mRNA_M-pyrifera_M_contig106132.1327.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig106132.1327.1
Unique NamemRNA_M-pyrifera_M_contig106132.1327.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig106132.1327.1 vs. uniprot
Match: A0A7S2AB69_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Stereomyxa ramosa TaxID=1078864 RepID=A0A7S2AB69_9EUKA)

HSP 1 Score: 147 bits (372), Expect = 5.110e-43
Identity = 75/129 (58.14%), Postives = 89/129 (68.99%), Query Frame = 1
Query:   58 DVYMHNPRGSNNRLNGNNQNRDNANRMFDSQNNDKGGYCWGPSMYFYAGSELMIEWTAQHAC----NNPKVHCNVVLQYMCGDEVRDGTTTDTIPDNEGQYN--QQVNPNPLEGGEPGPVFKYGMHEDY 426
            D+YMHN RGSNNRLNGN  NR N NRM D+QNN KGGY +GP MY++ GS++ IEWT QH C    +   + C ++LQYMCGDEVRDGTTT TIPDNE  YN  ++       GGE    + YGMHE Y
Sbjct:    1 DIYMHNMRGSNNRLNGNGVNRANNNRMCDTQNNAKGGYAYGPPMYYHVGSQVTIEWTNQHGCGPKSSQKNLDCQLILQYMCGDEVRDGTTTTTIPDNEETYNTKEEDTSGDFGGGE---QYLYGMHESY 126          
BLAST of mRNA_M-pyrifera_M_contig106132.1327.1 vs. uniprot
Match: A0A7S1V7Y5_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Sexangularia sp. CB-2014 TaxID=1486929 RepID=A0A7S1V7Y5_9EUKA)

HSP 1 Score: 145 bits (366), Expect = 4.270e-40
Identity = 79/144 (54.86%), Postives = 92/144 (63.89%), Query Frame = 1
Query:   22 LVASLLVCGAL--ADVYMHNPRGSNNRLNGNNQNRDNANRMFDSQNNDKGGYCWGPSMYFYAGSELMIEWTAQHACNNPKVHCNVVLQYMCGDE-------VRDGTTTDTIPDNEGQYNQQVNPNPLEGGEPGPVFKYGMHEDY 426
            LVA+ L+  AL  ADVYMHNPRGSN+R    NQNR+NANR+FDSQNN +GGY   P M FY GS L +EWTAQHAC N   HC  +LQYMCG++       +RDGT TD IPDN  +          E  E G  + YGMHE Y
Sbjct:    2 LVAATLLLSALVSADVYMHNPRGSNDRAGEGNQNRNNANRLFDSQNNAQGGYGVAPEMKFYEGSWLTVEWTAQHACGNDNTHCQFILQYMCGNKDAKALERIRDGTVTDRIPDNAEEA--------AEMNEGGVTYVYGMHESY 137          
BLAST of mRNA_M-pyrifera_M_contig106132.1327.1 vs. uniprot
Match: R7TP97_CAPTE (Uncharacterized protein n=1 Tax=Capitella teleta TaxID=283909 RepID=R7TP97_CAPTE)

HSP 1 Score: 147 bits (372), Expect = 1.500e-38
Identity = 77/137 (56.20%), Postives = 95/137 (69.34%), Query Frame = 1
Query:   16 VALVASLLVCGALADVYMHNPRGSNNRLNGNNQNRDNANRMFDSQNNDKGGYCWGPSMYFYAGSELMIEWTAQHACNNPKVHCNVVLQYMCGDEVRDGTTTDTIPDNEGQYNQQVNPNPLEGGEPGPVFKYGMHEDY 426
            + +V  LL   A AD+Y+HNPRGSNNRL+   + R+NANR+FDSQNND+GGY  G ++Y+YAGS+LMIEWT QH+C NPK HC +VLQYMC   VRDG+TT TIPDN  Q         L         +YGMHE+Y
Sbjct:    3 IIIVLVLLGSTAKADIYLHNPRGSNNRLDEAGRERNNANRLFDSQNNDRGGYNVG-NLYYYAGSKLMIEWTNQHSCMNPKSHCEIVLQYMCSSMVRDGSTTSTIPDNPTQCTDYDCNTDL---------RYGMHENY 129          
BLAST of mRNA_M-pyrifera_M_contig106132.1327.1 vs. uniprot
Match: H2Z0Z2_CIOSA (Uncharacterized protein n=1 Tax=Ciona savignyi TaxID=51511 RepID=H2Z0Z2_CIOSA)

