mRNA_M-pyrifera_M_contig106186.1341.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig106186.1341.1
Unique NamemRNA_M-pyrifera_M_contig106186.1341.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig106186.1341.1 vs. uniprot
Match: A0A7S0PCT1_CAFRO (Hypothetical protein (Fragment) n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A7S0PCT1_CAFRO)

HSP 1 Score: 134 bits (336), Expect = 6.920e-38
Identity = 68/108 (62.96%), Postives = 81/108 (75.00%), Query Frame = 1 
Query:    1 AGMAGGFTEALCLQPLDVAKTRLQLDSTGKYRGLFHTVRTIASEEGVRALYKGLTVFQVHLISKYALRFGSFQYFKSLMGAGNSKGGDGLRNLGAGLMAGVTEAILIV 324
            AGM  G TEA CLQPLDV KTRLQLD+ G+Y+G+ H +RTIA+EEG  ALYKGLT F  HL  KYALRFGSF +FK+L+G      G+  +N  AGL AG+TEAI+IV
Sbjct:   50 AGMLAGVTEACCLQPLDVTKTRLQLDNVGRYKGMVHGLRTIAAEEGAGALYKGLTPFVTHLTLKYALRFGSFGFFKNLLGVRADGEGEAWKNFTAGLFAGLTEAIIIV 157
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BLAST of mRNA_M-pyrifera_M_contig106186.1341.1 vs. uniprot
Match: A0A812Q505_9DINO (SFC1 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812Q505_9DINO)

HSP 1 Score: 135 bits (339), Expect = 1.750e-36
Identity = 73/109 (66.97%), Postives = 83/109 (76.15%), Query Frame = 1 
Query:    1 AGMAGGFTEALCLQPLDVAKTRLQLDSTGKYRGLFHTVRTIASEEGVRALYKGLTVFQVHLISKYALRFGSFQYFKSLMGAGN-SKGGDGLRNLGAGLMAGVTEAILIV 324
            AGMAGG  EA  LQPLD AKTRLQLDSTGKYRGL H  RTIA+EEGV ALYKGL+ F +HL +KYA+RFG F Y K+ MG  + ++     RN  AGL+AGVTEAILIV
Sbjct:   26 AGMAGGVAEACALQPLDTAKTRLQLDSTGKYRGLLHCTRTIAAEEGVLALYKGLSPFVMHLTTKYAMRFGVFGYIKNAMGGSSGTERQQAARNFTAGLVAGVTEAILIV 134
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BLAST of mRNA_M-pyrifera_M_contig106186.1341.1 vs. uniprot
Match: A0A5A8DJ84_CAFRO (Uncharacterized protein n=3 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DJ84_CAFRO)

HSP 1 Score: 133 bits (335), Expect = 6.720e-36
Identity = 67/108 (62.04%), Postives = 81/108 (75.00%), Query Frame = 1 
Query:    1 AGMAGGFTEALCLQPLDVAKTRLQLDSTGKYRGLFHTVRTIASEEGVRALYKGLTVFQVHLISKYALRFGSFQYFKSLMGAGNSKGGDGLRNLGAGLMAGVTEAILIV 324
            AGM  G TEA CLQPLDV KTRLQLD+ G+Y+G+ H +RTIA+EEG  ALYKGLT F  HL  KYALRFGSF +FK+L+G      G+  +N  AGL AG+TEA++IV
Sbjct:   32 AGMLAGVTEACCLQPLDVTKTRLQLDNVGRYKGMVHGLRTIATEEGAGALYKGLTPFVTHLTLKYALRFGSFGFFKNLLGVRADGEGEAWKNFTAGLFAGLTEAVIIV 139
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BLAST of mRNA_M-pyrifera_M_contig106186.1341.1 vs. uniprot
Match: A0A7S3PR75_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3PR75_9STRA)

