mRNA_M-pyrifera_M_contig106071.1317.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_M-pyrifera_M_contig106071.1317.1
Unique Name	mRNA_M-pyrifera_M_contig106071.1317.1
Type	mRNA
Organism	Macrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))

Homology

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BLAST of mRNA_M-pyrifera_M_contig106071.1317.1 vs. uniprot
Match: A0A6I6AHR8_9PLAN (Carboxypeptidase regulatory-like domain-containing protein n=6 Tax=Gimesia TaxID=1649453 RepID=A0A6I6AHR8_9PLAN)

HSP 1 Score: 201 bits (511), Expect = 7.530e-65
Identity = 102/106 (96.23%), Postives = 105/106 (99.06%), Query Frame = 1

Query:    1 TVAVSGMVTYKGAPVPEATIMLYPVQGRKPASGRSDAEGNFTLTTFNKDDGALPGEHQVTVNAFQSTPEGVSMKSSIPIKYSNPSSSPLKVTVAEGDADLKLELTD 318
            TVAVSGMVTYKGAPVPEATIMLYPV+GRKPASGR+DAEG FTLTTFNKDDGALPGEHQVTVNAFQSTPEGVSMKSSIPIKYSNPSSSPLKVTV+EGDADLKLELTD
Sbjct:   33 TVAVSGMVTYKGAPVPEATIMLYPVEGRKPASGRTDAEGKFTLTTFNKDDGALPGEHQVTVNAFQSTPEGVSMKSSIPIKYSNPSSSPLKVTVSEGDADLKLELTD 138

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BLAST of mRNA_M-pyrifera_M_contig106071.1317.1 vs. uniprot
Match: A0A518FUR8_9PLAN (Uncharacterized protein n=2 Tax=Gimesia panareensis TaxID=2527978 RepID=A0A518FUR8_9PLAN)

HSP 1 Score: 188 bits (478), Expect = 8.060e-60
Identity = 96/106 (90.57%), Postives = 101/106 (95.28%), Query Frame = 1

Query:    1 TVAVSGMVTYKGAPVPEATIMLYPVQGRKPASGRSDAEGNFTLTTFNKDDGALPGEHQVTVNAFQSTPEGVSMKSSIPIKYSNPSSSPLKVTVAEGDADLKLELTD 318
            TVAVSG+VTYKG PVPEATIMLYPVQGRKPASGRSDAEG FTLTTFNKDDGALPGEHQVTVNAFQSTPEGVSMKSSIP KYSNP+SSPLKVTV+E + +LKLELTD
Sbjct:   33 TVAVSGVVTYKGNPVPEATIMLYPVQGRKPASGRSDAEGKFTLTTFNKDDGALPGEHQVTVNAFQSTPEGVSMKSSIPTKYSNPTSSPLKVTVSETEPELKLELTD 138

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BLAST of mRNA_M-pyrifera_M_contig106071.1317.1 vs. uniprot
Match: A0A517VJA4_9PLAN (Uncharacterized protein n=1 Tax=Gimesia algae TaxID=2527971 RepID=A0A517VJA4_9PLAN)

HSP 1 Score: 158 bits (400), Expect = 6.340e-48
Identity = 76/106 (71.70%), Postives = 95/106 (89.62%), Query Frame = 1

Query:    1 TVAVSGMVTYKGAPVPEATIMLYPVQGRKPASGRSDAEGNFTLTTFNKDDGALPGEHQVTVNAFQSTPEGVSMKSSIPIKYSNPSSSPLKVTVAEGDADLKLELTD 318
            TVAVSG+VTY+G PV +A+IM YP+QGRKPA+GRSD EG FTL TF ++DGA+PGEHQVTVNA++STPEGVSMKS+IPIKYS+P++SPLK+TV E + ++KLEL D
Sbjct:   34 TVAVSGVVTYQGKPVTDASIMFYPMQGRKPATGRSDTEGKFTLRTFEENDGAIPGEHQVTVNAYESTPEGVSMKSAIPIKYSSPTTSPLKITVTETNPEIKLELID 139

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BLAST of mRNA_M-pyrifera_M_contig106071.1317.1 vs. uniprot
Match: A0A2E2BZM7_9PLAN (Uncharacterized protein n=1 Tax=Gimesia sp. TaxID=2024833 RepID=A0A2E2BZM7_9PLAN)

HSP 1 Score: 158 bits (400), Expect = 6.740e-48
Identity = 75/106 (70.75%), Postives = 95/106 (89.62%), Query Frame = 1

Query:    1 TVAVSGMVTYKGAPVPEATIMLYPVQGRKPASGRSDAEGNFTLTTFNKDDGALPGEHQVTVNAFQSTPEGVSMKSSIPIKYSNPSSSPLKVTVAEGDADLKLELTD 318
            TVAV G+VTY+G PV +A+IM YP+QGRKPA+GRSD  G FTL TF KDDGA+PGEHQVTVNA++STPEGVSMKS+IPIKYS+P+++PLK+TV+E + ++KLEL+D
Sbjct:   36 TVAVRGVVTYQGKPVTDASIMFYPLQGRKPATGRSDTTGKFTLRTFEKDDGAIPGEHQVTVNAYESTPEGVSMKSAIPIKYSSPTTTPLKITVSESNPEIKLELSD 141

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BLAST of mRNA_M-pyrifera_M_contig106071.1317.1 vs. uniprot
Match: A6C8U3_9PLAN (Uncharacterized protein n=5 Tax=Planctomycetaceae TaxID=126 RepID=A6C8U3_9PLAN)

HSP 1 Score: 156 bits (394), Expect = 5.190e-47
Identity = 73/106 (68.87%), Postives = 95/106 (89.62%), Query Frame = 1

