mRNA_M-pyrifera_M_contig106115.1322.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig106115.1322.1
Unique NamemRNA_M-pyrifera_M_contig106115.1322.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig106115.1322.1 vs. uniprot
Match: D7G5D8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5D8_ECTSI)

HSP 1 Score: 80.1 bits (196), Expect = 1.390e-16
Identity = 40/44 (90.91%), Postives = 42/44 (95.45%), Query Frame = 1 
Query:    1 QVLGKGLTAAGNRVAVISIDPSSLRTGGSILGDKTRMHELSRDP 132
            +VLGK LT+AGNRVAVISIDPSSLRTGGSILGDKTRM ELSRDP
Sbjct:  272 EVLGKRLTSAGNRVAVISIDPSSLRTGGSILGDKTRMDELSRDP 315
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BLAST of mRNA_M-pyrifera_M_contig106115.1322.1 vs. uniprot
Match: A0A850GAX2_9DELT (Methylmalonyl Co-A mutase-associated GTPase MeaB n=1 Tax=Pseudenhygromyxa sp. WMMC2535 TaxID=2712867 RepID=A0A850GAX2_9DELT)

HSP 1 Score: 70.9 bits (172), Expect = 2.640e-13
Identity = 33/44 (75.00%), Postives = 39/44 (88.64%), Query Frame = 1 
Query:    1 QVLGKGLTAAGNRVAVISIDPSSLRTGGSILGDKTRMHELSRDP 132
            + LGK LTAAG RVAV+++DPSS R+GGSILGDKTRM EL+RDP
Sbjct:   73 EALGKQLTAAGTRVAVLAVDPSSTRSGGSILGDKTRMQELARDP 116
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BLAST of mRNA_M-pyrifera_M_contig106115.1322.1 vs. uniprot
Match: A0A1Z5LFC2_ORNMO (Uncharacterized protein (Fragment) n=2 Tax=Ornithodoros moubata TaxID=6938 RepID=A0A1Z5LFC2_ORNMO)

HSP 1 Score: 70.5 bits (171), Expect = 4.700e-13
Identity = 33/44 (75.00%), Postives = 39/44 (88.64%), Query Frame = 1 
Query:    1 QVLGKGLTAAGNRVAVISIDPSSLRTGGSILGDKTRMHELSRDP 132
            + LGK LTAAGNRVAV+++DPSS  TGGS+LGDKTRM EL+RDP
Sbjct:  120 ETLGKFLTAAGNRVAVLTVDPSSATTGGSLLGDKTRMPELTRDP 163
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BLAST of mRNA_M-pyrifera_M_contig106115.1322.1 vs. uniprot
Match: A0A6P8HVX9_ACTTE (methylmalonic aciduria type A protein, mitochondrial-like n=1 Tax=Actinia tenebrosa TaxID=6105 RepID=A0A6P8HVX9_ACTTE)

HSP 1 Score: 69.7 bits (169), Expect = 8.380e-13
Identity = 32/44 (72.73%), Postives = 40/44 (90.91%), Query Frame = 1 
Query:    1 QVLGKGLTAAGNRVAVISIDPSSLRTGGSILGDKTRMHELSRDP 132
            +V GK LT+ G++VAV+++DPSSLRTGGS+LGDKTRM ELSRDP
Sbjct:  119 EVFGKMLTSQGHKVAVLAVDPSSLRTGGSLLGDKTRMTELSRDP 162
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BLAST of mRNA_M-pyrifera_M_contig106115.1322.1 vs. uniprot
Match: UPI001F11845E (methylmalonyl Co-A mutase-associated GTPase MeaB n=1 Tax=Sneathiella chinensis TaxID=349750 RepID=UPI001F11845E)

HSP 1 Score: 68.9 bits (167), Expect = 1.270e-12
Identity = 33/44 (75.00%), Postives = 38/44 (86.36%), Query Frame = 1 
Query:    1 QVLGKGLTAAGNRVAVISIDPSSLRTGGSILGDKTRMHELSRDP 132
            +  GK LTA G++VAV++IDPSS RTGGSILGDKTRM ELSRDP
Sbjct:   63 EAFGKFLTAQGHKVAVLTIDPSSKRTGGSILGDKTRMEELSRDP 106
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BLAST of mRNA_M-pyrifera_M_contig106115.1322.1 vs. uniprot
Match: UPI001CA5A411 (methylmalonyl Co-A mutase-associated GTPase MeaB n=1 Tax=Sneathiella aquimaris TaxID=2599305 RepID=UPI001CA5A411)

