mRNA_M-pyrifera_M_contig106157.1336.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig106157.1336.1
Unique NamemRNA_M-pyrifera_M_contig106157.1336.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig106157.1336.1 vs. uniprot
Match: A0A8H7UJI2_MORIS (Uncharacterized protein n=2 Tax=Umbelopsis TaxID=64561 RepID=A0A8H7UJI2_MORIS)

HSP 1 Score: 59.7 bits (143), Expect = 4.540e-8
Identity = 40/117 (34.19%), Postives = 62/117 (52.99%), Query Frame = 1 
Query:    1 HGEPEAFMMLAFQDDDGVLGEKDSAKAIEFWRKAADLGHAVAIRVLACCHLNG---LNDTPIDAERALAMLRQAAAMGDRHANYQLGLLYQGS--TILPHDIRRALKYYKYSADRGY 336
            H  P+A    A   +DG+   KDSAKA++F+RKA+ L H  A+  L    LNG   ++  P D  + L    +AA +   HA ++L LL++     ++  D+  A+  Y  +AD GY
Sbjct:  193 HHHPDAAYRAAKCYEDGLGCRKDSAKAVQFYRKASTLNHPGAMYRLGVAELNGELGISKNPRDGVKWLKRAAEAATVEYPHALHELALLHERGIDNVVFTDLEYAVTLYAQAADLGY 309
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BLAST of mRNA_M-pyrifera_M_contig106157.1336.1 vs. uniprot
Match: I1CBX1_RHIO9 (Uncharacterized protein n=1 Tax=Rhizopus delemar (strain RA 99-880 / ATCC MYA-4621 / FGSC 9543 / NRRL 43880) TaxID=246409 RepID=I1CBX1_RHIO9)

HSP 1 Score: 53.5 bits (127), Expect = 6.470e-6
Identity = 36/116 (31.03%), Postives = 60/116 (51.72%), Query Frame = 1 
Query:    4 GEPEAFMMLAFQDDDGVLGEKDSAKAIEFWRKAADLGHAVAIRVLACCHLNGLNDTPIDAERALAMLRQAAAMGDR---HANYQLGLLYQ--GSTILPHDIRRALKYYKYSADRGY 336
            G P+     A   + GV  ++D   A++F+RKAA+LG  +A+  L    L G  + PI+    ++ L++AA   D    HA ++LGL Y+  G   +  D   A + +  +A+ GY
Sbjct:  148 GHPQCTFRAAVCYEVGVGTKRDKNHAMQFYRKAANLGDPMAMYKLGVILLKGFLNQPINHREGISWLKRAAEQADEIYPHALHELGLAYEKDGIPCIIPDANYARELFTQAAEYGY 263
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BLAST of mRNA_M-pyrifera_M_contig106157.1336.1 vs. uniprot
Match: UPI000225BFC5 (SEL1-like repeat protein n=1 Tax=Candidatus Odyssella thessalonicensis TaxID=84647 RepID=UPI000225BFC5)

HSP 1 Score: 50.8 bits (120), Expect = 6.050e-5
Identity = 33/94 (35.11%), Postives = 49/94 (52.13%), Query Frame = 1 
Query:   52 VLGEKDSAKAIEFWRKAADLGHAVAIRVLACCHLNGLNDTPIDAERALAMLRQAAAMGDRHANYQLGLLYQGSTILPHDIRRALKYYKYSADRG 333
             +G +D   A+ +++KAAD GHA A   LA  H +G+ D   + E +L +L QAA  G   A   LG L   + ++P DI +  K    +A  G
Sbjct:  454 AIGSQDPTIALNWYKKAADKGHARAQLSLAIRHFDGM-DVEKNIEESLRLLNQAAEAGLPEAQRHLGELCLIAKVIPLDIFKGFKLLTLAAKGG 546
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BLAST of mRNA_M-pyrifera_M_contig106157.1336.1 vs. uniprot
Match: UPI0015692312 (SEL1-like repeat protein n=2 Tax=Ensifer sesbaniae TaxID=1214071 RepID=UPI0015692312)

