mRNA_M-pyrifera_M_contig106125.1323.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig106125.1323.1
Unique NamemRNA_M-pyrifera_M_contig106125.1323.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig106125.1323.1 vs. uniprot
Match: A0A496B4D1_9BACT (Uncharacterized protein n=1 Tax=Candidatus Poribacteria bacterium TaxID=2026781 RepID=A0A496B4D1_9BACT)

HSP 1 Score: 58.5 bits (140), Expect = 4.530e-7
Identity = 27/72 (37.50%), Postives = 47/72 (65.28%), Query Frame = 1
Query:   73 HPGDISAMAISPNGELLATTCSDNHLRIWNLSTAKLLKKIS--VGSPTTVAFAQGDDTIVTGDDSGNIQLWN 282
            H G ++++A SP+G++LA+  +D  +R+W+L+T KLL   S      + +AFA+ DD +V+G   G + +WN
Sbjct:  269 HAGTVTSVAFSPSGKILASGSADQRVRLWDLTTGKLLHTFSNHTSKISALAFAR-DDVLVSGSSDGTVFIWN 339          
BLAST of mRNA_M-pyrifera_M_contig106125.1323.1 vs. uniprot
Match: A0A370TR88_9HELO (Uncharacterized protein n=1 Tax=Venustampulla echinocandica TaxID=2656787 RepID=A0A370TR88_9HELO)

HSP 1 Score: 57.8 bits (138), Expect = 8.200e-7
Identity = 36/138 (26.09%), Postives = 69/138 (50.00%), Query Frame = 1
Query:   22 ELTDWRRLCPIIEHVWKHPGDISAMAISPNGELLATTCSDNHLRIWNLSTAKLLKKISVGS-PTTVAFAQGDDTIVTGDDSGNIQLWNATDYKESFEFTGVCNSVNSISVDQTGERLAVAGSNDKIAILDLSLRKAVA 432
            E + W     I++      G++ A+A+S +G+ LA+T  D  + +W+L+  K+ +  + GS    +  ++      +G ++G + ++N    K  +   G+   V +I+    G RLA AG    IA+ D+S  + VA
Sbjct:  117 ETSQWAEAGKIVDQ--NKAGEVWAIALSEDGQFLASTTYDGRINVWDLAGGKIREYETKGSFGLCIDISRDGKYTASGHENGGVYIFNNDMGKLLYSLPGLVKPVRTIAFSPAGTRLAAAGDARVIALYDVSHGEQVA 252          
BLAST of mRNA_M-pyrifera_M_contig106125.1323.1 vs. uniprot
Match: UPI001908DC7B (WD40-repeat-containing domain protein n=1 Tax=Cantharellus anzutake TaxID=1750568 RepID=UPI001908DC7B)

HSP 1 Score: 57.0 bits (136), Expect = 1.920e-6
Identity = 34/113 (30.09%), Postives = 57/113 (50.44%), Query Frame = 1
Query:   73 HPGDISAMAISPNGELLATTCSDNHLRIWNLSTAKLLKKISVGSPTTVAFAQGDDTIVTG--DDSGNIQLWNATDYK-ESFEFTGVCNSVNSISVDQTGERLAVAGSNDKIAI 402
            HPG +S++A S +G+ + +TC +N + IWN +   L + + + S    A    D T +    +D+  I ++ A D   +     G  N VNS+S    G +LA A S+  + I
Sbjct:  234 HPGPVSSVAFSHDGDRIISTCRNNQIWIWNAAVGNLARTLDLDSTCIFAVFSPDGTQIACALEDNTKIYIFGANDMPGQPLRLHGHTNRVNSLSFSPYGFKLASASSDGTVRI 346          
BLAST of mRNA_M-pyrifera_M_contig106125.1323.1 vs. uniprot
Match: A0A0D0BEI6_9AGAM (Uncharacterized protein (Fragment) n=1 Tax=Suillus luteus UH-Slu-Lm8-n1 TaxID=930992 RepID=A0A0D0BEI6_9AGAM)