HSP 1 Score: 123 bits (309), Expect = 5.850e-32
Identity = 64/108 (59.26%), Postives = 74/108 (68.52%), Query Frame = 1 
Query:    1 AGMAGGFTEALCLQPLDVAKTRLQLDSTGKYRGLFHTVRTIASEEGVRALYKGLTVFQVHLISKYALRFGSFQYFKSLMGAGNSKGGDGLRNLGAGLMAGVTEAILIV 324
            AGM GG TEA+CLQPLDVAKTRLQLD  GKY G+F+ + TIA EEG  ALYKGLT F  HL  KYA+RFG F+ FK ++GA  +       N  AGL  G  EA +IV
Sbjct:   41 AGMCGGVTEAVCLQPLDVAKTRLQLDKAGKYTGMFNCLGTIAKEEGASALYKGLTPFVTHLTLKYAVRFGMFEQFKRMLGADKNGNASAKVNFTAGLAVGCLEATMIV 148
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BLAST of mRNA_M-pyrifera_M_contig106186.1341.1 vs. uniprot
Match: A0A2V0PL62_9CHLO (Mitochondrial succinate-fumarate transporter n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0PL62_9CHLO)

HSP 1 Score: 116 bits (291), Expect = 8.220e-31
Identity = 62/108 (57.41%), Postives = 75/108 (69.44%), Query Frame = 1 
Query:    1 AGMAGGFTEALCLQPLDVAKTRLQLDSTGKYRGLFHTVRTIASEEGVRALYKGLTVFQVHLISKYALRFGSFQYFKSLMGAGNSKGGDGLRNLGAGLMAGVTEAILIV 324
            AG  GG  EA CLQP+DV KTRLQLD+ GKYRG+    RT+ +EEGVRAL+KGLT F  HL  KYALR GS   +++ +   N K  D  R + AG MAG+TEA+LIV
Sbjct:   24 AGSMGGVVEACCLQPIDVIKTRLQLDTAGKYRGIMDCGRTVVAEEGVRALWKGLTPFATHLTLKYALRMGSNSVYQTALRDANGKLTDA-RRMAAGFMAGITEALLIV 130
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BLAST of mRNA_M-pyrifera_M_contig106186.1341.1 vs. uniprot
Match: A0A6G0XJP4_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XJP4_9STRA)

HSP 1 Score: 119 bits (298), Expect = 1.690e-30
Identity = 66/109 (60.55%), Postives = 78/109 (71.56%), Query Frame = 1 
Query:    1 AGMAGGFTEALCLQPLDVAKTRLQLDSTGKYRGLFHTVRTIASEEGVRALYKGLTVFQVHLISKYALRFGSFQYFKSLMGA-GNSKGGDGLRNLGAGLMAGVTEAILIV 324
            AGMAGG  EA  LQPLDV KTRLQLD TG Y+G+FH  +TI   EG  ALYKGLT F +HL  KYALRFGSF +FK L+GA   +K  +G+ N  AGL+ G  E++LIV
Sbjct:   37 AGMAGGVVEACVLQPLDVTKTRLQLDRTGVYKGMFHCGKTIYLTEGGLALYKGLTPFVMHLTLKYALRFGSFAWFKELLGAKAGTKASNGV-NFSAGLLTGCLESVLIV 144
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BLAST of mRNA_M-pyrifera_M_contig106186.1341.1 vs. uniprot
Match: A0A0D2NJI4_9CHLO (Succinate/fumarate transporter n=1 Tax=Monoraphidium neglectum TaxID=145388 RepID=A0A0D2NJI4_9CHLO)