HSP 1 Score: 50.4 bits (119), Expect = 8.360e-5
Identity = 38/114 (33.33%), Postives = 58/114 (50.88%), Query Frame = 1 
Query:    4 GEPEAFMMLA--FQDDDGVLGEKDSAKAIEFWRKAADLGHAVAIRVLACCHLNGLNDTPIDAERALAMLRQAAAMGDRHANYQLGLLYQ--GSTILPHDIRRALKYYKYSADRG 333
            G  EA + L   + D+D    ++D AKA+E++++AAD G   A   +    + G   T  D    L+++ + AA GD  A   LG  Y    +T LP D+ RA  YY+ +A  G
Sbjct:   45 GNAEALLRLGDLYSDEDNA--DRDPAKALEYYQRAADAGSLAAKLRVGEMRILG-QGTQSDVTGGLSLIEEVAAGGDGTALALLGGFYSHANATALPIDLPRAYAYYRRAAAAG 155
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig106157.1336.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A8H7UJI2_MORIS4.540e-834.19Uncharacterized protein n=2 Tax=Umbelopsis TaxID=6... [more]
I1CBX1_RHIO96.470e-631.03Uncharacterized protein n=1 Tax=Rhizopus delemar (... [more]
UPI000225BFC56.050e-535.11SEL1-like repeat protein n=1 Tax=Candidatus Odysse... [more]
UPI00156923128.360e-533.33SEL1-like repeat protein n=2 Tax=Ensifer sesbaniae... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig106157contigM-pyrifera_M_contig106157:27..365 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size339
Cds size318
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815571.6666946-UTR-M-pyrifera_M_contig106157:26..471622815571.6666946-UTR-M-pyrifera_M_contig106157:26..47Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig106157 27..47 +
1692277469.0835488-UTR-M-pyrifera_M_contig106157:26..471692277469.0835488-UTR-M-pyrifera_M_contig106157:26..47Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig106157 27..47 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815571.6850824-CDS-M-pyrifera_M_contig106157:47..3651622815571.6850824-CDS-M-pyrifera_M_contig106157:47..365Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig106157 48..365 +
1692277469.0919316-CDS-M-pyrifera_M_contig106157:47..3651692277469.0919316-CDS-M-pyrifera_M_contig106157:47..365Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig106157 48..365 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig106157.1336.1prot_M-pyrifera_M_contig106157.1336.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig106157 48..365 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig106157.1336.1

>prot_M-pyrifera_M_contig106157.1336.1 ID=prot_M-pyrifera_M_contig106157.1336.1|Name=mRNA_M-pyrifera_M_contig106157.1336.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=106bp
MMLAFQDDDGVLGEKDSAKAIEFWRKAADLGHAVAIRVLACCHLNGLNDT
PIDAERALAMLRQAAAMGDRHANYQLGLLYQGSTILPHDIRRALKYYKYS
ADRGYR
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mRNA from alignment at M-pyrifera_M_contig106157:27..365+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig106157.1336.1 ID=mRNA_M-pyrifera_M_contig106157.1336.1|Name=mRNA_M-pyrifera_M_contig106157.1336.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=339bp|location=Sequence derived from alignment at M-pyrifera_M_contig106157:27..365+ (Macrocystis pyrifera P11B4 male)
CACGGAGAACCCGAGGCATTCATGATGCTTGCATTTCAGGATGACGATGG
CGTCCTAGGGGAGAAGGACTCGGCAAAGGCGATCGAGTTTTGGCGAAAGG
CAGCAGACCTTGGCCACGCCGTCGCCATTCGCGTGCTGGCCTGTTGCCAC
CTCAATGGCCTCAACGACACACCAATAGATGCTGAAAGAGCACTAGCAAT
GCTGCGGCAGGCTGCGGCAATGGGAGACAGGCATGCCAACTACCAGCTGG
GCCTTCTCTACCAAGGCAGCACCATTCTTCCTCACGACATCCGGCGAGCC
CTCAAGTACTATAAGTACTCGGCAGATCGTGGGTACAGG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig106157:27..365+

>mRNA_M-pyrifera_M_contig106157.1336.1 ID=mRNA_M-pyrifera_M_contig106157.1336.1|Name=mRNA_M-pyrifera_M_contig106157.1336.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=636bp|location=Sequence derived from alignment at M-pyrifera_M_contig106157:27..365+ (Macrocystis pyrifera P11B4 male)
ATGATGCTTGCATTTCAGGATGACGATGGCGTCCTAGGGGAGAAGGACTC
GGCAAAGGCGATCGAGTTTTGGCGAAAGGCAGCAGACCTTGGCCACGCCG
TCGCCATTCGCGTGCTGGCCTGTTGCCACCTCAATGGCCTCAACGACACA
CCAATAGATGCTGAAAGAGCACTAGCAATGCTGCGGCAGGCTGCGGCAAT
GGGAGACAGGCATGCCAACTACCAGCTGGGCCTTCTCTACCAAGGCAGCA
CCATTCTTCCTCACGACATCCGGCGAGCCCTCAAGTACTATAAGTACTCG
GCAGATCGTGGGTACAGGATGATGCTTGCATTTCAGGATGACGATGGCGT
CCTAGGGGAGAAGGACTCGGCAAAGGCGATCGAGTTTTGGCGAAAGGCAG
CAGACCTTGGCCACGCCGTCGCCATTCGCGTGCTGGCCTGTTGCCACCTC
AATGGCCTCAACGACACACCAATAGATGCTGAAAGAGCACTAGCAATGCT
GCGGCAGGCTGCGGCAATGGGAGACAGGCATGCCAACTACCAGCTGGGCC
TTCTCTACCAAGGCAGCACCATTCTTCCTCACGACATCCGGCGAGCCCTC
AAGTACTATAAGTACTCGGCAGATCGTGGGTACAGG
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