQMENSLGDASKDEITLLNAINLRASFGGMSGDVVMLRGYSKLWSSRFRS 356          
BLAST of mRNA_M-pyrifera_M_contig106206.1345.1 vs. uniprot
Match: C1E065_MICCC (Uncharacterized protein n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1E065_MICCC)

HSP 1 Score: 60.5 bits (145), Expect = 6.820e-8
Identity = 42/133 (31.58%), Postives = 61/133 (45.86%), Query Frame = 1
Query:   97 RRFPIMCLEDAVLHPGVFFAVWMMGAAGSHPTSPFTAWTPSSAHVSVLLDMVG-----------------ELA----SSAIHDPIPHDIAPLKDFDATSTSLPAFALFIRAEFGGMRGDIEMLRRGASLWDQR 432
            RR PI+C+EDAVLHP +   VW M A   H    F       A V  + ++                   +LA    +S   DP+ +     +D  +  ++    AL +RA+FGG+RGD+ MLR  A  W +R
Sbjct:   20 RRLPIVCIEDAVLHPSLPLIVWFMAA---HSKGWFIPPEARGAAVRFIAEVAACPYKDRDLVAAIEADEEDLARRDTASGAADPLCNLAVATRDL-SNESACHVLALLVRAKFGGLRGDVGMLRGAAKAWRRR 148          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig106206.1345.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 23
Match NameE-valueIdentityDescription
A0A8J4CNU5_9CHLO2.220e-1332.22Uncharacterized protein n=1 Tax=Volvox reticulifer... [more]
A0A8J4CU81_9CHLO2.250e-1332.22Uncharacterized protein n=2 Tax=Volvox reticulifer... [more]
A0A8J4B716_9CHLO6.380e-1233.52Uncharacterized protein n=1 Tax=Volvox africanus T... [more]
A0A8J4B864_9CHLO6.600e-1233.52Uncharacterized protein n=1 Tax=Volvox africanus T... [more]
A0A6B2L588_9EUKA7.200e-1231.41Uncharacterized protein n=1 Tax=Arcella intermedia... [more]
K0RE75_THAOC2.870e-1132.54Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
A0A836BZZ6_9CHLO1.060e-1031.08Uncharacterized protein n=1 Tax=Edaphochlamys deba... [more]
A0A8J2S8C4_9STRA2.060e-935.17Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A250X4N5_9CHLO3.390e-830.30Uncharacterized protein n=1 Tax=Chlamydomonas eust... [more]
C1E065_MICCC6.820e-831.58Uncharacterized protein n=1 Tax=Micromonas commoda... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig106206contigM-pyrifera_M_contig106206:2..460 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score74.7
Seed ortholog evalue4.2e-11
Seed eggNOG ortholog242159.ABO97105
Hectar predicted targeting categoryother localisation
EggNOG OGs2DBB4@1,2S5HM@2759,34N2U@3041,381HY@33090
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-20_000370.2
Best tax levelChlorophyta
Best eggNOG OGNA|NA|NA
Exons1
Model size459
Cds size459
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815572.1128561-CDS-M-pyrifera_M_contig106206:1..4601622815572.1128561-CDS-M-pyrifera_M_contig106206:1..460Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig106206 2..460 +
1692277469.2833726-CDS-M-pyrifera_M_contig106206:1..4601692277469.2833726-CDS-M-pyrifera_M_contig106206:1..460Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig106206 2..460 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig106206.1345.1prot_M-pyrifera_M_contig106206.1345.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig106206 2..460 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig106206.1345.1

