mRNA_M-pyrifera_M_contig106127.1324.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig106127.1324.1
Unique NamemRNA_M-pyrifera_M_contig106127.1324.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig106127.1324.1 vs. uniprot
Match: L8H2D6_ACACA (Uncharacterized protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8H2D6_ACACA)

HSP 1 Score: 169 bits (428), Expect = 2.990e-50
Identity = 87/154 (56.49%), Postives = 111/154 (72.08%), Query Frame = 1
Query:    1 FALRHLGMRNGVECWIAGLVGGYVGFGESKGISGAVNNQIVLYLFARGIQGLFVTAVDKGVLPPAMDIRKGRGFRCLAAFSLALILYLTDYQAHNLSRGFMATMDNLYYDSNE--GPMLPPANFAPFVAVVMLSLLAPLAPSLSLDNLLSFVDR 456
            + LR +G+  G+ECWIAG       FG+SKG+SG+VNNQIVLYLFARGI GL V+ V +GV+P  +D+R  RGFR  A FSLALILYLT+Y+   L+  FMATM+NLYYDS     P+LP   F PF A+  LSLL+PL PSL+L+++L  + R
Sbjct:   55 YILRRMGVDGGLECWIAG-------FGDSKGLSGSVNNQIVLYLFARGIYGLLVSGVRRGVIPQTLDVRSERGFRIFAGFSLALILYLTEYEPDTLNPSFMATMNNLYYDSETLPQPLLPAKRFVPFAALATLSLLSPLFPSLTLESMLGRILR 201          
BLAST of mRNA_M-pyrifera_M_contig106127.1324.1 vs. uniprot
Match: A0A2P6N0S2_9EUKA (Uncharacterized protein n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6N0S2_9EUKA)

HSP 1 Score: 167 bits (422), Expect = 5.990e-49
Identity = 83/147 (56.46%), Postives = 108/147 (73.47%), Query Frame = 1
Query:   10 RHLGMRNGVECWIAGLVGGYVGFGESKGISGAVNNQIVLYLFARGIQGLFVTAVDKGVLPPAMDIRKGRGFRCLAAFSLALILYLTDYQAHNLSRGFMATMDNLYYDSNEGPMLPP--ANFAPFVAVVMLSLLAPLAPSLSLDNLLS 444
            R++G+  GV+ WIAG +GGY  FG++KGISG+VNNQIVLYLFARG+QG  ++ V++GV+P  MD+R   GFR LA FSLALILYLT+Y+   LS  F  TMD LYYDS+ GPM+    A F PF+ +  +SLL PL  SL L+ +L+
Sbjct:   97 RNVGVSGGVDSWIAGFIGGYWAFGDNKGISGSVNNQIVLYLFARGLQGALISGVERGVIPKKMDVRTPGGFRILAGFSLALILYLTEYEPKTLSTAFWRTMDYLYYDSDSGPMMTSVEAKFIPFIIMGSVSLLYPLRESLGLEQMLA 243          
BLAST of mRNA_M-pyrifera_M_contig106127.1324.1 vs. uniprot
Match: A0A6A5BW36_NAEFO (Uncharacterized protein n=1 Tax=Naegleria fowleri TaxID=5763 RepID=A0A6A5BW36_NAEFO)

HSP 1 Score: 166 bits (421), Expect = 7.350e-47
Identity = 87/149 (58.39%), Postives = 104/149 (69.80%), Query Frame = 1
Query:   10 RHLGMRNGVECWIAGLVGGYVGFGESKGISGAVNNQIVLYLFARGIQGLFVTAVDKGVLPPAMDIRKGRGFRCLAAFSLALILYLTDYQAHNLSRGFMATMDNLYYDSNEGPMLPPANFAPFVAVVMLSLLAPL-APSLSLDNLLSFVD 453
             HL +R+G++ WIAG +GGYV FGESKGISGAVNNQIVLYLFARGI G        G +P  MDI    GFR  A FSLALILYLTDYQ+ +L  GFM+TM++LY++SN+G +    NFAPFV VV L LL     P L L+N+L   D
Sbjct:  257 NHLNIRSGIDAWIAGFIGGYVAFGESKGISGAVNNQIVLYLFARGIDGGLRALATNGYIPEWMDITTPVGFRLFAGFSLALILYLTDYQSSSLRSGFMSTMEHLYHESNKGTLRTEVNFAPFVTVVTLCLLLGYWFPQLRLENVLQVTD 405          
BLAST of mRNA_M-pyrifera_M_contig106127.1324.1 vs. uniprot
Match: UPI001CFD6898 (uncharacterized protein n=1 Tax=Naegleria lovaniensis TaxID=51637 RepID=UPI001CFD6898)