HSP 1 Score: 55.5 bits (132), Expect = 2.590e-6
Identity = 36/113 (31.86%), Postives = 58/113 (51.33%), Query Frame = 1
Query:   73 HPGDISAMAISPNGELLATTCSDNHLRIWNLSTAKLLKKISVGSPTTV---AFAQGDDTIVTGDDSGNIQLWNATDYKESFEFTGV---CNSVNSISVDQTGERLAVAGSNDK 393
            H  +ISA+A+ P+ + + T   D  LR+W+L T  +LKK+  G  T+V   A A+    I +GD+SG +  W+  +  ES     +    + ++S+     G  LA   S DK
Sbjct:    7 HQANISAVAVFPDRQRIVTGSDDKMLRLWDLKTGTMLKKME-GHQTSVNALAVARNGTLIASGDESGEVIAWHG-ETGESLTLAVIKAHSSGISSLDFSPDGSVLATGSSEDK 117          
BLAST of mRNA_M-pyrifera_M_contig106125.1323.1 vs. uniprot
Match: A0A7C8MD89_9PLEO (WD40-repeat-containing domain protein n=1 Tax=Massariosphaeria phaeospora TaxID=100035 RepID=A0A7C8MD89_9PLEO)

HSP 1 Score: 55.8 bits (133), Expect = 3.630e-6
Identity = 39/144 (27.08%), Postives = 74/144 (51.39%), Query Frame = 1
Query:   22 ELTDWRRLCPIIEHVWKHPGDISAMAISPNGELLATTCSDNHLRIWNLSTAKLLKKI----SVGS-PTTVAFAQGDDTIVTGDDSGNIQLWNATDYKESFEFTGVCNSVNSISVDQTGERLAVAGSNDKIAILDLSLRKAVAEF 438
            E  +WR    I++     PGD+ A+A+S +G+ LA++  +  + +W+L+ A+   KI    + GS    V  +Q      +G ++G+I ++N    + S    G+ + + ++S     + LA AG    IA+ D++  + VA F
Sbjct:   90 ESGEWRLEGEIVDQ--NKPGDVWAIALSADGQYLASSSINGKVNVWSLNKAEGFPKIREYETKGSFGLCVDLSQDGRFTASGHENGSIYVFNNDTGRLSHSLAGLVSPIRTVSFSPASKLLAAAGDARIIALYDVNSGEQVANF 231          
BLAST of mRNA_M-pyrifera_M_contig106125.1323.1 vs. uniprot
Match: A0A367RZK9_NOSPU (Uncharacterized protein n=1 Tax=Nostoc punctiforme NIES-2108 TaxID=1356359 RepID=A0A367RZK9_NOSPU)

HSP 1 Score: 53.1 bits (126), Expect = 7.610e-6
Identity = 29/84 (34.52%), Postives = 47/84 (55.95%), Query Frame = 1
Query:   34 WR-RLCPIIEHVWKHPGDISAMAISPNGELLATTCSDNHLRIWNLSTAKLLKKISVGSPT-TVAFAQGDDTIVTGDDSGNIQLW 279
            W+ R   +I ++  H  DI+A+ ISPNG++LAT   D  +RI NL T +L++       T  ++F+    T+  G   G I++W
Sbjct:   59 WKLRTGELIRNLEGHSEDITAITISPNGQILATGSVDGTIRITNLGTRELIRVFKDMKETRALSFSNDSRTLAAGGTDGKIKIW 142          
BLAST of mRNA_M-pyrifera_M_contig106125.1323.1 vs. uniprot
Match: A0A2V2SKE7_9BACT (Non-specific serine/threonine protein kinase n=1 Tax=Verrucomicrobia bacterium TaxID=2026799 RepID=A0A2V2SKE7_9BACT)