HSP 1 Score: 117 bits (294), Expect = 2.850e-30
Identity = 63/104 (60.58%), Postives = 74/104 (71.15%), Query Frame = 1 
Query:   13 GGFTEALCLQPLDVAKTRLQLDSTGKYRGLFHTVRTIASEEGVRALYKGLTVFQVHLISKYALRFGSFQYFKSLMGAGNSKGGDGLRNLGAGLMAGVTEAILIV 324
            GG  EA CLQP+DV KTRLQLD  GKY G+ H  RT+ +EEGVRAL+KGLT F  HL  KYALR GS   ++SL+   + K  D LR  GAG MAG+TEA+LIV
Sbjct:    2 GGVVEACCLQPIDVIKTRLQLDKVGKYHGIVHCGRTVIAEEGVRALWKGLTPFATHLTLKYALRMGSNSVYQSLLRDKDGKLTD-LRRAGAGFMAGITEALLIV 104
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BLAST of mRNA_M-pyrifera_M_contig106186.1341.1 vs. uniprot
Match: A0A024T7P3_9STRA (Uncharacterized protein n=6 Tax=Aphanomyces TaxID=100860 RepID=A0A024T7P3_9STRA)

HSP 1 Score: 117 bits (294), Expect = 6.460e-30
Identity = 62/108 (57.41%), Postives = 72/108 (66.67%), Query Frame = 1 
Query:    1 AGMAGGFTEALCLQPLDVAKTRLQLDSTGKYRGLFHTVRTIASEEGVRALYKGLTVFQVHLISKYALRFGSFQYFKSLMGAGNSKGGDGLRNLGAGLMAGVTEAILIV 324
            AGMAGG  EA  LQPLDV KTRLQLD TG Y+G+FH  +TI   EG  ALYKGL+ F VHL  KYALRFGSF +FK ++G           N  AGL+ G  E++LIV
Sbjct:   36 AGMAGGVVEACVLQPLDVTKTRLQLDRTGMYKGMFHCGKTIYQTEGAGALYKGLSPFVVHLTLKYALRFGSFAWFKEILGTKQGSKASNQVNFIAGLLTGCLESVLIV 143
[Close]
BLAST of mRNA_M-pyrifera_M_contig106186.1341.1 vs. uniprot
Match: A0A2J8A232_9CHLO (Succinate/fumarate mitochondrial transporter n=1 Tax=Tetrabaena socialis TaxID=47790 RepID=A0A2J8A232_9CHLO)

HSP 1 Score: 117 bits (293), Expect = 9.080e-30
Identity = 64/108 (59.26%), Postives = 73/108 (67.59%), Query Frame = 1 
Query:    1 AGMAGGFTEALCLQPLDVAKTRLQLDSTGKYRGLFHTVRTIASEEGVRALYKGLTVFQVHLISKYALRFGSFQYFKSLMGAGNSKGGDGLRNLGAGLMAGVTEAILIV 324
            AG  GG  EA CLQP+DV KTRLQLD  GKY G+ H  RTIASEEGV+AL+KGLT F  HL  KYALR GS   +   +     K  DG R L AG MAG+TEA++IV
Sbjct:   23 AGSIGGVAEACCLQPMDVIKTRLQLDKAGKYHGIVHCGRTIASEEGVKALWKGLTPFATHLTLKYALRMGSNSIYSGALRDSEGKLTDGRRML-AGFMAGITEALIIV 129
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BLAST of mRNA_M-pyrifera_M_contig106186.1341.1 vs. uniprot
Match: A0A485L8L5_9STRA (Aste57867_16413 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L8L5_9STRA)

