mRNA_M-pyrifera_M_contig106204.1344.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig106204.1344.1
Unique NamemRNA_M-pyrifera_M_contig106204.1344.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig106204.1344.1 vs. uniprot
Match: A0A5A8DRL1_CAFRO (Uncharacterized protein n=3 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DRL1_CAFRO)

HSP 1 Score: 118 bits (295), Expect = 1.240e-31
Identity = 55/90 (61.11%), Postives = 74/90 (82.22%), Query Frame = 1
Query:    1 VGEA-GIGLEELKELLRDNDLTGFDPVAEAFKVYDPAGTGYADPAALRDVFRRLGFGDLSDDDMAVLLATADKDKDGKIGIDDFRRIIQV 267
            +GEA  + L++LK+LL DND+ GFDPVAEAFKVYDP+GTG+  P+ LRD+F++LGF DL+DDDM VLL TAD D+DG+I ++DFR ++  
Sbjct:   86 LGEARSMTLKDLKDLLADNDVAGFDPVAEAFKVYDPSGTGFVQPSVLRDIFKKLGFDDLNDDDMRVLLDTADGDRDGRISLEDFRTMLDA 175          
BLAST of mRNA_M-pyrifera_M_contig106204.1344.1 vs. uniprot
Match: A0A7S2S2D3_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S2D3_9STRA)

HSP 1 Score: 106 bits (265), Expect = 6.820e-27
Identity = 49/87 (56.32%), Postives = 66/87 (75.86%), Query Frame = 1
Query:    7 EAGIGLEELKELLRDNDLTGFDPVAEAFKVYDPAGTGYADPAALRDVFRRLGFGDLSDDDMAVLLATADKDKDGKIGIDDFRRIIQV 267
            +A + L++LK+LL DN++T FDPVAEAFKVYDP GTG+ D   LR +F+ LGFG++SD+D+ VL+ T D D DGKI + DFR +I  
Sbjct:   77 KAAMSLDDLKDLLLDNEVTNFDPVAEAFKVYDPQGTGFVDTEVLRTMFQDLGFGEVSDEDLQVLVQTGDADHDGKISLSDFRNMIHA 163          
BLAST of mRNA_M-pyrifera_M_contig106204.1344.1 vs. uniprot
Match: A0A0G4EPG1_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4EPG1_VITBC)

HSP 1 Score: 105 bits (263), Expect = 9.870e-27
Identity = 49/85 (57.65%), Postives = 66/85 (77.65%), Query Frame = 1
Query:    7 EAGIGLEELKELLRDNDLTGFDPVAEAFKVYDPAGTGYADPAALRDVFRRLGFGDLSDDDMAVLLATADKDKDGKIGIDDFRRII 261
            ++ IG +EL +LL+DN LT FDPV EAFKVYDP  TG+ D A ++  F++LG+GDLS +DM +L+ TAD D DGKIG+DDFR ++
Sbjct:   97 QSEIGFDELYDLLKDNQLTNFDPVREAFKVYDPQETGFVDLAVVKQCFQQLGYGDLSAEDMRILIQTADADGDGKIGLDDFRLMV 181          
BLAST of mRNA_M-pyrifera_M_contig106204.1344.1 vs. uniprot
Match: A0A7S2C3J7_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2C3J7_9STRA)

HSP 1 Score: 105 bits (261), Expect = 4.700e-26
Identity = 46/80 (57.50%), Postives = 65/80 (81.25%), Query Frame = 1
Query:   22 LEELKELLRDNDLTGFDPVAEAFKVYDPAGTGYADPAALRDVFRRLGFGDLSDDDMAVLLATADKDKDGKIGIDDFRRII 261
            L++L+ELL DN++T FDPVAEAFKVYDP GTG+ D   LRD+F+ LGFG+++D+D+ +L+ T D D+DGKI + DFR ++
Sbjct:   90 LQDLRELLLDNEVTNFDPVAEAFKVYDPEGTGFVDHKVLRDMFQNLGFGEVTDEDLQILVETGDVDQDGKISLSDFRNML 169          
BLAST of mRNA_M-pyrifera_M_contig106204.1344.1 vs. uniprot
Match: A0A7S2DSQ3_9DINO (Calmodulin n=1 Tax=Alexandrium andersonii TaxID=327968 RepID=A0A7S2DSQ3_9DINO)