HSP 1 Score: 54.7 bits (130), Expect = 1.250e-5
Identity = 25/82 (30.49%), Postives = 47/82 (57.32%), Query Frame = 1
Query:   73 HPGDISAMAISPNGELLATTCSDNHLRIWNLSTA--KLLKKISVGSPTTVAFAQGDDTIVTGDDSGNIQLWNATDYKESFEF 312
            HPG ++ M  +P GELLATTC +N + +W+  T   + + +   G+P  V F+   + +V+  + G ++ WN    ++ F++
Sbjct:  622 HPGSVADMRWNPAGELLATTCGNNEIYLWDADTGVQQTVLRGHEGAPVRVDFSFDGEFLVSRGNEGMLRFWNMASGEQLFKY 703          
BLAST of mRNA_M-pyrifera_M_contig106125.1323.1 vs. uniprot
Match: A0A0M1JKR6_9CYAN (Uncharacterized protein n=2 Tax=Planktothricoides TaxID=132607 RepID=A0A0M1JKR6_9CYAN)

HSP 1 Score: 54.3 bits (129), Expect = 1.310e-5
Identity = 29/72 (40.28%), Postives = 43/72 (59.72%), Query Frame = 1
Query:   70 KHPGDISAMAISPNGELLATTCSDNHLRIWNLSTAKLLKKIS--VGSPTTVAFAQGDDTIVTGDDSGNIQLW 279
            +H G I  +AISP+G  LA+   D  L++WNL + +LL +IS  V +   VAF+     + TG D+  IQ+W
Sbjct:  256 EHLGPIHTLAISPDGNTLASASRDG-LKLWNLRSGELLHRISPTVDAVQAVAFSPDGTMLATGGDNNTIQIW 326          
BLAST of mRNA_M-pyrifera_M_contig106125.1323.1 vs. uniprot
Match: A0A0F4Z0N3_TALEM (Meiotic recombination protein Ski8/Rec14 n=1 Tax=Rasamsonia emersonii CBS 393.64 TaxID=1408163 RepID=A0A0F4Z0N3_TALEM)

HSP 1 Score: 54.3 bits (129), Expect = 1.490e-5
Identity = 39/136 (28.68%), Postives = 65/136 (47.79%), Query Frame = 1
Query:   67 WKHPGDISA---------MAISPNGELLATTCSDNHLRIWNLST-----AKLLKKISVGSPTTVAFAQGDDTIVTGDDSGNIQLWNATDYKESFEFTGVCNSVNSISVDQTGERLAVAGSNDKIAILDLSLRKAVA 432
            W   GDISA         +A+S +G+ LA T  D H+++W+LS           K S G  T +  +     I +G ++G+I +++    +  F  +G+   V +I+    G+ LA AG +  I + D S  + VA
Sbjct:  248 WVEDGDISAGVGKSEVWAIALSEDGQTLAGTTHDGHIKVWDLSANGEEIRDFETKGSFG--TCIDMSADGQYIASGHENGSIYIFSNETGRMPFSLSGLVKPVRAIAFSPGGKLLAAAGDSRVIVLYDTSSGEQVA 381          
BLAST of mRNA_M-pyrifera_M_contig106125.1323.1 vs. uniprot
Match: A2QAM5_ASPNC (Aspergillus niger contig An01c0350, genomic contig n=1 Tax=Aspergillus niger (strain CBS 513.88 / FGSC A1513) TaxID=425011 RepID=A2QAM5_ASPNC)