HSP 1 Score: 116 bits (290), Expect = 3.090e-29
Identity = 62/108 (57.41%), Postives = 72/108 (66.67%), Query Frame = 1 
Query:    1 AGMAGGFTEALCLQPLDVAKTRLQLDSTGKYRGLFHTVRTIASEEGVRALYKGLTVFQVHLISKYALRFGSFQYFKSLMGAGNSKGGDGLRNLGAGLMAGVTEAILIV 324
            AGMAGG  EA  LQPLDV KTRLQLD TG Y+G++H  +TI   EG  ALYKGLT F +HL  KYALRFGSF +FK  +GA          N  AGL+ G  E++LIV
Sbjct:   47 AGMAGGVVEACVLQPLDVTKTRLQLDRTGMYKGMWHCGKTIYETEGGLALYKGLTPFVMHLTLKYALRFGSFAWFKEKLGAAEGTKASNQVNFTAGLLTGCLESVLIV 154
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig106186.1341.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S0PCT1_CAFRO6.920e-3862.96Hypothetical protein (Fragment) n=1 Tax=Cafeteria ... [more]
A0A812Q505_9DINO1.750e-3666.97SFC1 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=23... [more]
A0A5A8DJ84_CAFRO6.720e-3662.04Uncharacterized protein n=3 Tax=Cafeteria roenberg... [more]
A0A7S3PR75_9STRA5.850e-3259.26Hypothetical protein n=1 Tax=Aplanochytrium stocch... [more]
A0A2V0PL62_9CHLO8.220e-3157.41Mitochondrial succinate-fumarate transporter n=1 T... [more]
A0A6G0XJP4_9STRA1.690e-3060.55Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A0D2NJI4_9CHLO2.850e-3060.58Succinate/fumarate transporter n=1 Tax=Monoraphidi... [more]
A0A024T7P3_9STRA6.460e-3057.41Uncharacterized protein n=6 Tax=Aphanomyces TaxID=... [more]
A0A2J8A232_9CHLO9.080e-3059.26Succinate/fumarate mitochondrial transporter n=1 T... [more]
A0A485L8L5_9STRA3.090e-2957.41Aste57867_16413 protein n=1 Tax=Aphanomyces stella... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig106186contigM-pyrifera_M_contig106186:222..630 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score114.4
Seed ortholog evalue3.3e-23
Seed eggNOG ortholog157072.XP_008881384.1
Preferred nameSFC1
KEGG koko:K07964,ko:K15100
KEGG TC2.A.29.7
KEGG ReactionR07811
KEGG Pathwayko00531,ko01100,ko05205,map00531,map01100,map05205
KEGG ModuleM00078
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005215,GO:0005310,GO:0005342,GO:0005469,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0006810,GO:0006811,GO:0006820,GO:0006835,GO:0006839,GO:0006855,GO:0008150,GO:0008509,GO:0008514,GO:0015075,GO:0015138,GO:0015141,GO:0015238,GO:0015291,GO:0015297,GO:0015318,GO:0015556,GO:0015711,GO:0015740,GO:0015741,GO:0015744,GO:0015849,GO:0015893,GO:0016020,GO:0016021,GO:0019866,GO:0022804,GO:0022857,GO:0031090,GO:0031224,GO:0031966,GO:0031967,GO:0031975,GO:0034220,GO:0042221,GO:0042493,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046942,GO:0046943,GO:0050896,GO:0051179,GO:0051234,GO:0055085,GO:0071422,GO:0071702,GO:0098656,GO:1903825,GO:1905039
EggNOG free text desc.mitochondrial tricarboxylic acid transmembrane transport
EggNOG OGsKOG0756@1,KOG0756@2759
EC3.2.1.166
COG Functional cat.U
CAZyGH79
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko00536,ko01000,ko02000
Exons2
Model size324
Cds size318
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig106186.1341.1prot_M-pyrifera_M_contig106186.1341.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig106186 228..630 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815571.9325538-UTR-M-pyrifera_M_contig106186:221..2271622815571.9325538-UTR-M-pyrifera_M_contig106186:221..227Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig106186 222..227 +
1692277469.1985376-UTR-M-pyrifera_M_contig106186:221..2271692277469.1985376-UTR-M-pyrifera_M_contig106186:221..227Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig106186 222..227 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815571.942506-CDS-M-pyrifera_M_contig106186:227..2621622815571.942506-CDS-M-pyrifera_M_contig106186:227..262Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig106186 228..262 +
1692277469.2087076-CDS-M-pyrifera_M_contig106186:227..2621692277469.2087076-CDS-M-pyrifera_M_contig106186:227..262Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig106186 228..262 +
1622815571.9528608-CDS-M-pyrifera_M_contig106186:347..6301622815571.9528608-CDS-M-pyrifera_M_contig106186:347..630Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig106186 348..630 +
1692277469.2180412-CDS-M-pyrifera_M_contig106186:347..6301692277469.2180412-CDS-M-pyrifera_M_contig106186:347..630Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig106186 348..630 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig106186.1341.1