HSP 1 Score: 102 bits (254), Expect = 1.650e-25
Identity = 47/82 (57.32%), Postives = 62/82 (75.61%), Query Frame = 1
Query:   16 IGLEELKELLRDNDLTGFDPVAEAFKVYDPAGTGYADPAALRDVFRRLGFGDLSDDDMAVLLATADKDKDGKIGIDDFRRII 261
            I  EEL  LL+DN LT FDPV EAFKVYDP GTG+ D   ++  F+ LG+GD+SD+D  ++L TAD DKDG+IG++DFR ++
Sbjct:   80 ITFEELYALLKDNQLTNFDPVKEAFKVYDPHGTGFIDMDVVKTFFKELGYGDISDEDAKIILETADGDKDGRIGLEDFRMMV 161          
BLAST of mRNA_M-pyrifera_M_contig106204.1344.1 vs. uniprot
Match: F0YPY1_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YPY1_AURAN)

HSP 1 Score: 101 bits (251), Expect = 1.860e-25
Identity = 46/80 (57.50%), Postives = 61/80 (76.25%), Query Frame = 1
Query:   22 LEELKELLRDNDLTGFDPVAEAFKVYDPAGTGYADPAALRDVFRRLGFGDLSDDDMAVLLATADKDKDGKIGIDDFRRII 261
            LE+LKELL +N++  FDPVAEAFKVYDP GTG+ D   LR +F  LGFG+++DDD+ +L  T D D DGKI + DFR+++
Sbjct:   64 LEDLKELLLENEVKNFDPVAEAFKVYDPDGTGFVDSNVLRSIFENLGFGEITDDDLTILTETGDVDGDGKISLMDFRKML 143          
BLAST of mRNA_M-pyrifera_M_contig106204.1344.1 vs. uniprot
Match: A0A0G4IEX6_9ALVE (Uncharacterized protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4IEX6_9ALVE)

HSP 1 Score: 102 bits (253), Expect = 2.280e-25
Identity = 46/82 (56.10%), Postives = 62/82 (75.61%), Query Frame = 1
Query:   16 IGLEELKELLRDNDLTGFDPVAEAFKVYDPAGTGYADPAALRDVFRRLGFGDLSDDDMAVLLATADKDKDGKIGIDDFRRII 261
            I  +EL  LL+DN LT FDPV EAFKVYDP  TG+ D   +++ F+ LG+GD+S+DD  +LL TAD DKDG+IG++DFR ++
Sbjct:   93 ITFDELYNLLKDNQLTNFDPVKEAFKVYDPLDTGFVDMNVVKEFFKNLGYGDISEDDAKILLQTADADKDGRIGLEDFRMMV 174          
BLAST of mRNA_M-pyrifera_M_contig106204.1344.1 vs. uniprot
Match: A0A7S3HEY3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HEY3_9STRA)

HSP 1 Score: 100 bits (250), Expect = 2.560e-25
Identity = 47/79 (59.49%), Postives = 59/79 (74.68%), Query Frame = 1
Query:   16 IGLEELKELLRDNDLTGFDPVAEAFKVYDPAGTGYADPAALRDVFRRLGFGDLSDDDMAVLLATADKDKDGKIGIDDFR 252
            I  EEL  LL+DN LT FDPV EAFKVYDP  TG+ D   ++  F+ LG+GD+SD+D  ++L TAD DKDG+IG+DDFR
Sbjct:   64 ITFEELYALLKDNQLTNFDPVKEAFKVYDPHNTGFVDMDMIKSFFKDLGYGDISDEDAKIILETADSDKDGRIGLDDFR 142          
BLAST of mRNA_M-pyrifera_M_contig106204.1344.1 vs. uniprot
Match: A0A835ZDH5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDH5_9STRA)