HSP 1 Score: 166 bits (420), Expect = 1.170e-46
Identity = 89/149 (59.73%), Postives = 102/149 (68.46%), Query Frame = 1
Query:   10 RHLGMRNGVECWIAGLVGGYVGFGESKGISGAVNNQIVLYLFARGIQGLFVTAVDKGVLPPAMDIRKGRGFRCLAAFSLALILYLTDYQAHNLSRGFMATMDNLYYDSNEGPMLPPANFAPFVAVVMLSLLAPL-APSLSLDNLLSFVD 453
              L +RNG++ WIAG +GGYV FGESKGISGAVNNQIVLYLFARGI G        G +P  MDI    GFR  A FSLALILYLTDYQ  +L  GFM TM++LY++SN+G +    NFAPFV VV L LL     P L LDN+L  VD
Sbjct:  263 NQLHIRNGIDSWIAGFIGGYVAFGESKGISGAVNNQIVLYLFARGIDGGLRALATNGYIPEWMDITTPVGFRLFAGFSLALILYLTDYQPSSLRSGFMTTMEHLYHESNKGTLRTEVNFAPFVTVVTLCLLLGYWFPQLRLDNVLQVVD 411          
BLAST of mRNA_M-pyrifera_M_contig106127.1324.1 vs. uniprot
Match: D2VCK1_NAEGR (Predicted protein n=1 Tax=Naegleria gruberi TaxID=5762 RepID=D2VCK1_NAEGR)

HSP 1 Score: 154 bits (390), Expect = 8.820e-44
Identity = 82/149 (55.03%), Postives = 99/149 (66.44%), Query Frame = 1
Query:   10 RHLGMRNGVECWIAGLVGGYVGFGESKGISGAVNNQIVLYLFARGIQGLFVTAVDKGVLPPAMDIRKGRGFRCLAAFSLALILYLTDYQAHNLSRGFMATMDNLYYDSNEGPMLPPANFAPFVAVVMLSLLAPL-APSLSLDNLLSFVD 453
             +L +RNG++  +AG VGG + FGESKGISGAVNNQIVLYLFARGI G       KG +P  MDI    GFR  A FSLAL+LYLTD+Q   L  GFM+TM  LY++SN+G M  P NFAPFV  + + LL     P   L+N+L  VD
Sbjct:  112 NYLNVRNGLDALLAGFVGGSIAFGESKGISGAVNNQIVLYLFARGIDGGLKALATKGYIPEIMDISTPNGFRLFAGFSLALVLYLTDHQPRALKSGFMSTMKYLYHESNDGTMSVPINFAPFVTFITICLLLGYWFPQFRLENVLQRVD 260          
BLAST of mRNA_M-pyrifera_M_contig106127.1324.1 vs. uniprot
Match: F0Z906_DICPU (Uncharacterized protein n=1 Tax=Dictyostelium purpureum TaxID=5786 RepID=F0Z906_DICPU)

HSP 1 Score: 140 bits (353), Expect = 1.700e-38
Identity = 67/147 (45.58%), Postives = 102/147 (69.39%), Query Frame = 1
Query:   10 RHLGMRNGVECWIAGLVGGYVGFGESKGISGAVNNQIVLYLFARGIQGLFVTAVDKGVLPPAMDIRKGRGFRCLAAFSLALILYLTDYQAHNLSRGFMATMDNLYYDSNEGPMLPPAN--FAPFVAVVMLSLLAPLAPSLSLDNLLS 444
            RH G++ G++  +AG VGGY+ FG+SK +SG+VNNQIVLYLFAR + G+    V + ++P  +     +GFR  AA +LALILYLT+Y+   L++GFM TM  LY+ S+ GP+    +  F P ++++++SL+  + P LSLDN+L+
Sbjct:  102 RHFGIKGGIDSLVAGFVGGYIAFGDSKSVSGSVNNQIVLYLFARALIGIIQGMVKRKIIPQTLSTTTPKGFRIFAAVTLALILYLTEYEPDTLNQGFMGTMTVLYHKSDSGPIFEKDDNKFLPILSLIVISLIGSVYPKLSLDNILT 248          
BLAST of mRNA_M-pyrifera_M_contig106127.1324.1 vs. uniprot
Match: UPI000644D0FD (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI000644D0FD)

