mRNA_M-pyrifera_M_contig106134.1328.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig106134.1328.1
Unique NamemRNA_M-pyrifera_M_contig106134.1328.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig106134.1328.1 vs. uniprot
Match: Q54UD1_DICDI (Uncharacterized protein n=1 Tax=Dictyostelium discoideum TaxID=44689 RepID=Q54UD1_DICDI)

HSP 1 Score: 67.4 bits (163), Expect = 2.660e-11
Identity = 29/72 (40.28%), Postives = 49/72 (68.06%), Query Frame = 1
Query:   10 QTESLEKLAGLRVGLDANAWLRQLSLSEPRQAAMGGLPLTLEETVAANVAKWRQAGTVPTFVFNGIGIKRER 225
            +T +++ L+  R+G++A  WL +L + EP Q  MGGLPLTL +T+   + K+++A   P F+FNG+ + +ER
Sbjct:   15 KTSNIDVLSDYRIGIEAKPWLLKLPVQEPFQITMGGLPLTLVDTLEKELNKFKKANIKPFFLFNGLSVLKER 86          
BLAST of mRNA_M-pyrifera_M_contig106134.1328.1 vs. uniprot
Match: F0ZFY0_DICPU (Uncharacterized protein n=1 Tax=Dictyostelium purpureum TaxID=5786 RepID=F0ZFY0_DICPU)

HSP 1 Score: 67.0 bits (162), Expect = 3.630e-11
Identity = 31/72 (43.06%), Postives = 48/72 (66.67%), Query Frame = 1
Query:   10 QTESLEKLAGLRVGLDANAWLRQLSLSEPRQAAMGGLPLTLEETVAANVAKWRQAGTVPTFVFNGIGIKRER 225
            +T ++E L   R+G++A  WL +L + EP Q  MGGLPLTL +T+   + K+++A   P F+FNG+ I +ER
Sbjct:   16 KTSNIELLNDYRIGIEAMPWLLKLPVQEPFQITMGGLPLTLADTLQKELDKFKKANIKPFFLFNGLSIIKER 87          
BLAST of mRNA_M-pyrifera_M_contig106134.1328.1 vs. uniprot
Match: A0A7D8YV28_9TREE (Uncharacterized protein n=1 Tax=Vanrija humicola TaxID=5417 RepID=A0A7D8YV28_9TREE)

HSP 1 Score: 56.2 bits (134), Expect = 2.230e-7
Identity = 31/81 (38.27%), Postives = 47/81 (58.02%), Query Frame = 1
Query:    1 QLIQTESLEKLAGLRVGLDANAWLRQL----SLSEPRQAAMGGLPLTLEETVAANVAKWRQAGTVPTFVFNGIGIKRERAP 231
            +LIQT  L  LAG R+G+D N ++R L       EP  A+ GGLPL+L   + +++ +  +AG  P FVF+G+ +     P
Sbjct:   13 KLIQTAPLSALAGTRLGIDVNYYVRTLLQDPDQREPLIASTGGLPLSLANRIESDLRQLDKAGIKPVFVFSGLPLASRPLP 93          
BLAST of mRNA_M-pyrifera_M_contig106134.1328.1 vs. uniprot
Match: A0A8J4PMB3_9MYCE (Uncharacterized protein n=1 Tax=Polysphondylium violaceum TaxID=133409 RepID=A0A8J4PMB3_9MYCE)

HSP 1 Score: 55.1 bits (131), Expect = 5.830e-7
Identity = 26/59 (44.07%), Postives = 39/59 (66.10%), Query Frame = 1
Query:   49 GLDANAWLRQLSLSEPRQAAMGGLPLTLEETVAANVAKWRQAGTVPTFVFNGIGIKRER 225
            G++A  WL +L + EP Q  MGGLPLTL +T+   + K+++A   P F+FNG+   RE+
Sbjct:    9 GIEAVPWLFKLPVKEPFQVTMGGLPLTLVDTLQNELNKFKKANIKPFFLFNGLHNLREK 67          
BLAST of mRNA_M-pyrifera_M_contig106134.1328.1 vs. uniprot
Match: A0A5E8B9H9_9ASCO (Uncharacterized protein n=1 Tax=Saprochaete ingens TaxID=2606893 RepID=A0A5E8B9H9_9ASCO)