>prot_M-pyrifera_M_contig106186.1341.1 ID=prot_M-pyrifera_M_contig106186.1341.1|Name=mRNA_M-pyrifera_M_contig106186.1341.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=106bp
MAGGFTEALCLQPLDVAKTRLQLDSTGKYRGLFHTVRTIASEEGVRALYK
GLTVFQVHLISKYALRFGSFQYFKSLMGAGNSKGGDGLRNLGAGLMAGVT
EAILIV
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mRNA from alignment at M-pyrifera_M_contig106186:222..630+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig106186.1341.1 ID=mRNA_M-pyrifera_M_contig106186.1341.1|Name=mRNA_M-pyrifera_M_contig106186.1341.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=409bp|location=Sequence derived from alignment at M-pyrifera_M_contig106186:222..630+ (Macrocystis pyrifera P11B4 male)
GCTGGGATGGCCGGAGGATTCACCGAGGCGCTTTGTCTCCAGTACGGTGC
AAGTCCACGTTTCCCCGTCGTTCCCCATGTCCCGCACACCCTCCCCCCGC
CCCCACCCGGCTGTTTTCGTTTGCAGGCCTCTGGATGTGGCGAAGACCCG
TTTGCAGTTGGACTCCACGGGGAAGTATCGCGGCTTGTTTCACACGGTGC
GCACGATCGCGTCCGAGGAAGGGGTGCGCGCGCTATACAAGGGCCTGACC
GTGTTCCAGGTGCACCTGATTTCCAAGTACGCGCTCCGATTCGGCAGTTT
CCAGTACTTCAAGTCCTTGATGGGCGCTGGGAATTCCAAGGGAGGCGACG
GGCTTCGCAACTTGGGTGCTGGGTTGATGGCTGGTGTGACGGAGGCGATT
TTGATCGTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig106186:222..630+

>mRNA_M-pyrifera_M_contig106186.1341.1 ID=mRNA_M-pyrifera_M_contig106186.1341.1|Name=mRNA_M-pyrifera_M_contig106186.1341.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=636bp|location=Sequence derived from alignment at M-pyrifera_M_contig106186:222..630+ (Macrocystis pyrifera P11B4 male)
ATGGCCGGAGGATTCACCGAGGCGCTTTGTCTCCAATGGCCGGAGGATTC
ACCGAGGCGCTTTGTCTCCAGCCTCTGGATGTGGCGAAGACCCGTTTGCA
GTTGGACTCCACGGGGAAGTATCGCGGCTTGTTTCACACGGTGCGCACGA
TCGCGTCCGAGGAAGGGGTGCGCGCGCTATACAAGGGCCTGACCGTGTTC
CAGGTGCACCTGATTTCCAAGTACGCGCTCCGATTCGGCAGTTTCCAGTA
CTTCAAGTCCTTGATGGGCGCTGGGAATTCCAAGGGAGGCGACGGGCTTC
GCAACTTGGGTGCTGGGTTGATGGCTGGTGTGACGGAGGCGATTTTGATC
GTGGCCTCTGGATGTGGCGAAGACCCGTTTGCAGTTGGACTCCACGGGGA
AGTATCGCGGCTTGTTTCACACGGTGCGCACGATCGCGTCCGAGGAAGGG
GTGCGCGCGCTATACAAGGGCCTGACCGTGTTCCAGGTGCACCTGATTTC
CAAGTACGCGCTCCGATTCGGCAGTTTCCAGTACTTCAAGTCCTTGATGG
GCGCTGGGAATTCCAAGGGAGGCGACGGGCTTCGCAACTTGGGTGCTGGG
TTGATGGCTGGTGTGACGGAGGCGATTTTGATCGTG
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