HSP 1 Score: 139 bits (350), Expect = 1.660e-37
Identity = 73/137 (53.28%), Postives = 94/137 (68.61%), Query Frame = 1
Query:   16 VALVASLLVCGALADVYMHNPRGSNNRLNGNNQNRDNANRMFDSQNNDKGGYCWGPSMYFYAGSELMIEWTAQHACNNPKVHCNVVLQYMCGDEVRDGTTTDTIPDNEGQYNQQVNPNPLEGGEPGPVFKYGMHEDY 426
            + L   L VC   AD+YMHNPRGSNNRLN   + R+NANRMFDSQNN++GGY  G ++++YAGS+L IEWT QH+C N   +C++++QYMCG  VRDGT T TIP N  Q N  +N N          + +GMHED+
Sbjct:    8 IVLAVLLQVC--FADIYMHNPRGSNNRLNERGRGRNNANRMFDSQNNNRGGYNVG-NLFYYAGSKLRIEWTNQHSCGNQNANCDIIIQYMCGPLVRDGTVTTTIPTNPTQCNN-LNCNT--------DYTFGMHEDF 132          
BLAST of mRNA_M-pyrifera_M_contig106132.1327.1 vs. uniprot
Match: UPI001BB1D598 (protein DD3-3-like n=1 Tax=Lytechinus variegatus TaxID=7654 RepID=UPI001BB1D598)

HSP 1 Score: 143 bits (360), Expect = 6.730e-37
Identity = 77/137 (56.20%), Postives = 97/137 (70.80%), Query Frame = 1
Query:   16 VALVASLLVCGALADVYMHNPRGSNNRLNGNNQNRDNANRMFDSQNNDKGGYCWGPSMYFYAGSELMIEWTAQHACNNPKVHCNVVLQYMCGDEVRDGTTTDTIPDNEGQYNQQVNPNPLEGGEPGPVFKYGMHEDY 426
            VA++A ++V  A ADVYMHNPRGSNNRL+ N + R+N NRMFDSQNN++GGY  G S+Y+ AGS L IEWT QH+C +P  HC +VLQYMCGD VRDGTTT TIP+N         PN     +     +YGM+E++
Sbjct:    5 VAILAVIVV--ANADVYMHNPRGSNNRLDENGRERNNGNRMFDSQNNNRGGYNVG-SLYYTAGSVLPIEWTNQHSCGDPNCHCEIVLQYMCGDWVRDGTTTSTIPEN---------PNQCANYDCNTDIQYGMNENF 129          
BLAST of mRNA_M-pyrifera_M_contig106132.1327.1 vs. uniprot
Match: A0A6F9D8C0_9ASCI (Protein DD3-3 n=1 Tax=Phallusia mammillata TaxID=59560 RepID=A0A6F9D8C0_9ASCI)

HSP 1 Score: 142 bits (358), Expect = 1.240e-36
Identity = 75/135 (55.56%), Postives = 95/135 (70.37%), Query Frame = 1
Query:   22 LVASLLVCGALADVYMHNPRGSNNRLNGNNQNRDNANRMFDSQNNDKGGYCWGPSMYFYAGSELMIEWTAQHACNNPKVHCNVVLQYMCGDEVRDGTTTDTIPDNEGQYNQQVNPNPLEGGEPGPVFKYGMHEDY 426
            + ++LL+  A ADVY+HN RGSNNR N N +NR+NANRMFDSQNN +GGY  G S+Y+Y GS+L +EWT QH+C N   HC++VLQYMCG +VRDGT+T TIP N  Q         L+  E     +YGMHED+
Sbjct:    9 IFSTLLLKCAFADVYLHNLRGSNNRWNENGRNRNNANRMFDSQNNARGGYNVG-SLYYYVGSKLQLEWTNQHSCYNENNHCDIVLQYMCGPQVRDGTSTSTIPSNPAQCEN------LDCNED---RRYGMHEDF 133          
BLAST of mRNA_M-pyrifera_M_contig106132.1327.1 vs. uniprot
Match: A0A6P4ZIN4_BRABE (protein DD3-3-like n=5 Tax=Branchiostoma TaxID=7737 RepID=A0A6P4ZIN4_BRABE)