>prot_M-pyrifera_M_contig106206.1345.1 ID=prot_M-pyrifera_M_contig106206.1345.1|Name=mRNA_M-pyrifera_M_contig106206.1345.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=153bp
MQKAVRRRKTDAAKRAAAEICRGGVEGVIKVARRFPIMCLEDAVLHPGVF
FAVWMMGAAGSHPTSPFTAWTPSSAHVSVLLDMVGELASSAIHDPIPHDI
APLKDFDATSTSLPAFALFIRAEFGGMRGDIEMLRRGASLWDQRCKSLQP
PPP
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mRNA from alignment at M-pyrifera_M_contig106206:2..460+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig106206.1345.1 ID=mRNA_M-pyrifera_M_contig106206.1345.1|Name=mRNA_M-pyrifera_M_contig106206.1345.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=459bp|location=Sequence derived from alignment at M-pyrifera_M_contig106206:2..460+ (Macrocystis pyrifera P11B4 male)
ATGCAAAAAGCAGTGAGAAGGAGGAAAACGGACGCCGCAAAGAGAGCTGC GGCTGAAATTTGTCGTGGAGGCGTGGAAGGAGTGATTAAAGTGGCTCGTC GCTTTCCCATTATGTGTTTAGAAGATGCAGTGTTGCATCCTGGAGTGTTC TTTGCTGTTTGGATGATGGGAGCTGCTGGAAGTCACCCAACATCACCTTT CACTGCATGGACACCTTCAAGTGCACATGTGAGTGTATTGTTGGACATGG TAGGAGAGTTGGCATCTTCTGCCATCCATGACCCCATTCCTCACGACATC GCCCCCCTCAAAGACTTTGATGCAACCTCAACTTCACTCCCTGCCTTTGC TCTCTTCATTCGAGCTGAATTCGGAGGGATGCGGGGTGATATTGAAATGC TTCGTCGTGGTGCTTCCCTCTGGGATCAAAGGTGTAAATCTCTCCAACCT CCTCCCCCT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig106206:2..460+

>mRNA_M-pyrifera_M_contig106206.1345.1 ID=mRNA_M-pyrifera_M_contig106206.1345.1|Name=mRNA_M-pyrifera_M_contig106206.1345.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=918bp|location=Sequence derived from alignment at M-pyrifera_M_contig106206:2..460+ (Macrocystis pyrifera P11B4 male)
ATGCAAAAAGCAGTGAGAAGGAGGAAAACGGACGCCGCAAAGAGAGCTGC
GGCTGAAATTTGTCGTGGAGGCGTGGAAGGAGTGATTAAAGTGGCTCGTC
GCTTTCCCATTATGTGTTTAGAAGATGCAGTGTTGCATCCTGGAGTGTTC
TTTGCTGTTTGGATGATGGGAGCTGCTGGAAGTCACCCAACATCACCTTT
CACTGCATGGACACCTTCAAGTGCACATGTGAGTGTATTGTTGGACATGG
TAGGAGAGTTGGCATCTTCTGCCATCCATGACCCCATTCCTCACGACATC
GCCCCCCTCAAAGACTTTGATGCAACCTCAACTTCACTCCCTGCCTTTGC
TCTCTTCATTCGAGCTGAATTCGGAGGGATGCGGGGTGATATTGAAATGC
TTCGTCGTGGTGCTTCCCTCTGGGATCAAAGGTGTAAATCTCTCCAACCT
CCTCCCCCTATGCAAAAAGCAGTGAGAAGGAGGAAAACGGACGCCGCAAA
GAGAGCTGCGGCTGAAATTTGTCGTGGAGGCGTGGAAGGAGTGATTAAAG
TGGCTCGTCGCTTTCCCATTATGTGTTTAGAAGATGCAGTGTTGCATCCT
GGAGTGTTCTTTGCTGTTTGGATGATGGGAGCTGCTGGAAGTCACCCAAC
ATCACCTTTCACTGCATGGACACCTTCAAGTGCACATGTGAGTGTATTGT
TGGACATGGTAGGAGAGTTGGCATCTTCTGCCATCCATGACCCCATTCCT
CACGACATCGCCCCCCTCAAAGACTTTGATGCAACCTCAACTTCACTCCC
TGCCTTTGCTCTCTTCATTCGAGCTGAATTCGGAGGGATGCGGGGTGATA
TTGAAATGCTTCGTCGTGGTGCTTCCCTCTGGGATCAAAGGTGTAAATCT
CTCCAACCTCCTCCCCCT
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