mRNA_M-pyrifera_M_contig106148.1334.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig106148.1334.1
Unique NamemRNA_M-pyrifera_M_contig106148.1334.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig106148.1334.1 vs. uniprot
Match: A0A6B2L9E9_9EUKA (Uncharacterized protein n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2L9E9_9EUKA)

HSP 1 Score: 104 bits (259), Expect = 3.720e-25
Identity = 46/72 (63.89%), Postives = 55/72 (76.39%), Query Frame = 1
Query:    1 VVYSAYVLHRSPKFWGDDAEEFRPERWEEEGLIKHPYQYVPFQKGPRICLGMDMAYLEASLVLVRILCSGYR 216
            V+YS Y LHR  ++WG+DAEEF+PERWE+E L KHPYQYVPFQKGPRICLGM MA  EA   +  I   G++
Sbjct:  236 VMYSPYTLHRLKEYWGEDAEEFKPERWEKEDLFKHPYQYVPFQKGPRICLGMKMAIEEAKTCISIIYQHGFK 307          
BLAST of mRNA_M-pyrifera_M_contig106148.1334.1 vs. uniprot
Match: A0A6B2L626_9EUKA (Uncharacterized protein n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2L626_9EUKA)

HSP 1 Score: 104 bits (259), Expect = 6.950e-25
Identity = 43/75 (57.33%), Postives = 60/75 (80.00%), Query Frame = 1
Query:    1 VVYSAYVLHRSPKFWGDDAEEFRPERWEEEGLIKHPYQYVPFQKGPRICLGMDMAYLEASLVLVRILCSGYRLRI 225
            V YS +V+HR  +FWG+DA+EF+PERWE++ ++KHPYQ+VPFQKGPR CLGM+MAY EA   +  +  SG+R ++
Sbjct:  287 VSYSPFVVHRLKEFWGEDADEFKPERWEDKDILKHPYQFVPFQKGPRQCLGMNMAYEEAKCCIAILYQSGFRFKL 361          
BLAST of mRNA_M-pyrifera_M_contig106148.1334.1 vs. uniprot
Match: A0A6B2L8Q9_9EUKA (Uncharacterized protein n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2L8Q9_9EUKA)

HSP 1 Score: 103 bits (257), Expect = 8.480e-25
Identity = 43/75 (57.33%), Postives = 59/75 (78.67%), Query Frame = 1
Query:    1 VVYSAYVLHRSPKFWGDDAEEFRPERWEEEGLIKHPYQYVPFQKGPRICLGMDMAYLEASLVLVRILCSGYRLRI 225
            V+YS Y LHR  ++WG+DA+ FRPERWE++ ++KHPYQ+VPFQKGPR CLGM+MAY EA   +  +  SG+R ++
Sbjct:  236 VMYSPYTLHRLKEYWGEDADVFRPERWEDKEILKHPYQFVPFQKGPRQCLGMNMAYEEAKCCIAILYQSGFRFKL 310          
BLAST of mRNA_M-pyrifera_M_contig106148.1334.1 vs. uniprot
Match: A0A6B2LJ31_9EUKA (Uncharacterized protein n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2LJ31_9EUKA)

HSP 1 Score: 99.8 bits (247), Expect = 1.370e-24
Identity = 41/75 (54.67%), Postives = 59/75 (78.67%), Query Frame = 1
Query:    1 VVYSAYVLHRSPKFWGDDAEEFRPERWEEEGLIKHPYQYVPFQKGPRICLGMDMAYLEASLVLVRILCSGYRLRI 225
            V YS +V+HR  ++WG+DA+ FRPERWE++ ++KHPYQ+VPFQKGPR CLGM+MAY EA   +  +  +G+R ++
Sbjct:   93 VGYSPFVVHRLKEYWGEDADVFRPERWEDKEILKHPYQFVPFQKGPRQCLGMNMAYEEAKCCIAILYQNGFRFKL 167          
BLAST of mRNA_M-pyrifera_M_contig106148.1334.1 vs. uniprot
Match: A0A6B2L2V8_9EUKA (Uncharacterized protein n=4 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2L2V8_9EUKA)

HSP 1 Score: 103 bits (258), Expect = 1.980e-24
Identity = 43/75 (57.33%), Postives = 60/75 (80.00%), Query Frame = 1
Query:    1 VVYSAYVLHRSPKFWGDDAEEFRPERWEEEGLIKHPYQYVPFQKGPRICLGMDMAYLEASLVLVRILCSGYRLRI 225
            V YS +V+HR  +FWG+DA+EF+PERWE++ ++KHPYQ+VPFQKGPR CLGM+MAY EA   +  +  SG+R ++
Sbjct:  373 VGYSPFVVHRLKEFWGEDADEFKPERWEDKDILKHPYQFVPFQKGPRQCLGMNMAYEEAKCCIAILYQSGFRFKL 447          
BLAST of mRNA_M-pyrifera_M_contig106148.1334.1 vs. uniprot
Match: A0A6B2LEH0_9EUKA (Uncharacterized protein n=2 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2LEH0_9EUKA)

