mRNA_M-pyrifera_M_contig106114.1321.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig106114.1321.1
Unique NamemRNA_M-pyrifera_M_contig106114.1321.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig106114.1321.1 vs. uniprot
Match: D7FPY3_ECTSI (Peroxin-5 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPY3_ECTSI)

HSP 1 Score: 116 bits (291), Expect = 7.400e-29
Identity = 54/58 (93.10%), Postives = 57/58 (98.28%), Query Frame = 1 
Query:    4 QVMQLMLQAQRWDTTDADAHVVLGVLYNVSRDYDSAAEAFRRALEARPNDHSLWNKVG 177
            +VMQLMLQAQRWD TDADAHVVLGVLYNVSRDYDSAAEAFRRA+EARPNDHSLWNK+G
Sbjct:  578 EVMQLMLQAQRWDATDADAHVVLGVLYNVSRDYDSAAEAFRRAIEARPNDHSLWNKLG 635
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BLAST of mRNA_M-pyrifera_M_contig106114.1321.1 vs. uniprot
Match: I2CRE6_NANGC (Peroxin-5 n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=I2CRE6_NANGC)

HSP 1 Score: 85.9 bits (211), Expect = 9.660e-19
Identity = 44/65 (67.69%), Postives = 49/65 (75.38%), Query Frame = 1 
Query:    4 QVMQLMLQAQRWDTT-------DADAHVVLGVLYNVSRDYDSAAEAFRRALEARPNDHSLWNKVG 177
            +V QLMLQAQ WD         DAD  VVLGVLYNVS DYDSAA AFR+AL ARP+D+SLWNK+G
Sbjct:  112 EVTQLMLQAQDWDRATCGPEGQDADVEVVLGVLYNVSHDYDSAAAAFRQALVARPSDYSLWNKLG 176
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BLAST of mRNA_M-pyrifera_M_contig106114.1321.1 vs. uniprot
Match: A0A7S1GFM5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1GFM5_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 5.030e-18
Identity = 38/58 (65.52%), Postives = 48/58 (82.76%), Query Frame = 1 
Query:    4 QVMQLMLQAQRWDTTDADAHVVLGVLYNVSRDYDSAAEAFRRALEARPNDHSLWNKVG 177
            +V QLM++AQ WD TDA+  VVLGVLYNVSRD+DSA  AF  AL+ +P+D+SLWNK+G
Sbjct:  222 EVAQLMVKAQEWDPTDAEVKVVLGVLYNVSRDFDSAIAAFSAALDTKPDDYSLWNKLG 279
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BLAST of mRNA_M-pyrifera_M_contig106114.1321.1 vs. uniprot
Match: K3WYZ0_GLOUD (Peroxin-5 n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WYZ0_GLOUD)

HSP 1 Score: 84.7 bits (208), Expect = 1.240e-17
Identity = 38/65 (58.46%), Postives = 53/65 (81.54%), Query Frame = 1 
Query:    4 QVMQLMLQAQRWDTTDADAHVVLGVLYNVSRDYDSAAEAFRRALEARPNDHSLWNKVGRRVSTTA 198
            +VMQLMLQA+  D +D+D  VVLGVLYNVS+DYD+AA +FR A + RPN++SLWNK+G  ++ ++
Sbjct:  437 EVMQLMLQARAHDPSDSDVQVVLGVLYNVSKDYDAAANSFRMAAQERPNEYSLWNKLGATLANSS 501
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BLAST of mRNA_M-pyrifera_M_contig106114.1321.1 vs. uniprot
Match: A0A024G6X9_9STRA (Uncharacterized protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024G6X9_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 2.970e-17
Identity = 38/65 (58.46%), Postives = 51/65 (78.46%), Query Frame = 1 
Query:    4 QVMQLMLQAQRWDTTDADAHVVLGVLYNVSRDYDSAAEAFRRALEARPNDHSLWNKVGRRVSTTA 198
            QVMQ ML AQ  D+ DAD HVVLGVLY+VS+DYD+A + FR A + RP++HSLWNK+G  ++ ++
Sbjct:  325 QVMQFMLHAQNHDSEDADIHVVLGVLYSVSKDYDAAIQNFRFAAQRRPDEHSLWNKLGATLANSS 389
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BLAST of mRNA_M-pyrifera_M_contig106114.1321.1 vs. uniprot
Match: H3GFX8_PHYRM (Peroxin-5 n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GFX8_PHYRM)