HSP 1 Score: 68.9 bits (167), Expect = 1.300e-12
Identity = 33/44 (75.00%), Postives = 38/44 (86.36%), Query Frame = 1 
Query:    1 QVLGKGLTAAGNRVAVISIDPSSLRTGGSILGDKTRMHELSRDP 132
            +  GK LTA G++VAV++IDPSS RTGGSILGDKTRM ELSRDP
Sbjct:   63 EAFGKFLTAKGHKVAVLTIDPSSKRTGGSILGDKTRMEELSRDP 106
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BLAST of mRNA_M-pyrifera_M_contig106115.1322.1 vs. uniprot
Match: A0A2E2YCF1_9PROT (Methylmalonyl Co-A mutase-associated GTPase MeaB n=2 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2E2YCF1_9PROT)

HSP 1 Score: 68.6 bits (166), Expect = 1.850e-12
Identity = 31/44 (70.45%), Postives = 39/44 (88.64%), Query Frame = 1 
Query:    1 QVLGKGLTAAGNRVAVISIDPSSLRTGGSILGDKTRMHELSRDP 132
            + LGK LT+ G+RVAV+++DP+S RTGGSILGDKTRM EL+RDP
Sbjct:   74 ETLGKRLTSMGHRVAVLAVDPTSTRTGGSILGDKTRMQELARDP 117
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BLAST of mRNA_M-pyrifera_M_contig106115.1322.1 vs. uniprot
Match: A6G1G9_9DELT (Arginine/ornithine transport system ATPase n=1 Tax=Plesiocystis pacifica SIR-1 TaxID=391625 RepID=A6G1G9_9DELT)

HSP 1 Score: 68.2 bits (165), Expect = 2.520e-12
Identity = 31/44 (70.45%), Postives = 38/44 (86.36%), Query Frame = 1 
Query:    1 QVLGKGLTAAGNRVAVISIDPSSLRTGGSILGDKTRMHELSRDP 132
            + LG+ LT AG RVAV+++DPSS R+GGSILGDKTRM EL+RDP
Sbjct:   72 ETLGRQLTGAGTRVAVLAVDPSSTRSGGSILGDKTRMQELARDP 115
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BLAST of mRNA_M-pyrifera_M_contig106115.1322.1 vs. uniprot
Match: A0A4Q3SN25_9CAUL (Methylmalonyl Co-A mutase-associated GTPase MeaB (Fragment) n=1 Tax=Caulobacteraceae bacterium TaxID=1978230 RepID=A0A4Q3SN25_9CAUL)

HSP 1 Score: 65.1 bits (157), Expect = 2.550e-12
Identity = 32/44 (72.73%), Postives = 37/44 (84.09%), Query Frame = 1 
Query:    1 QVLGKGLTAAGNRVAVISIDPSSLRTGGSILGDKTRMHELSRDP 132
            + LG  LTAAG++VAV++IDPSS RTGGSILGDKTRM  LS DP
Sbjct:   68 EALGLNLTAAGHKVAVLAIDPSSGRTGGSILGDKTRMERLSVDP 111
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BLAST of mRNA_M-pyrifera_M_contig106115.1322.1 vs. uniprot
Match: A0A293LCR2_ORNER (Methylmalonyl-CoA mutase (Fragment) n=1 Tax=Ornithodoros erraticus TaxID=265619 RepID=A0A293LCR2_ORNER)