HSP 1 Score: 100 bits (250), Expect = 2.090e-24
Identity = 42/75 (56.00%), Postives = 59/75 (78.67%), Query Frame = 1
Query:    1 VVYSAYVLHRSPKFWGDDAEEFRPERWEEEGLIKHPYQYVPFQKGPRICLGMDMAYLEASLVLVRILCSGYRLRI 225
            V YS +V+HR  ++WG+DA+ FRPERWE++ ++KHPYQ+VPFQKGPR CLGM+MAY EA   +  +  SG+R ++
Sbjct:  147 VGYSPFVVHRLKEYWGEDADVFRPERWEDKEILKHPYQFVPFQKGPRQCLGMNMAYEEAKCCIAILYQSGFRFKL 221          
BLAST of mRNA_M-pyrifera_M_contig106148.1334.1 vs. uniprot
Match: A0A6B2LEY4_9EUKA (Uncharacterized protein n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2LEY4_9EUKA)

HSP 1 Score: 100 bits (248), Expect = 3.210e-24
Identity = 40/75 (53.33%), Postives = 59/75 (78.67%), Query Frame = 1
Query:    1 VVYSAYVLHRSPKFWGDDAEEFRPERWEEEGLIKHPYQYVPFQKGPRICLGMDMAYLEASLVLVRILCSGYRLRI 225
            + YS +V+HR  ++WG+DA+ F+PERWE++ ++KHPYQ+VPFQKGPR CLGM+MAY EA   +  +  SG+R ++
Sbjct:  147 ISYSPFVVHRLKEYWGEDADVFKPERWEDKDILKHPYQFVPFQKGPRQCLGMNMAYEEAKCCIAILYQSGFRFKL 221          
BLAST of mRNA_M-pyrifera_M_contig106148.1334.1 vs. uniprot
Match: A0A6B2L3D7_9EUKA (Uncharacterized protein n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2L3D7_9EUKA)

HSP 1 Score: 102 bits (254), Expect = 6.930e-24
Identity = 41/60 (68.33%), Postives = 52/60 (86.67%), Query Frame = 1
Query:    1 VVYSAYVLHRSPKFWGDDAEEFRPERWEEEGLIKHPYQYVPFQKGPRICLGMDMAYLEAS 180
            ++YS Y +HR  ++WGDDAEEF+PERWE++ ++KHPYQYVPFQKGPRICLGM+MA  EA 
Sbjct:  367 IMYSPYWIHRLKEYWGDDAEEFKPERWEQKDILKHPYQYVPFQKGPRICLGMNMAQEEAK 426          
BLAST of mRNA_M-pyrifera_M_contig106148.1334.1 vs. uniprot
Match: A0A6B2LF84_9EUKA (Uncharacterized protein (Fragment) n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2LF84_9EUKA)

HSP 1 Score: 95.9 bits (237), Expect = 1.110e-22
Identity = 41/59 (69.49%), Postives = 48/59 (81.36%), Query Frame = 1
Query:    1 VVYSAYVLHRSPKFWGDDAEEFRPERWEEEGLIKHPYQYVPFQKGPRICLGMDMAYLEA 177
            V YS +V+HR   +WG+DAEEF PERWE   L+KHPYQ+VPFQKGPR CLGM+MAY EA
Sbjct:  181 VGYSPFVVHRLKAYWGEDAEEFHPERWENGELLKHPYQFVPFQKGPRQCLGMNMAYEEA 239          
BLAST of mRNA_M-pyrifera_M_contig106148.1334.1 vs. uniprot
Match: A0A6B2L774_9EUKA (Uncharacterized protein n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2L774_9EUKA)