HSP 1 Score: 83.6 bits (205), Expect = 3.210e-17
Identity = 36/65 (55.38%), Postives = 54/65 (83.08%), Query Frame = 1 
Query:    4 QVMQLMLQAQRWDTTDADAHVVLGVLYNVSRDYDSAAEAFRRALEARPNDHSLWNKVGRRVSTTA 198
            +VMQLMLQA+  D +D+D  VVLGVLYNVS+DYD+A E+F+ A ++RP++++LWNK+G  ++ +A
Sbjct:  515 EVMQLMLQARAHDPSDSDVQVVLGVLYNVSKDYDAAVESFKAATDSRPDEYALWNKIGATLANSA 579
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BLAST of mRNA_M-pyrifera_M_contig106114.1321.1 vs. uniprot
Match: A0A3M6VSH2_9STRA (Peroxin-5 n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VSH2_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 4.350e-17
Identity = 36/65 (55.38%), Postives = 53/65 (81.54%), Query Frame = 1 
Query:    4 QVMQLMLQAQRWDTTDADAHVVLGVLYNVSRDYDSAAEAFRRALEARPNDHSLWNKVGRRVSTTA 198
            +VMQLMLQA+  D +D+D  VVLGVLYNVS+DYD+A E+F+ A ++RP+++ LWNK+G  ++ +A
Sbjct:  512 EVMQLMLQARAHDPSDSDVQVVLGVLYNVSKDYDAAVESFKAATDSRPDEYGLWNKIGATLANSA 576
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BLAST of mRNA_M-pyrifera_M_contig106114.1321.1 vs. uniprot
Match: A0A836CKH3_9STRA (Peroxin-5 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKH3_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 4.610e-17
Identity = 41/71 (57.75%), Postives = 47/71 (66.20%), Query Frame = 1 
Query:    4 QVMQLMLQAQRWD-------------TTDADAHVVLGVLYNVSRDYDSAAEAFRRALEARPNDHSLWNKVG 177
            +VMQLM  A++WD             T DAD  VVLGVL+NVSRDYD+A  AFR AL  RP DHSLWNK+G
Sbjct:   81 EVMQLMRSAEQWDFXXXXXXXXXXXXTADADVKVVLGVLFNVSRDYDAAVGAFREALRLRPEDHSLWNKLG 151
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BLAST of mRNA_M-pyrifera_M_contig106114.1321.1 vs. uniprot
Match: A0A3R7ML97_9STRA (Peroxin-5 n=4 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7ML97_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 5.910e-17
Identity = 36/65 (55.38%), Postives = 53/65 (81.54%), Query Frame = 1 
Query:    4 QVMQLMLQAQRWDTTDADAHVVLGVLYNVSRDYDSAAEAFRRALEARPNDHSLWNKVGRRVSTTA 198
            +VMQLMLQA+  D +D+D  VVLGVLYNVS+DYD+A E+F+ A  +RP++++LWNK+G  ++ +A
Sbjct:  456 EVMQLMLQARAHDPSDSDVQVVLGVLYNVSKDYDAAVESFKTATNSRPDEYALWNKIGATLANSA 520
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BLAST of mRNA_M-pyrifera_M_contig106114.1321.1 vs. uniprot
Match: A0A067C1N4_SAPPC (Peroxin-5 n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067C1N4_SAPPC)