HSP 1 Score: 102 bits (253), Expect = 3.760e-25
Identity = 47/79 (59.49%), Postives = 62/79 (78.48%), Query Frame = 1
Query:   22 LEELKELLRDNDLTGFDPVAEAFKVYDPAGTGYADPAALRDVFRRLGFGDLSDDDMAVLLATADKDKDGKIGIDDFRRI 258
            L +L+ELL DN++T FDPVAEAFK YDP GTGY D   LR +F  LGFGD+++DD+A+L+  AD D DG+I ++DFRR+
Sbjct:   93 LNDLRELLVDNEVTDFDPVAEAFKAYDPDGTGYVDVEVLRTIFSNLGFGDINNDDLAILVEAADVDGDGQISLNDFRRM 171          
BLAST of mRNA_M-pyrifera_M_contig106204.1344.1 vs. uniprot
Match: A0A0M0JY82_9EUKA (Uncharacterized protein n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JY82_9EUKA)

HSP 1 Score: 101 bits (252), Expect = 4.050e-25
Identity = 45/94 (47.87%), Postives = 68/94 (72.34%), Query Frame = 1
Query:    1 VGEAGIGLEELKELLRDNDLTGFDPVAEAFKVYDPAGTGYADPAALRDVFRRLGFGDLSDDDMAVLLATADKDKDGKIGIDDFRRIIQVPGGPK 282
            +GE     + L++LL  NDL  +DPV EAF+ YDP GTG+ADP  LR +F  LG+G ++++D+ VL+ TAD D+DGKIG++DFR++++    P+
Sbjct:   73 LGEGPFTKDSLRKLLATNDLGTYDPVREAFRAYDPNGTGFADPEMLRSIFETLGYGPINEEDIKVLIETADADRDGKIGLEDFRKMMKTGARPE 166          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig106204.1344.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5A8DRL1_CAFRO1.240e-3161.11Uncharacterized protein n=3 Tax=Cafeteria roenberg... [more]
A0A7S2S2D3_9STRA6.820e-2756.32Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A0G4EPG1_VITBC9.870e-2757.65Uncharacterized protein n=2 Tax=Vitrella brassicaf... [more]
A0A7S2C3J7_9STRA4.700e-2657.50Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S2DSQ3_9DINO1.650e-2557.32Calmodulin n=1 Tax=Alexandrium andersonii TaxID=32... [more]
F0YPY1_AURAN1.860e-2557.50Uncharacterized protein (Fragment) n=1 Tax=Aureoco... [more]
A0A0G4IEX6_9ALVE2.280e-2556.10Uncharacterized protein n=1 Tax=Chromera velia CCM... [more]
A0A7S3HEY3_9STRA2.560e-2559.49Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A835ZDH5_9STRA3.760e-2559.49Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A0M0JY82_9EUKA4.050e-2547.87Uncharacterized protein n=1 Tax=Chrysochromulina t... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig106204contigM-pyrifera_M_contig106204:7..288 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score101.3
Seed ortholog evalue2.5e-19
Seed eggNOG ortholog44056.XP_009042472.1
KEGG koko:K02183
KEGG Pathwayko04014,ko04015,ko04016,ko04020,ko04022,ko04024,ko04070,ko04114,ko04218,ko04261,ko04270,ko04371,ko04626,ko04713,ko04720,ko04722,ko04728,ko04740,ko04744,ko04745,ko04750,ko04910,ko04912,ko04915,ko04916,ko04921,ko04922,ko04924,ko04925,ko04970,ko04971,ko05010,ko05031,ko05034,ko05133,ko05152,ko05167,ko05200,ko05214,ko05418,map04014,map04015,map04016,map04020,map04022,map04024,map04070,map04114,map04218,map04261,map04270,map04371,map04626,map04713,map04720,map04722,map04728,map04740,map04744,map04745,map04750,map04910,map04912,map04915,map04916,map04921,map04922,map04924,map04925,map04970,map04971,map05010,map05031,map05034,map05133,map05152,map05167,map05200,map05214,map05418
Hectar predicted targeting categoryother localisation
EggNOG OGs2BWVD@1,2S374@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01009,ko03036,ko04131,ko04147
Exons1
Model size282
Cds size282
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815572.0785587-CDS-M-pyrifera_M_contig106204:6..2881622815572.0785587-CDS-M-pyrifera_M_contig106204:6..288Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig106204 7..288 +
1692277469.2708557-CDS-M-pyrifera_M_contig106204:6..2881692277469.2708557-CDS-M-pyrifera_M_contig106204:6..288Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig106204 7..288 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig106204.1344.1prot_M-pyrifera_M_contig106204.1344.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig106204 7..288 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig106204.1344.1