HSP 1 Score: 140 bits (353), Expect = 4.090e-38
Identity = 72/152 (47.37%), Postives = 103/152 (67.76%), Query Frame = 1
Query:   10 RHLGMRNGVECWIAGLVGGYVGFGESKGISGAVNNQIVLYLFARGIQGLFVTAVDKGVLPPAMDIRKGRGFRCLAAFSLALILYLTDYQAHNLSRGFMATMDNLYYDSNEGPMLPPAN--FAPFVAVVMLSLLAPLAPSLSLDNLLSFVDRI 459
            R++G++ GVE  IAG VGGY  FG+SK  SG+VNNQIVLYLFAR + G   + V + ++P  +     +GFR  A  +LA+ILYLT+Y+   L+  FM+TM  LY+ S+ GPMLP  +  F+P + VV++SLL    PSL L+N+L+ V ++
Sbjct:  136 RNIGVKGGVESLIAGFVGGYYAFGDSKSTSGSVNNQIVLYLFARALIGFIQSGVKRKIIPETLSTTTPQGFRIFAGVTLAMILYLTEYEPDTLNPSFMSTMTYLYHKSDSGPMLPADDKKFSPIILVVLVSLLGVYFPSLQLENILTNVFKL 287          
BLAST of mRNA_M-pyrifera_M_contig106127.1324.1 vs. uniprot
Match: A0A8J4Q4S1_9MYCE (Uncharacterized protein n=1 Tax=Polysphondylium violaceum TaxID=133409 RepID=A0A8J4Q4S1_9MYCE)

HSP 1 Score: 135 bits (339), Expect = 2.080e-36
Identity = 66/147 (44.90%), Postives = 99/147 (67.35%), Query Frame = 1
Query:   10 RHLGMRNGVECWIAGLVGGYVGFGESKGISGAVNNQIVLYLFARGIQGLFVTAVDKGVLPPAMDIRKGRGFRCLAAFSLALILYLTDYQAHNLSRGFMATMDNLYYDSNEGPMLPPAN--FAPFVAVVMLSLLAPLAPSLSLDNLLS 444
            RH G++ GVE  IAG VGGY+ FGESK  SG+VNNQIVLYLFAR + G     V + ++P  +     +GF+  A  +LA+ILYLT+Y+   L+  FM+TM  LY+ S+ GP++  A+  F P + ++++SLL  + P+ SL+++L+
Sbjct:  101 RHFGIKGGVESLIAGFVGGYIAFGESKSTSGSVNNQIVLYLFARALIGFIQGFVKRKIIPENLSTTHPQGFKIFAGVTLAMILYLTEYEPETLNPAFMSTMTTLYHKSDSGPLMEKADQKFLPVIMIILISLLGSVFPAFSLESILT 247          
BLAST of mRNA_M-pyrifera_M_contig106127.1324.1 vs. uniprot
Match: Q55FL0_DICDI (Uncharacterized protein n=1 Tax=Dictyostelium discoideum TaxID=44689 RepID=Q55FL0_DICDI)

HSP 1 Score: 134 bits (336), Expect = 6.020e-36
Identity = 66/146 (45.21%), Postives = 99/146 (67.81%), Query Frame = 1
Query:    7 LRHLGMRNGVECWIAGLVGGYVGFGESKGISGAVNNQIVLYLFARGIQGLFVTAVDKGVLPPAMDIRKGRGFRCLAAFSLALILYLTDYQAHNLSRGFMATMDNLYYDSNEGPMLPPAN--FAPFVAVVMLSLLAPLAPSLSLDNL 438
            LR++G++ G++  +AG +GGY  FGESK +SG+VNNQIVLYLFAR + G+    V + ++P ++     +GFR  AA +LALILYLT+Y+  NL+  FM TM  LY+ S+ GPM+   +  F   + +++LSL   + P LSLD++
Sbjct:  101 LRNIGIKGGIDSLVAGFIGGYYAFGESKSVSGSVNNQIVLYLFARALIGIIQGMVKRKIIPQSLSTTTPKGFRIFAAVTLALILYLTEYEPENLNASFMGTMTVLYHKSDSGPMIEKGDHKFGIPMIIIILSLFGGIFPKLSLDSM 246          
BLAST of mRNA_M-pyrifera_M_contig106127.1324.1 vs. uniprot
Match: F4Q353_CAVFA (Transmembrane protein n=1 Tax=Cavenderia fasciculata (strain SH3) TaxID=1054147 RepID=F4Q353_CAVFA)