HSP 1 Score: 82.4 bits (202), Expect = 8.070e-17
Identity = 38/65 (58.46%), Postives = 50/65 (76.92%), Query Frame = 1 
Query:    4 QVMQLMLQAQRWDTTDADAHVVLGVLYNVSRDYDSAAEAFRRALEARPNDHSLWNKVGRRVSTTA 198
            QVMQLMLQAQ  D  D+D  VVLGVLYNVS+DYD+A   FR A  ARP++++LWNK+G  ++ ++
Sbjct:  448 QVMQLMLQAQSHDPLDSDVQVVLGVLYNVSKDYDAAVRCFRLAASARPDEYALWNKLGATLANSS 512
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig106114.1321.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FPY3_ECTSI7.400e-2993.10Peroxin-5 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FP... [more]
I2CRE6_NANGC9.660e-1967.69Peroxin-5 n=2 Tax=Nannochloropsis gaditana TaxID=7... [more]
A0A7S1GFM5_9STRA5.030e-1865.52Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
K3WYZ0_GLOUD1.240e-1758.46Peroxin-5 n=1 Tax=Globisporangium ultimum (strain ... [more]
A0A024G6X9_9STRA2.970e-1758.46Uncharacterized protein n=1 Tax=Albugo candida Tax... [more]
H3GFX8_PHYRM3.210e-1755.38Peroxin-5 n=1 Tax=Phytophthora ramorum TaxID=16432... [more]
A0A3M6VSH2_9STRA4.350e-1755.38Peroxin-5 n=2 Tax=Peronospora effusa TaxID=542832 ... [more]
A0A836CKH3_9STRA4.610e-1757.75Peroxin-5 n=1 Tax=Tribonema minus TaxID=303371 Rep... [more]
A0A3R7ML97_9STRA5.910e-1755.38Peroxin-5 n=4 Tax=Phytophthora kernoviae TaxID=325... [more]
A0A067C1N4_SAPPC8.070e-1758.46Peroxin-5 n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig106114contigM-pyrifera_M_contig106114:372..569 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score115.2
Seed ortholog evalue1.1e-23
Seed eggNOG ortholog2880.D7FPY3
Preferred namepex5
KEGG koko:K13342
KEGG TC3.A.20.1
KEGG Pathwayko04146,map04146
Hectar predicted targeting categoryother localisation
GOsGO:0000268,GO:0003674,GO:0005048,GO:0005052,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005777,GO:0005778,GO:0005829,GO:0006605,GO:0006625,GO:0006810,GO:0006886,GO:0006996,GO:0007031,GO:0008104,GO:0008150,GO:0009987,GO:0015031,GO:0015833,GO:0015919,GO:0016020,GO:0016043,GO:0016558,GO:0016560,GO:0017038,GO:0031090,GO:0031903,GO:0033036,GO:0033218,GO:0033365,GO:0034613,GO:0042277,GO:0042579,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043574,GO:0044422,GO:0044424,GO:0044438,GO:0044439,GO:0044444,GO:0044446,GO:0044464,GO:0044743,GO:0045184,GO:0046907,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0055085,GO:0065002,GO:0070727,GO:0071702,GO:0071705,GO:0071806,GO:0071840,GO:0072594,GO:0072662,GO:0072663,GO:0098588,GO:0098805
EggNOG free text desc.peroxisome matrix targeting signal-1 binding
EggNOG OGsKOG1125@1,KOG1125@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131
Exons1
Model size198
Cds size189
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815570.9767785-CDS-M-pyrifera_M_contig106114:371..5601622815570.9767785-CDS-M-pyrifera_M_contig106114:371..560Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig106114 372..560 -
1692277468.7961335-CDS-M-pyrifera_M_contig106114:371..5601692277468.7961335-CDS-M-pyrifera_M_contig106114:371..560Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig106114 372..560 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815570.990215-UTR-M-pyrifera_M_contig106114:560..5691622815570.990215-UTR-M-pyrifera_M_contig106114:560..569Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig106114 561..569 -
1692277468.8056867-UTR-M-pyrifera_M_contig106114:560..5691692277468.8056867-UTR-M-pyrifera_M_contig106114:560..569Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig106114 561..569 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig106114.1321.1prot_M-pyrifera_M_contig106114.1321.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig106114 372..560 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig106114.1321.1

>prot_M-pyrifera_M_contig106114.1321.1 ID=prot_M-pyrifera_M_contig106114.1321.1|Name=mRNA_M-pyrifera_M_contig106114.1321.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=63bp
MQLMLQAQRWDTTDADAHVVLGVLYNVSRDYDSAAEAFRRALEARPNDHS
LWNKVGRRVSTTA
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mRNA from alignment at M-pyrifera_M_contig106114:372..569-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig106114.1321.1 ID=mRNA_M-pyrifera_M_contig106114.1321.1|Name=mRNA_M-pyrifera_M_contig106114.1321.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=198bp|location=Sequence derived from alignment at M-pyrifera_M_contig106114:372..569- (Macrocystis pyrifera P11B4 male)
ATTCAGGTAATGCAACTGATGCTACAGGCGCAACGGTGGGACACGACGGA
TGCTGACGCACACGTTGTGCTGGGGGTGCTGTACAATGTGTCTCGCGACT
ACGACAGCGCGGCGGAGGCGTTTCGGAGGGCTCTCGAGGCCAGACCGAAC
GACCACTCGCTCTGGAATAAGGTGGGGAGAAGGGTTTCAACGACGGCG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig106114:372..569-

>mRNA_M-pyrifera_M_contig106114.1321.1 ID=mRNA_M-pyrifera_M_contig106114.1321.1|Name=mRNA_M-pyrifera_M_contig106114.1321.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=378bp|location=Sequence derived from alignment at M-pyrifera_M_contig106114:372..569- (Macrocystis pyrifera P11B4 male)
ATGCAACTGATGCTACAGGCGCAACGGTGGGACACGACGGATGCTGACGC
ACACGTTGTGCTGGGGGTGCTGTACAATGTGTCTCGCGACTACGACAGCG
CGGCGGAGGCGTTTCGGAGGGCTCTCGAGGCCAGACCGAACGACCACTCG
CTCTGGAATAAGGTGGGGAGAAGGGTTTCAACGACGGCGATGCAACTGAT
GCTACAGGCGCAACGGTGGGACACGACGGATGCTGACGCACACGTTGTGC
TGGGGGTGCTGTACAATGTGTCTCGCGACTACGACAGCGCGGCGGAGGCG
TTTCGGAGGGCTCTCGAGGCCAGACCGAACGACCACTCGCTCTGGAATAA
GGTGGGGAGAAGGGTTTCAACGACGGCG
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