HSP 1 Score: 53.9 bits (128), Expect = 2.190e-5
Identity = 24/73 (32.88%), Postives = 39/73 (53.42%), Query Frame = 1
Query:   73 HPGDISAMAISPNGELLATTCSDNHLRIWNLSTAKLLKKISVGSPTTVAFAQGDDTIVTG----DDSGNIQLW 279
            H   + +MA+SPNGELLAT C+   +R+WN + A L   I  G P  ++  +   T+++        G ++ W
Sbjct:  289 HESKLLSMALSPNGELLATLCTKGTVRVWNTTDATLDHSIEAGDPKRISTGKDSKTLISSGLDQQQKGKVKWW 361          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig106125.1323.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 21
Match NameE-valueIdentityDescription
A0A496B4D1_9BACT4.530e-737.50Uncharacterized protein n=1 Tax=Candidatus Poribac... [more]
A0A370TR88_9HELO8.200e-726.09Uncharacterized protein n=1 Tax=Venustampulla echi... [more]
UPI001908DC7B1.920e-630.09WD40-repeat-containing domain protein n=1 Tax=Cant... [more]
A0A0D0BEI6_9AGAM2.590e-631.86Uncharacterized protein (Fragment) n=1 Tax=Suillus... [more]
A0A7C8MD89_9PLEO3.630e-627.08WD40-repeat-containing domain protein n=1 Tax=Mass... [more]
A0A367RZK9_NOSPU7.610e-634.52Uncharacterized protein n=1 Tax=Nostoc punctiforme... [more]
A0A2V2SKE7_9BACT1.250e-530.49Non-specific serine/threonine protein kinase n=1 T... [more]
A0A0M1JKR6_9CYAN1.310e-540.28Uncharacterized protein n=2 Tax=Planktothricoides ... [more]
A0A0F4Z0N3_TALEM1.490e-528.68Meiotic recombination protein Ski8/Rec14 n=1 Tax=R... [more]
A2QAM5_ASPNC2.190e-532.88Aspergillus niger contig An01c0350, genomic contig... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig106125contigM-pyrifera_M_contig106125:74..565 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score62.4
Seed ortholog evalue2.3e-07
Seed eggNOG ortholog245174.XP_009268427.1
Preferred nameDIP2
KEGG koko:K14556
KEGG Pathwayko03008,map03008
Hectar predicted targeting categoryother localisation
GOsGO:0000447,GO:0000460,GO:0000462,GO:0000466,GO:0000469,GO:0000472,GO:0000478,GO:0000479,GO:0000480,GO:0000966,GO:0000967,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0022613,GO:0030490,GO:0030515,GO:0030684,GO:0030686,GO:0031974,GO:0031981,GO:0032040,GO:0032991,GO:0034388,GO:0034470,GO:0034471,GO:0034641,GO:0034660,GO:0042254,GO:0042274,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044452,GO:0044464,GO:0046483,GO:0070013,GO:0071704,GO:0071840,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0097159,GO:1901360,GO:1901363,GO:1990904
EggNOG free text desc.wd-repeat-containing protein
EggNOG OGs38HWQ@33154,3NWQD@4751,3UZ7X@5204,KOG0306@1,KOG0306@2759
COG Functional cat.A
Best tax levelBasidiomycota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03009
Exons1
Model size492
Cds size492
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815571.0616798-CDS-M-pyrifera_M_contig106125:73..5651622815571.0616798-CDS-M-pyrifera_M_contig106125:73..565Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig106125 74..565 +
1692277468.8238714-CDS-M-pyrifera_M_contig106125:73..5651692277468.8238714-CDS-M-pyrifera_M_contig106125:73..565Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig106125 74..565 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig106125.1323.1prot_M-pyrifera_M_contig106125.1323.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig106125 74..565 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig106125.1323.1