HSP 1 Score: 67.8 bits (164), Expect = 2.800e-12
Identity = 31/44 (70.45%), Postives = 39/44 (88.64%), Query Frame = 1 
Query:    1 QVLGKGLTAAGNRVAVISIDPSSLRTGGSILGDKTRMHELSRDP 132
            + LGK LTAAGN+VAV+++DPSS  +GGS+LGDKTRM EL+RDP
Sbjct:   36 ETLGKFLTAAGNKVAVLTVDPSSATSGGSLLGDKTRMPELTRDP 79
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig106115.1322.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G5D8_ECTSI1.390e-1690.91Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A850GAX2_9DELT2.640e-1375.00Methylmalonyl Co-A mutase-associated GTPase MeaB n... [more]
A0A1Z5LFC2_ORNMO4.700e-1375.00Uncharacterized protein (Fragment) n=2 Tax=Ornitho... [more]
A0A6P8HVX9_ACTTE8.380e-1372.73methylmalonic aciduria type A protein, mitochondri... [more]
UPI001F11845E1.270e-1275.00methylmalonyl Co-A mutase-associated GTPase MeaB n... [more]
UPI001CA5A4111.300e-1275.00methylmalonyl Co-A mutase-associated GTPase MeaB n... [more]
A0A2E2YCF1_9PROT1.850e-1270.45Methylmalonyl Co-A mutase-associated GTPase MeaB n... [more]
A6G1G9_9DELT2.520e-1270.45Arginine/ornithine transport system ATPase n=1 Tax... [more]
A0A4Q3SN25_9CAUL2.550e-1272.73Methylmalonyl Co-A mutase-associated GTPase MeaB (... [more]
A0A293LCR2_ORNER2.800e-1270.45Methylmalonyl-CoA mutase (Fragment) n=1 Tax=Ornith... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig106115contigM-pyrifera_M_contig106115:296..427 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score80.1
Seed ortholog evalue2.8e-13
Seed eggNOG ortholog2880.D7G5D8
Preferred nameMMAA
KEGG koko:K07588
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000166,GO:0001882,GO:0001883,GO:0003674,GO:0003824,GO:0003924,GO:0005488,GO:0005515,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0006725,GO:0006766,GO:0006767,GO:0006807,GO:0008150,GO:0008152,GO:0009235,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017076,GO:0017111,GO:0017144,GO:0019001,GO:0031974,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0033013,GO:0035639,GO:0036094,GO:0042802,GO:0042803,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044281,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0046983,GO:0051186,GO:0070013,GO:0071704,GO:0097159,GO:0097367,GO:1901265,GO:1901360,GO:1901363,GO:1901564
EggNOG free text desc.cobalamin biosynthetic process
EggNOG OGs2QR2W@2759,COG1703@1
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Exons1
Model size132
Cds size132
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815571.0221891-CDS-M-pyrifera_M_contig106115:295..4271622815571.0221891-CDS-M-pyrifera_M_contig106115:295..427Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig106115 296..427 +
1692277468.813798-CDS-M-pyrifera_M_contig106115:295..4271692277468.813798-CDS-M-pyrifera_M_contig106115:295..427Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig106115 296..427 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig106115.1322.1prot_M-pyrifera_M_contig106115.1322.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig106115 296..427 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig106115.1322.1

>prot_M-pyrifera_M_contig106115.1322.1 ID=prot_M-pyrifera_M_contig106115.1322.1|Name=mRNA_M-pyrifera_M_contig106115.1322.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=44bp
QVLGKGLTAAGNRVAVISIDPSSLRTGGSILGDKTRMHELSRDP
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mRNA from alignment at M-pyrifera_M_contig106115:296..427+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig106115.1322.1 ID=mRNA_M-pyrifera_M_contig106115.1322.1|Name=mRNA_M-pyrifera_M_contig106115.1322.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=132bp|location=Sequence derived from alignment at M-pyrifera_M_contig106115:296..427+ (Macrocystis pyrifera P11B4 male)
CAGGTTCTGGGCAAGGGCCTCACCGCTGCGGGAAACCGAGTGGCGGTAAT
TTCGATCGACCCGTCCAGTCTTCGCACGGGCGGCTCCATCCTGGGGGACA
AGACGAGAATGCACGAGCTCTCTAGAGACCCC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig106115:296..427+

>mRNA_M-pyrifera_M_contig106115.1322.1 ID=mRNA_M-pyrifera_M_contig106115.1322.1|Name=mRNA_M-pyrifera_M_contig106115.1322.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=264bp|location=Sequence derived from alignment at M-pyrifera_M_contig106115:296..427+ (Macrocystis pyrifera P11B4 male)
CAGGTTCTGGGCAAGGGCCTCACCGCTGCGGGAAACCGAGTGGCGGTAAT
TTCGATCGACCCGTCCAGTCTTCGCACGGGCGGCTCCATCCTGGGGGACA
AGACGAGAATGCACGAGCTCTCTAGAGACCCCCAGGTTCTGGGCAAGGGC
CTCACCGCTGCGGGAAACCGAGTGGCGGTAATTTCGATCGACCCGTCCAG
TCTTCGCACGGGCGGCTCCATCCTGGGGGACAAGACGAGAATGCACGAGC
TCTCTAGAGACCCC
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