HSP 1 Score: 55.1 bits (131), Expect = 5.890e-7
Identity = 29/81 (35.80%), Postives = 53/81 (65.43%), Query Frame = 1
Query:    1 QLIQTESLEKLAGLRVGLDANAWLRQL--SLSEPRQAAMGGLPLTLEETVAANVAKWRQAGTVPTFVFNGIGIKRERAPLT 237
            ++++T +L  L G ++G+ AN ++  +  S SEP   A+GG+P +L + VAA++A ++  G  P FVF+G+ +  +R P+T
Sbjct:   14 RIVRTLNLSTLKGSKIGIYANNYIDSIVRSNSEPLVQALGGVPFSLLDHVAADLAAFQANGITPLFVFDGLSVNSQR-PVT 93          
BLAST of mRNA_M-pyrifera_M_contig106134.1328.1 vs. uniprot
Match: A0A1Y2EU08_9BASI (Temperature dependent protein affecting M2 dsRNA replication-domain-containing protein n=1 Tax=Leucosporidium creatinivorum TaxID=106004 RepID=A0A1Y2EU08_9BASI)

HSP 1 Score: 54.7 bits (130), Expect = 8.000e-7
Identity = 31/82 (37.80%), Postives = 46/82 (56.10%), Query Frame = 1
Query:    4 LIQTESLEKLAGLRVGLDANAWLRQL------SLSEPRQAAMGGLPLTLEETVAANVAKWRQAGTVPTFVFNGIGIKRERAP 231
            L++   L  LAG R+G+DAN +LR+L      + S+   AA+GG PLTL   +  ++    +AG  P FVF+GI  +    P
Sbjct:   15 LVKEVPLSALAGTRLGIDANHYLRRLLTPRDPTTSDAFLAAVGGAPLTLTAEIEKDLKTLEKAGVKPVFVFSGINPQERERP 96          
BLAST of mRNA_M-pyrifera_M_contig106134.1328.1 vs. uniprot
Match: A0A0L0SZB6_ALLM3 (Uncharacterized protein n=1 Tax=Allomyces macrogynus (strain ATCC 38327) TaxID=578462 RepID=A0A0L0SZB6_ALLM3)

HSP 1 Score: 53.5 bits (127), Expect = 2.050e-6
Identity = 32/78 (41.03%), Postives = 44/78 (56.41%), Query Frame = 1
Query:    4 LIQTESLEKLAGLRVGLDANAWLRQLSLSEPRQAAMGGL----PLTLEETVAANVAKWRQAGTVPTFVFNGIGIKRER 225
            LIQTES   LAG R+G+DAN WLR+L +   R  A+ GL    P  L   +   +  +R     P FVF G+ ++R+R
Sbjct:   15 LIQTESATSLAGTRLGIDANTWLRKL-IQTLRDNALTGLGATIPFHLGPMIDTELQWFRTHRIQPVFVFPGLNLRRDR 91          
BLAST of mRNA_M-pyrifera_M_contig106134.1328.1 vs. uniprot
Match: A0A7S2BM54_9DINO (Hypothetical protein n=1 Tax=Alexandrium andersonii TaxID=327968 RepID=A0A7S2BM54_9DINO)

HSP 1 Score: 50.4 bits (119), Expect = 2.500e-5
Identity = 26/69 (37.68%), Postives = 41/69 (59.42%), Query Frame = 1
Query:    4 LIQTESLEKLAGLRVGLDANAWLRQL-SLSEPRQAAMGGLPLTLEETVAANVAKWRQAGTVPTFVFNGI 207
            L+ T  LE+L G+RVG+DA  WLR + +L +P   A+GG+P  +   V   +  +++    P FVF G+
Sbjct:   15 LVHTGKLERLKGVRVGVDAVFWLRSIQALKDPFADALGGIPPGIFGFVDKELESFKRYDITPLFVFQGV 83          
BLAST of mRNA_M-pyrifera_M_contig106134.1328.1 vs. uniprot
Match: A0A194SBH0_RHOGW (XPGN domain-containing protein n=2 Tax=Rhodotorula TaxID=5533 RepID=A0A194SBH0_RHOGW)