>prot_M-pyrifera_M_contig106125.1323.1 ID=prot_M-pyrifera_M_contig106125.1323.1|Name=mRNA_M-pyrifera_M_contig106125.1323.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=164bp
MRTALRRELTDWRRLCPIIEHVWKHPGDISAMAISPNGELLATTCSDNHL
RIWNLSTAKLLKKISVGSPTTVAFAQGDDTIVTGDDSGNIQLWNATDYKE
SFEFTGVCNSVNSISVDQTGERLAVAGSNDKIAILDLSLRKAVAEFQFPG
RANVVAFHPQKDQL
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mRNA from alignment at M-pyrifera_M_contig106125:74..565+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig106125.1323.1 ID=mRNA_M-pyrifera_M_contig106125.1323.1|Name=mRNA_M-pyrifera_M_contig106125.1323.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=492bp|location=Sequence derived from alignment at M-pyrifera_M_contig106125:74..565+ (Macrocystis pyrifera P11B4 male)
ATGCGCACCGCCCTGCGACGGGAACTCACCGATTGGCGGCGATTGTGCCC AATTATTGAACACGTTTGGAAACACCCCGGCGACATTTCAGCAATGGCGA TTTCGCCCAATGGCGAACTTTTGGCGACAACCTGCAGCGACAACCATCTT CGCATTTGGAATTTAAGCACGGCGAAGTTGCTGAAGAAGATTTCTGTTGG TTCACCAACAACCGTTGCGTTTGCCCAGGGCGACGACACAATCGTAACGG GCGACGATAGCGGCAACATTCAACTGTGGAACGCAACCGACTACAAAGAA TCGTTTGAATTCACGGGTGTGTGCAACAGCGTAAATTCGATTTCCGTCGA TCAAACGGGTGAGCGTCTTGCCGTCGCCGGCAGCAACGACAAGATTGCCA TTCTCGACTTGTCGTTGCGAAAGGCGGTCGCCGAATTTCAGTTTCCCGGG CGCGCTAACGTCGTTGCGTTTCATCCGCAAAAAGATCAGTTA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig106125:74..565+

>mRNA_M-pyrifera_M_contig106125.1323.1 ID=mRNA_M-pyrifera_M_contig106125.1323.1|Name=mRNA_M-pyrifera_M_contig106125.1323.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=984bp|location=Sequence derived from alignment at M-pyrifera_M_contig106125:74..565+ (Macrocystis pyrifera P11B4 male)
ATGCGCACCGCCCTGCGACGGGAACTCACCGATTGGCGGCGATTGTGCCC
AATTATTGAACACGTTTGGAAACACCCCGGCGACATTTCAGCAATGGCGA
TTTCGCCCAATGGCGAACTTTTGGCGACAACCTGCAGCGACAACCATCTT
CGCATTTGGAATTTAAGCACGGCGAAGTTGCTGAAGAAGATTTCTGTTGG
TTCACCAACAACCGTTGCGTTTGCCCAGGGCGACGACACAATCGTAACGG
GCGACGATAGCGGCAACATTCAACTGTGGAACGCAACCGACTACAAAGAA
TCGTTTGAATTCACGGGTGTGTGCAACAGCGTAAATTCGATTTCCGTCGA
TCAAACGGGTGAGCGTCTTGCCGTCGCCGGCAGCAACGACAAGATTGCCA
TTCTCGACTTGTCGTTGCGAAAGGCGGTCGCCGAATTTCAGTTTCCCGGG
CGCGCTAACGTCGTTGCGTTTCATCCGCAAAAAGATCAGTTAATGCGCAC
CGCCCTGCGACGGGAACTCACCGATTGGCGGCGATTGTGCCCAATTATTG
AACACGTTTGGAAACACCCCGGCGACATTTCAGCAATGGCGATTTCGCCC
AATGGCGAACTTTTGGCGACAACCTGCAGCGACAACCATCTTCGCATTTG
GAATTTAAGCACGGCGAAGTTGCTGAAGAAGATTTCTGTTGGTTCACCAA
CAACCGTTGCGTTTGCCCAGGGCGACGACACAATCGTAACGGGCGACGAT
AGCGGCAACATTCAACTGTGGAACGCAACCGACTACAAAGAATCGTTTGA
ATTCACGGGTGTGTGCAACAGCGTAAATTCGATTTCCGTCGATCAAACGG
GTGAGCGTCTTGCCGTCGCCGGCAGCAACGACAAGATTGCCATTCTCGAC
TTGTCGTTGCGAAAGGCGGTCGCCGAATTTCAGTTTCCCGGGCGCGCTAA
CGTCGTTGCGTTTCATCCGCAAAAAGATCAGTTA
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