HSP 1 Score: 142 bits (358), Expect = 1.280e-36
Identity = 75/135 (55.56%), Postives = 90/135 (66.67%), Query Frame = 1
Query:   22 LVASLLVCGALADVYMHNPRGSNNRLNGNNQNRDNANRMFDSQNNDKGGYCWGPSMYFYAGSELMIEWTAQHACNNPKVHCNVVLQYMCGDEVRDGTTTDTIPDNEGQYNQQVNPNPLEGGEPGPVFKYGMHEDY 426
            L+   L      DVYMHNPRGSNNRL+   ++R+NANR+FDSQNND+GGY  G S+Y+Y GS L IEWT QH+C+NP  HC +VLQYMCGD VRDGTT  TIP         VNP   +  +     +YGMHE Y
Sbjct:    5 LLLLALAVAVQGDVYMHNPRGSNNRLDEARRDRNNANRLFDSQNNDRGGYNVG-SLYYYEGSHLSIEWTNQHSCDNPNNHCELVLQYMCGDLVRDGTTVTTIP---------VNPMQCQNYDCNRDKRYGMHETY 129          
BLAST of mRNA_M-pyrifera_M_contig106132.1327.1 vs. uniprot
Match: A0A7J7JYK5_BUGNE (Uncharacterized protein n=1 Tax=Bugula neritina TaxID=10212 RepID=A0A7J7JYK5_BUGNE)

HSP 1 Score: 136 bits (343), Expect = 1.320e-36
Identity = 71/140 (50.71%), Postives = 92/140 (65.71%), Query Frame = 1
Query:   13 FVALVASLLVCGALA--DVYMHNPRGSNNRLNGNNQNRDNANRMFDSQNNDKGGYCWGPSMYFYAGSELMIEWTAQHACNNPKVHCNVVLQYMCGDEVRDGTTTDTIPDNEGQYNQQVNPNPLEGGEPGPVFKYGMHEDY 426
            F A +  +L+ G L   D+YMHNPRGSNNRL+   + R+N NR+FDSQNND+GGY  G S+Y+YAGS L IEWT+QH+C  P  HC +++QYMC + +RDG TT TIPDN       +    L         +YGMHED+
Sbjct:   20 FYANLGFILLIGQLVNGDIYMHNPRGSNNRLDEQGRERNNGNRVFDSQNNDRGGYNVG-SLYYYAGSILPIEWTSQHSCGGPNNHCELIVQYMCDENLRDGATTTTIPDNPALCENYLCNTDL---------RYGMHEDF 149          
BLAST of mRNA_M-pyrifera_M_contig106132.1327.1 vs. uniprot
Match: A0A6S7KUR8_PARCT (DD3-3-like n=2 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7KUR8_PARCT)

HSP 1 Score: 136 bits (342), Expect = 1.730e-36
Identity = 71/132 (53.79%), Postives = 89/132 (67.42%), Query Frame = 1
Query:   34 LLVCGALADVYMHNPRGSNNRLNGNNQNRDNANRMFDSQNNDKGGYCWGPSMYFYAGSELMIEWTAQHACNNPKVHCNVVLQYMCGDEVRDGTTTDTIPDNEGQY-NQQVNPNPLEGGEPGPVFKYGMHEDY 426
            LL+    AD+Y+HNPRGSNNRL+   + R+NANR+FDSQNN++GGY  G S+Y+Y  S L +EWT QH+C +   HC ++LQYMCGD VRDGTTT TIPDN  Q  N   N +            +GMHEDY
Sbjct:    9 LLLATVQADMYLHNPRGSNNRLDEAKRERNNANRLFDSQNNNRGGYNVG-SLYYYQESMLSVEWTNQHSCGDQNTHCEIILQYMCGDLVRDGTTTQTIPDNRVQCKNYNCNTDKT----------FGMHEDY 129          
BLAST of mRNA_M-pyrifera_M_contig106132.1327.1 vs. uniprot
Match: A0A6B2KZZ5_9EUKA (Uncharacterized protein n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2KZZ5_9EUKA)