HSP 1 Score: 50.1 bits (118), Expect = 3.420e-5
Identity = 32/82 (39.02%), Postives = 44/82 (53.66%), Query Frame = 1
Query:    4 LIQTESLEKLAGLRVGLDANAWLRQLSLSEPRQ-------AAMGGLPLTLEETVAANVAKWRQAGTVPTFVFNGIG-IKRER 225
            L++   L  LAG R+G+DAN +LR+L  +            A+GG PLTL   + AN    +  G  P FVFNG+  + RER
Sbjct:   15 LVKECPLSALAGTRLGIDANHYLRKLLSAREGSDKHDSFTPAIGGAPLTLTAEIEANNHTLQALGIKPVFVFNGVNPLDRER 96          
BLAST of mRNA_M-pyrifera_M_contig106134.1328.1 vs. uniprot
Match: A0A0D6EFR3_SPOSA (SPOSA6832_00165-mRNA-1:cds (Fragment) n=1 Tax=Sporidiobolus salmonicolor TaxID=5005 RepID=A0A0D6EFR3_SPOSA)

HSP 1 Score: 50.1 bits (118), Expect = 3.420e-5
Identity = 30/81 (37.04%), Postives = 46/81 (56.79%), Query Frame = 1
Query:    4 LIQTESLEKLAGLRVGLDANAWLRQL------SLSEPRQAAMGGLPLTLEETVAANVAKWRQAGTVPTFVFNGIG-IKRER 225
            L++   L  L+G+R+G+DAN +LR+L      S S+    A+GG PLTL   +  N+    + G  P F F+GI  + R+R
Sbjct:   25 LVKECPLSALSGMRLGIDANHYLRKLLTARDPSTSDTFTPAVGGAPLTLTAEIEKNMQTLEKHGIKPVFTFDGINPLDRQR 105          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig106134.1328.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
Q54UD1_DICDI2.660e-1140.28Uncharacterized protein n=1 Tax=Dictyostelium disc... [more]
F0ZFY0_DICPU3.630e-1143.06Uncharacterized protein n=1 Tax=Dictyostelium purp... [more]
A0A7D8YV28_9TREE2.230e-738.27Uncharacterized protein n=1 Tax=Vanrija humicola T... [more]
A0A8J4PMB3_9MYCE5.830e-744.07Uncharacterized protein n=1 Tax=Polysphondylium vi... [more]
A0A5E8B9H9_9ASCO5.890e-735.80Uncharacterized protein n=1 Tax=Saprochaete ingens... [more]
A0A1Y2EU08_9BASI8.000e-737.80Temperature dependent protein affecting M2 dsRNA r... [more]
A0A0L0SZB6_ALLM32.050e-641.03Uncharacterized protein n=1 Tax=Allomyces macrogyn... [more]
A0A7S2BM54_9DINO2.500e-537.68Hypothetical protein n=1 Tax=Alexandrium andersoni... [more]
A0A194SBH0_RHOGW3.420e-539.02XPGN domain-containing protein n=2 Tax=Rhodotorula... [more]
A0A0D6EFR3_SPOSA3.420e-537.04SPOSA6832_00165-mRNA-1:cds (Fragment) n=1 Tax=Spor... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig106134contigM-pyrifera_M_contig106134:2..238 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score68.9
Seed ortholog evalue1.2e-09
Seed eggNOG ortholog936053.I1BLU1
Hectar predicted targeting categoryother localisation
GOsGO:0000932,GO:0003674,GO:0003824,GO:0004518,GO:0004519,GO:0004520,GO:0004536,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005844,GO:0006139,GO:0006259,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009987,GO:0010494,GO:0016787,GO:0016788,GO:0031974,GO:0031981,GO:0032991,GO:0033554,GO:0034399,GO:0034641,GO:0035770,GO:0036464,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044260,GO:0044419,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0050896,GO:0051704,GO:0051716,GO:0070013,GO:0071704,GO:0090304,GO:0090305,GO:0140097,GO:1901360,GO:1990904
EggNOG free text desc.Temperature dependent protein affecting M2 dsRNA replication
EggNOG OGs1GRVD@112252,2QVHA@2759,39S2T@33154,3NYMB@4751,COG5366@1
COG Functional cat.S
Best tax levelFungi incertae sedis
Best eggNOG OGNA|NA|NA
Exons1
Model size237
Cds size237
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815571.2816713-CDS-M-pyrifera_M_contig106134:1..2381622815571.2816713-CDS-M-pyrifera_M_contig106134:1..238Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig106134 2..238 +
1692277468.8794384-CDS-M-pyrifera_M_contig106134:1..2381692277468.8794384-CDS-M-pyrifera_M_contig106134:1..238Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig106134 2..238 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig106134.1328.1prot_M-pyrifera_M_contig106134.1328.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig106134 2..238 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig106134.1328.1