HSP 1 Score: 135 bits (341), Expect = 5.360e-34
Identity = 67/148 (45.27%), Postives = 100/148 (67.57%), Query Frame = 1
Query:   10 RHLGMRNGVECWIAGLVGGYVGFGESKGISGAVNNQIVLYLFARGIQGLFVTAVDKGVLPPAMDIRKGRGFRCLAAFSLALILYLTDYQAHNLSRGFMATMDNLYYDSNEGPMLPPAN--FAPFVAVVMLSLLAPLA-PSLSLDNLLS 444
            R++G++ G++  +AG +GGYV FG+SK  SG+VNNQIVLYLFAR + G+  + V + ++P  +     +GFR  A  +LALILYLT+Y+   L+  FM TM  LY+ S+ GPMLP  +  F+P + V+++S+      P LSLDN+L+
Sbjct:  675 RNIGIKGGIDSLVAGFIGGYVAFGDSKSTSGSVNNQIVLYLFARALIGIIQSGVKRNIIPQQLSTTTPQGFRIFAGVTLALILYLTEYEPDTLNSSFMGTMTYLYHKSDSGPMLPQEDRKFSPIILVILISIATSWKFPQLSLDNILA 822          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig106127.1324.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
L8H2D6_ACACA2.990e-5056.49Uncharacterized protein n=1 Tax=Acanthamoeba caste... [more]
A0A2P6N0S2_9EUKA5.990e-4956.46Uncharacterized protein n=1 Tax=Planoprotostelium ... [more]
A0A6A5BW36_NAEFO7.350e-4758.39Uncharacterized protein n=1 Tax=Naegleria fowleri ... [more]
UPI001CFD68981.170e-4659.73uncharacterized protein n=1 Tax=Naegleria lovanien... [more]
D2VCK1_NAEGR8.820e-4455.03Predicted protein n=1 Tax=Naegleria gruberi TaxID=... [more]
F0Z906_DICPU1.700e-3845.58Uncharacterized protein n=1 Tax=Dictyostelium purp... [more]
UPI000644D0FD4.090e-3847.37hypothetical protein n=1 Tax=Acytostelium subglobo... [more]
A0A8J4Q4S1_9MYCE2.080e-3644.90Uncharacterized protein n=1 Tax=Polysphondylium vi... [more]
Q55FL0_DICDI6.020e-3645.21Uncharacterized protein n=1 Tax=Dictyostelium disc... [more]
F4Q353_CAVFA5.360e-3445.27Transmembrane protein n=1 Tax=Cavenderia fascicula... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig106127contigM-pyrifera_M_contig106127:3..482 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score135.6
Seed ortholog evalue2e-29
Seed eggNOG ortholog5786.XP_003283909.1
KEGG koko:K13350
KEGG Pathwayko04146,map04146
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Tim17/Tim22/Tim23/Pmp24 family
EggNOG OGs295P6@1,2RCMG@2759,3XB52@554915
COG Functional cat.S
Best tax levelAmoebozoa
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Exons1
Model size480
Cds size459
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815571.095628-UTR-M-pyrifera_M_contig106127:2..231622815571.095628-UTR-M-pyrifera_M_contig106127:2..23Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig106127 3..23 +
1692277468.8338866-UTR-M-pyrifera_M_contig106127:2..231692277468.8338866-UTR-M-pyrifera_M_contig106127:2..23Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig106127 3..23 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815571.1107283-CDS-M-pyrifera_M_contig106127:23..4821622815571.1107283-CDS-M-pyrifera_M_contig106127:23..482Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig106127 24..482 +
1692277468.8426938-CDS-M-pyrifera_M_contig106127:23..4821692277468.8426938-CDS-M-pyrifera_M_contig106127:23..482Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig106127 24..482 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig106127.1324.1prot_M-pyrifera_M_contig106127.1324.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig106127 24..482 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig106127.1324.1