HSP 1 Score: 140 bits (354), Expect = 2.390e-36
Identity = 76/139 (54.68%), Postives = 92/139 (66.19%), Query Frame = 1
Query:   16 VALVASLLVCGALADVYMHNPRGSNNRLNGNNQNRDNANRMFDSQNNDKGGYCWGPSMYFYAGSELMIEWTAQHAC--NNPKVHCNVVLQYMCGDEVRDGTTTDTIPDNEGQYNQQVNPNPLEGGEPGPVFKYGMHEDY 426
            V L+A  LV GAL DVY+HNPRGSNNR      N +NANRM+DSQNN+KGGYCWGP M FY  S L +EWTAQH C  +N  V C+++LQYMC   VRDG  TDTI ++       +  +P  G     V+KYGMHE +
Sbjct:    5 VLLIALSLVLGALGDVYLHNPRGSNNRNRETGTNVNNANRMYDSQNNNKGGYCWGPPMTFYEKSLLQVEWTAQHGCGTDNNNVDCDLILQYMCHPLVRDGFVTDTITED---TKDTMEVDPKTGVL---VYKYGMHEPF 137          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig106132.1327.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S2AB69_9EUKA5.110e-4358.14Hypothetical protein (Fragment) n=1 Tax=Stereomyxa... [more]
A0A7S1V7Y5_9EUKA4.270e-4054.86Hypothetical protein (Fragment) n=1 Tax=Sexangular... [more]
R7TP97_CAPTE1.500e-3856.20Uncharacterized protein n=1 Tax=Capitella teleta T... [more]
H2Z0Z2_CIOSA1.660e-3753.28Uncharacterized protein n=1 Tax=Ciona savignyi Tax... [more]
UPI001BB1D5986.730e-3756.20protein DD3-3-like n=1 Tax=Lytechinus variegatus T... [more]
A0A6F9D8C0_9ASCI1.240e-3655.56Protein DD3-3 n=1 Tax=Phallusia mammillata TaxID=5... [more]
A0A6P4ZIN4_BRABE1.280e-3655.56protein DD3-3-like n=5 Tax=Branchiostoma TaxID=773... [more]
A0A7J7JYK5_BUGNE1.320e-3650.71Uncharacterized protein n=1 Tax=Bugula neritina Ta... [more]
A0A6S7KUR8_PARCT1.730e-3653.79DD3-3-like n=2 Tax=Paramuricea clavata TaxID=31754... [more]
A0A6B2KZZ5_9EUKA2.390e-3654.68Uncharacterized protein n=1 Tax=Arcella intermedia... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig106132contigM-pyrifera_M_contig106132:4..429 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score146.0
Seed ortholog evalue1.4e-32
Seed eggNOG ortholog27923.ML154168a-PA
Hectar predicted targeting categorysignal peptide
EggNOG OGs28JHH@1,2QRWS@2759,38DYN@33154,3BH76@33208
Best tax levelMetazoa
Best eggNOG OGNA|NA|NA
Exons1
Model size426
Cds size426
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815571.2398496-CDS-M-pyrifera_M_contig106132:3..4291622815571.2398496-CDS-M-pyrifera_M_contig106132:3..429Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig106132 4..429 -
1692277468.8696108-CDS-M-pyrifera_M_contig106132:3..4291692277468.8696108-CDS-M-pyrifera_M_contig106132:3..429Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig106132 4..429 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig106132.1327.1prot_M-pyrifera_M_contig106132.1327.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig106132 4..429 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig106132.1327.1