>prot_M-pyrifera_M_contig106204.1344.1 ID=prot_M-pyrifera_M_contig106204.1344.1|Name=mRNA_M-pyrifera_M_contig106204.1344.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=94bp
VGEAGIGLEELKELLRDNDLTGFDPVAEAFKVYDPAGTGYADPAALRDVF
RRLGFGDLSDDDMAVLLATADKDKDGKIGIDDFRRIIQVPGGPK
back to top

mRNA from alignment at M-pyrifera_M_contig106204:7..288+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig106204.1344.1 ID=mRNA_M-pyrifera_M_contig106204.1344.1|Name=mRNA_M-pyrifera_M_contig106204.1344.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=282bp|location=Sequence derived from alignment at M-pyrifera_M_contig106204:7..288+ (Macrocystis pyrifera P11B4 male)
GTTGGGGAAGCTGGGATTGGGCTGGAAGAACTCAAGGAACTGCTGCGAGA CAATGACCTCACCGGGTTTGACCCCGTAGCAGAGGCATTCAAGGTCTACG ACCCTGCAGGGACTGGATATGCTGACCCAGCTGCTCTCAGAGACGTCTTT CGGCGATTGGGGTTTGGAGATCTCAGCGATGACGACATGGCTGTGTTGCT CGCGACAGCAGACAAGGACAAGGACGGGAAAATCGGAATCGATGACTTTA GAAGAATCATACAAGTGCCAGGAGGACCGAAA
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig106204:7..288+

>mRNA_M-pyrifera_M_contig106204.1344.1 ID=mRNA_M-pyrifera_M_contig106204.1344.1|Name=mRNA_M-pyrifera_M_contig106204.1344.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=564bp|location=Sequence derived from alignment at M-pyrifera_M_contig106204:7..288+ (Macrocystis pyrifera P11B4 male)
GTTGGGGAAGCTGGGATTGGGCTGGAAGAACTCAAGGAACTGCTGCGAGA
CAATGACCTCACCGGGTTTGACCCCGTAGCAGAGGCATTCAAGGTCTACG
ACCCTGCAGGGACTGGATATGCTGACCCAGCTGCTCTCAGAGACGTCTTT
CGGCGATTGGGGTTTGGAGATCTCAGCGATGACGACATGGCTGTGTTGCT
CGCGACAGCAGACAAGGACAAGGACGGGAAAATCGGAATCGATGACTTTA
GAAGAATCATACAAGTGCCAGGAGGACCGAAAGTTGGGGAAGCTGGGATT
GGGCTGGAAGAACTCAAGGAACTGCTGCGAGACAATGACCTCACCGGGTT
TGACCCCGTAGCAGAGGCATTCAAGGTCTACGACCCTGCAGGGACTGGAT
ATGCTGACCCAGCTGCTCTCAGAGACGTCTTTCGGCGATTGGGGTTTGGA
GATCTCAGCGATGACGACATGGCTGTGTTGCTCGCGACAGCAGACAAGGA
CAAGGACGGGAAAATCGGAATCGATGACTTTAGAAGAATCATACAAGTGC
CAGGAGGACCGAAA
back to top