HSP 1 Score: 97.1 bits (240), Expect = 2.090e-22
Identity = 39/72 (54.17%), Postives = 56/72 (77.78%), Query Frame = 1
Query:    1 VVYSAYVLHRSPKFWGDDAEEFRPERWEEEGLIKHPYQYVPFQKGPRICLGMDMAYLEASLVLVRILCSGYR 216
            V+Y+ Y++HR  ++WG+DAE+FRPERW++  ++KH YQY+PFQKGPRICLGM+MA  EA   +  +   G+R
Sbjct:  236 VMYTPYIVHRLKEYWGNDAEQFRPERWDDPNVLKHNYQYIPFQKGPRICLGMNMAQEEAKCCISILYQHGFR 307          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig106148.1334.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6B2L9E9_9EUKA3.720e-2563.89Uncharacterized protein n=1 Tax=Arcella intermedia... [more]
A0A6B2L626_9EUKA6.950e-2557.33Uncharacterized protein n=1 Tax=Arcella intermedia... [more]
A0A6B2L8Q9_9EUKA8.480e-2557.33Uncharacterized protein n=1 Tax=Arcella intermedia... [more]
A0A6B2LJ31_9EUKA1.370e-2454.67Uncharacterized protein n=1 Tax=Arcella intermedia... [more]
A0A6B2L2V8_9EUKA1.980e-2457.33Uncharacterized protein n=4 Tax=Arcella intermedia... [more]
A0A6B2LEH0_9EUKA2.090e-2456.00Uncharacterized protein n=2 Tax=Arcella intermedia... [more]
A0A6B2LEY4_9EUKA3.210e-2453.33Uncharacterized protein n=1 Tax=Arcella intermedia... [more]
A0A6B2L3D7_9EUKA6.930e-2468.33Uncharacterized protein n=1 Tax=Arcella intermedia... [more]
A0A6B2LF84_9EUKA1.110e-2269.49Uncharacterized protein (Fragment) n=1 Tax=Arcella... [more]
A0A6B2L774_9EUKA2.090e-2254.17Uncharacterized protein n=1 Tax=Arcella intermedia... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig106148contigM-pyrifera_M_contig106148:17..241 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score87.8
Seed ortholog evalue2.3e-15
Seed eggNOG ortholog984962.XP_009541868.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.cytochrome P450
EggNOG OGs226NV@155619,3AI61@33154,3H27M@355688,3PC1P@4751,3V37V@5204,COG2124@1,KOG0157@2759
COG Functional cat.Q
Best tax levelAgaricomycetes incertae sedis
Best eggNOG OGNA|NA|NA
Exons1
Model size225
Cds size225
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815571.5561905-CDS-M-pyrifera_M_contig106148:16..2411622815571.5561905-CDS-M-pyrifera_M_contig106148:16..241Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig106148 17..241 +
1692277469.0375504-CDS-M-pyrifera_M_contig106148:16..2411692277469.0375504-CDS-M-pyrifera_M_contig106148:16..241Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig106148 17..241 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig106148.1334.1prot_M-pyrifera_M_contig106148.1334.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig106148 17..241 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig106148.1334.1

>prot_M-pyrifera_M_contig106148.1334.1 ID=prot_M-pyrifera_M_contig106148.1334.1|Name=mRNA_M-pyrifera_M_contig106148.1334.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=75bp
VVYSAYVLHRSPKFWGDDAEEFRPERWEEEGLIKHPYQYVPFQKGPRICL
GMDMAYLEASLVLVRILCSGYRLRI
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mRNA from alignment at M-pyrifera_M_contig106148:17..241+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig106148.1334.1 ID=mRNA_M-pyrifera_M_contig106148.1334.1|Name=mRNA_M-pyrifera_M_contig106148.1334.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=225bp|location=Sequence derived from alignment at M-pyrifera_M_contig106148:17..241+ (Macrocystis pyrifera P11B4 male)
GTTGTGTATAGTGCCTACGTCCTCCACCGCTCGCCCAAGTTCTGGGGAGA CGACGCCGAGGAGTTCCGTCCAGAGCGCTGGGAGGAGGAGGGCCTCATCA AGCACCCCTACCAGTACGTGCCCTTCCAGAAGGGCCCGCGCATCTGCCTC GGCATGGACATGGCCTACTTGGAGGCCTCGCTCGTCCTCGTTCGCATCCT CTGCTCTGGCTATCGCCTCAGAATC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig106148:17..241+

>mRNA_M-pyrifera_M_contig106148.1334.1 ID=mRNA_M-pyrifera_M_contig106148.1334.1|Name=mRNA_M-pyrifera_M_contig106148.1334.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=450bp|location=Sequence derived from alignment at M-pyrifera_M_contig106148:17..241+ (Macrocystis pyrifera P11B4 male)
GTTGTGTATAGTGCCTACGTCCTCCACCGCTCGCCCAAGTTCTGGGGAGA
CGACGCCGAGGAGTTCCGTCCAGAGCGCTGGGAGGAGGAGGGCCTCATCA
AGCACCCCTACCAGTACGTGCCCTTCCAGAAGGGCCCGCGCATCTGCCTC
GGCATGGACATGGCCTACTTGGAGGCCTCGCTCGTCCTCGTTCGCATCCT
CTGCTCTGGCTATCGCCTCAGAATCGTTGTGTATAGTGCCTACGTCCTCC
ACCGCTCGCCCAAGTTCTGGGGAGACGACGCCGAGGAGTTCCGTCCAGAG
CGCTGGGAGGAGGAGGGCCTCATCAAGCACCCCTACCAGTACGTGCCCTT
CCAGAAGGGCCCGCGCATCTGCCTCGGCATGGACATGGCCTACTTGGAGG
CCTCGCTCGTCCTCGTTCGCATCCTCTGCTCTGGCTATCGCCTCAGAATC
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