>prot_M-pyrifera_M_contig106132.1327.1 ID=prot_M-pyrifera_M_contig106132.1327.1|Name=mRNA_M-pyrifera_M_contig106132.1327.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=142bp
MRFAFVALVASLLVCGALADVYMHNPRGSNNRLNGNNQNRDNANRMFDSQ
NNDKGGYCWGPSMYFYAGSELMIEWTAQHACNNPKVHCNVVLQYMCGDEV
RDGTTTDTIPDNEGQYNQQVNPNPLEGGEPGPVFKYGMHEDY
back to top

mRNA from alignment at M-pyrifera_M_contig106132:4..429-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig106132.1327.1 ID=mRNA_M-pyrifera_M_contig106132.1327.1|Name=mRNA_M-pyrifera_M_contig106132.1327.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=426bp|location=Sequence derived from alignment at M-pyrifera_M_contig106132:4..429- (Macrocystis pyrifera P11B4 male)
ATGCGCTTTGCTTTTGTGGCGCTCGTCGCCAGCCTGCTGGTGTGCGGTGC GCTCGCCGATGTGTACATGCACAACCCGCGCGGCTCGAACAACCGCCTCA ACGGCAACAACCAGAACCGCGACAACGCCAACAGGATGTTCGACTCGCAG AACAACGACAAGGGCGGCTACTGCTGGGGCCCGTCGATGTACTTCTACGC CGGCTCGGAGCTGATGATCGAGTGGACGGCGCAGCACGCCTGCAACAACC CCAAGGTCCACTGCAACGTGGTCCTGCAGTACATGTGCGGCGACGAGGTC CGCGACGGCACCACCACGGACACGATCCCCGACAACGAGGGCCAGTACAA CCAGCAGGTCAACCCCAACCCGCTCGAGGGCGGCGAGCCCGGCCCCGTCT TCAAGTACGGCATGCACGAGGACTAC
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig106132:4..429-

>mRNA_M-pyrifera_M_contig106132.1327.1 ID=mRNA_M-pyrifera_M_contig106132.1327.1|Name=mRNA_M-pyrifera_M_contig106132.1327.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=852bp|location=Sequence derived from alignment at M-pyrifera_M_contig106132:4..429- (Macrocystis pyrifera P11B4 male)
ATGCGCTTTGCTTTTGTGGCGCTCGTCGCCAGCCTGCTGGTGTGCGGTGC
GCTCGCCGATGTGTACATGCACAACCCGCGCGGCTCGAACAACCGCCTCA
ACGGCAACAACCAGAACCGCGACAACGCCAACAGGATGTTCGACTCGCAG
AACAACGACAAGGGCGGCTACTGCTGGGGCCCGTCGATGTACTTCTACGC
CGGCTCGGAGCTGATGATCGAGTGGACGGCGCAGCACGCCTGCAACAACC
CCAAGGTCCACTGCAACGTGGTCCTGCAGTACATGTGCGGCGACGAGGTC
CGCGACGGCACCACCACGGACACGATCCCCGACAACGAGGGCCAGTACAA
CCAGCAGGTCAACCCCAACCCGCTCGAGGGCGGCGAGCCCGGCCCCGTCT
TCAAGTACGGCATGCACGAGGACTACATGCGCTTTGCTTTTGTGGCGCTC
GTCGCCAGCCTGCTGGTGTGCGGTGCGCTCGCCGATGTGTACATGCACAA
CCCGCGCGGCTCGAACAACCGCCTCAACGGCAACAACCAGAACCGCGACA
ACGCCAACAGGATGTTCGACTCGCAGAACAACGACAAGGGCGGCTACTGC
TGGGGCCCGTCGATGTACTTCTACGCCGGCTCGGAGCTGATGATCGAGTG
GACGGCGCAGCACGCCTGCAACAACCCCAAGGTCCACTGCAACGTGGTCC
TGCAGTACATGTGCGGCGACGAGGTCCGCGACGGCACCACCACGGACACG
ATCCCCGACAACGAGGGCCAGTACAACCAGCAGGTCAACCCCAACCCGCT
CGAGGGCGGCGAGCCCGGCCCCGTCTTCAAGTACGGCATGCACGAGGACT
AC
back to top