>prot_M-pyrifera_M_contig106127.1324.1 ID=prot_M-pyrifera_M_contig106127.1324.1|Name=mRNA_M-pyrifera_M_contig106127.1324.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=153bp
MRNGVECWIAGLVGGYVGFGESKGISGAVNNQIVLYLFARGIQGLFVTAV
DKGVLPPAMDIRKGRGFRCLAAFSLALILYLTDYQAHNLSRGFMATMDNL
YYDSNEGPMLPPANFAPFVAVVMLSLLAPLAPSLSLDNLLSFVDRIGPHR
KR*
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mRNA from alignment at M-pyrifera_M_contig106127:3..482+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig106127.1324.1 ID=mRNA_M-pyrifera_M_contig106127.1324.1|Name=mRNA_M-pyrifera_M_contig106127.1324.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=480bp|location=Sequence derived from alignment at M-pyrifera_M_contig106127:3..482+ (Macrocystis pyrifera P11B4 male)
TTTGCCCTGCGCCACCTAGGCATGCGCAACGGCGTCGAGTGCTGGATCGC AGGCCTCGTCGGAGGCTACGTGGGCTTTGGCGAGAGCAAGGGCATCAGCG GCGCGGTCAACAACCAGATTGTGCTCTATCTCTTCGCACGCGGCATCCAG GGCCTCTTCGTGACGGCGGTGGACAAGGGCGTGCTGCCGCCTGCCATGGA CATCCGCAAGGGCCGCGGCTTCCGCTGCCTGGCTGCCTTCTCGCTGGCCC TCATCCTCTACCTGACCGACTACCAGGCGCACAACCTGAGCCGCGGCTTC ATGGCCACCATGGACAACCTCTACTACGACAGCAACGAGGGGCCCATGCT GCCGCCGGCCAACTTCGCGCCCTTCGTCGCAGTCGTTATGCTCTCGCTGC TGGCGCCGCTCGCGCCCTCGCTGAGCCTCGACAACCTGCTCTCCTTTGTC GACCGCATTGGCCCTCACCGCAAGCGCTAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig106127:3..482+

>mRNA_M-pyrifera_M_contig106127.1324.1 ID=mRNA_M-pyrifera_M_contig106127.1324.1|Name=mRNA_M-pyrifera_M_contig106127.1324.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=918bp|location=Sequence derived from alignment at M-pyrifera_M_contig106127:3..482+ (Macrocystis pyrifera P11B4 male)
ATGCGCAACGGCGTCGAGTGCTGGATCGCAGGCCTCGTCGGAGGCTACGT
GGGCTTTGGCGAGAGCAAGGGCATCAGCGGCGCGGTCAACAACCAGATTG
TGCTCTATCTCTTCGCACGCGGCATCCAGGGCCTCTTCGTGACGGCGGTG
GACAAGGGCGTGCTGCCGCCTGCCATGGACATCCGCAAGGGCCGCGGCTT
CCGCTGCCTGGCTGCCTTCTCGCTGGCCCTCATCCTCTACCTGACCGACT
ACCAGGCGCACAACCTGAGCCGCGGCTTCATGGCCACCATGGACAACCTC
TACTACGACAGCAACGAGGGGCCCATGCTGCCGCCGGCCAACTTCGCGCC
CTTCGTCGCAGTCGTTATGCTCTCGCTGCTGGCGCCGCTCGCGCCCTCGC
TGAGCCTCGACAACCTGCTCTCCTTTGTCGACCGCATTGGCCCTCACCGC
AAGCGCTAGATGCGCAACGGCGTCGAGTGCTGGATCGCAGGCCTCGTCGG
AGGCTACGTGGGCTTTGGCGAGAGCAAGGGCATCAGCGGCGCGGTCAACA
ACCAGATTGTGCTCTATCTCTTCGCACGCGGCATCCAGGGCCTCTTCGTG
ACGGCGGTGGACAAGGGCGTGCTGCCGCCTGCCATGGACATCCGCAAGGG
CCGCGGCTTCCGCTGCCTGGCTGCCTTCTCGCTGGCCCTCATCCTCTACC
TGACCGACTACCAGGCGCACAACCTGAGCCGCGGCTTCATGGCCACCATG
GACAACCTCTACTACGACAGCAACGAGGGGCCCATGCTGCCGCCGGCCAA
CTTCGCGCCCTTCGTCGCAGTCGTTATGCTCTCGCTGCTGGCGCCGCTCG
CGCCCTCGCTGAGCCTCGACAACCTGCTCTCCTTTGTCGACCGCATTGGC
CCTCACCGCAAGCGCTAG
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