>prot_M-pyrifera_M_contig106134.1328.1 ID=prot_M-pyrifera_M_contig106134.1328.1|Name=mRNA_M-pyrifera_M_contig106134.1328.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=79bp
QLIQTESLEKLAGLRVGLDANAWLRQLSLSEPRQAAMGGLPLTLEETVAA
NVAKWRQAGTVPTFVFNGIGIKRERAPLT
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mRNA from alignment at M-pyrifera_M_contig106134:2..238+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig106134.1328.1 ID=mRNA_M-pyrifera_M_contig106134.1328.1|Name=mRNA_M-pyrifera_M_contig106134.1328.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=237bp|location=Sequence derived from alignment at M-pyrifera_M_contig106134:2..238+ (Macrocystis pyrifera P11B4 male)
CAGCTCATCCAGACGGAGAGCCTCGAGAAGCTCGCGGGCCTGCGCGTGGG CCTGGACGCCAACGCTTGGCTGCGTCAGTTGTCGCTTTCGGAGCCCCGCC AGGCGGCGATGGGCGGCCTCCCCCTCACCCTCGAGGAGACGGTGGCCGCC AACGTCGCCAAGTGGCGCCAGGCTGGCACTGTGCCCACCTTCGTGTTCAA CGGCATTGGCATCAAGCGCGAGAGAGCCCCGCTCACT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig106134:2..238+

>mRNA_M-pyrifera_M_contig106134.1328.1 ID=mRNA_M-pyrifera_M_contig106134.1328.1|Name=mRNA_M-pyrifera_M_contig106134.1328.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=474bp|location=Sequence derived from alignment at M-pyrifera_M_contig106134:2..238+ (Macrocystis pyrifera P11B4 male)
CAGCTCATCCAGACGGAGAGCCTCGAGAAGCTCGCGGGCCTGCGCGTGGG
CCTGGACGCCAACGCTTGGCTGCGTCAGTTGTCGCTTTCGGAGCCCCGCC
AGGCGGCGATGGGCGGCCTCCCCCTCACCCTCGAGGAGACGGTGGCCGCC
AACGTCGCCAAGTGGCGCCAGGCTGGCACTGTGCCCACCTTCGTGTTCAA
CGGCATTGGCATCAAGCGCGAGAGAGCCCCGCTCACTCAGCTCATCCAGA
CGGAGAGCCTCGAGAAGCTCGCGGGCCTGCGCGTGGGCCTGGACGCCAAC
GCTTGGCTGCGTCAGTTGTCGCTTTCGGAGCCCCGCCAGGCGGCGATGGG
CGGCCTCCCCCTCACCCTCGAGGAGACGGTGGCCGCCAACGTCGCCAAGT
GGCGCCAGGCTGGCACTGTGCCCACCTTCGTGTTCAACGGCATTGGCATC
AAGCGCGAGAGAGCCCCGCTCACT
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