Query:    1 TVAVSGMVTYKGAPVPEATIMLYPVQGRKPASGRSDAEGNFTLTTFNKDDGALPGEHQVTVNAFQSTPEGVSMKSSIPIKYSNPSSSPLKVTVAEGDADLKLELTD 318
            TVAV+G+VTY+G PVP+A+IM YP+QGRKPA+GR+D +G FTL TF   DGA+PG HQVTVNA++STPEGVSMKS+IPIKYS+P+++PLK+TV+E + ++KLELTD
Sbjct:   34 TVAVNGVVTYQGKPVPDASIMFYPLQGRKPATGRTDPQGKFTLRTFENADGAIPGAHQVTVNAYESTPEGVSMKSAIPIKYSSPTTTPLKITVSESNPEIKLELTD 139

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BLAST of mRNA_M-pyrifera_M_contig106071.1317.1 vs. uniprot
Match: A0A355G843_9PLAN (Uncharacterized protein n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A355G843_9PLAN)

HSP 1 Score: 153 bits (386), Expect = 2.810e-46
Identity = 71/101 (70.30%), Postives = 91/101 (90.10%), Query Frame = 1

Query:   16 GMVTYKGAPVPEATIMLYPVQGRKPASGRSDAEGNFTLTTFNKDDGALPGEHQVTVNAFQSTPEGVSMKSSIPIKYSNPSSSPLKVTVAEGDADLKLELTD 318
            G+VTY+G PV +A+IM YP+QGRKPA+GRSD  G FTL TF KDDGA+PGEHQVTVNA++STPEGVSMKS+IPIKYS+P+++PLK+TV+E + ++KLEL+D
Sbjct:    3 GVVTYQGKPVTDASIMFYPLQGRKPATGRSDTTGKFTLRTFEKDDGAIPGEHQVTVNAYESTPEGVSMKSAIPIKYSSPTTTPLKITVSESNPEIKLELSD 103

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BLAST of mRNA_M-pyrifera_M_contig106071.1317.1 vs. uniprot
Match: A0A517VSS1_9PLAN (Uncharacterized protein n=2 Tax=Gimesia aquarii TaxID=2527964 RepID=A0A517VSS1_9PLAN)

HSP 1 Score: 151 bits (381), Expect = 4.940e-45
Identity = 73/106 (68.87%), Postives = 91/106 (85.85%), Query Frame = 1

Query:    1 TVAVSGMVTYKGAPVPEATIMLYPVQGRKPASGRSDAEGNFTLTTFNKDDGALPGEHQVTVNAFQSTPEGVSMKSSIPIKYSNPSSSPLKVTVAEGDADLKLELTD 318
            T++V G+VTY+G PVP+A IMLYPVQGRKPASG++DA GNFT+TTF KDDG +PGEH+VTV A++ST EGVSMKS+IP KY+  +SSPL VTV+E + +LKLEL D
Sbjct:   34 TISVKGVVTYQGKPVPDAMIMLYPVQGRKPASGKADASGNFTMTTFEKDDGVIPGEHKVTVTAYESTSEGVSMKSAIPEKYTYQNSSPLTVTVSESENELKLELVD 139

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BLAST of mRNA_M-pyrifera_M_contig106071.1317.1 vs. uniprot
Match: A0A7Y5SR78_9BACT (Uncharacterized protein n=1 Tax=Pirellulales bacterium TaxID=2715253 RepID=A0A7Y5SR78_9BACT)

HSP 1 Score: 90.5 bits (223), Expect = 6.260e-21
Identity = 54/115 (46.96%), Postives = 72/115 (62.61%), Query Frame = 1

Query:    1 TVAVSGMVTYKGAPVPEATIMLYPVQGRKPASGRSDAEGNFTLTTFNKDDGALPGEHQVTVNAFQSTPEGV--------SMKSSIPIKYSNPSSSPLKVTVAEGDA-DLKLELTD 318
            T  V G+VTYKG PV +A +   P +G  PA+GR+DAEG F LTTF  +DGA+PG H VTV      PEG         +  +SIP KY++P+ +PLK+ V  G+  ++KLEL D
Sbjct:   40 TAPVRGVVTYKGNPVADAQVAFRPEKGN-PATGRTDAEGKFVLTTFKAEDGAVPGTHSVTVQVM---PEGALPGMETQSTGAASIPPKYADPAQTPLKIDVKGGEPNEVKLELAD 150

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BLAST of mRNA_M-pyrifera_M_contig106071.1317.1 vs. uniprot
Match: UPI001EE7AFA1 (carboxypeptidase-like regulatory domain-containing protein n=1 Tax=Rubinisphaera sp. ICM_H10 TaxID=2909586 RepID=UPI001EE7AFA1)

HSP 1 Score: 86.7 bits (213), Expect = 1.410e-19
Identity = 53/113 (46.90%), Postives = 72/113 (63.72%), Query Frame = 1

Query:    1 TVAVSGMVTYKGAPVPEATIMLYPVQGRKPASGRSDAEGNFTLTTFNKDDGALPGEHQVTVNAFQSTPEGVS------MKSSIPIKYSNPSSSPLKVTVAEG-DADLKLELTD 318
            TV V+G+VT  G PV +A++  YP  GR PA+GR+DAEG +TLTTF   DGA+PGEH+V+++  Q+ PE  S      +KS IP  Y+N  +S LK  V  G DA +   L +
Sbjct:   26 TVPVTGLVTLDGTPVADASVTFYPDSGR-PATGRTDAEGIYTLTTFETGDGAVPGEHRVSISK-QTIPESNSTEDLEAIKSEIPAVYNNAETSGLKAEVVAGQDAPIDFNLAE 136

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BLAST of mRNA_M-pyrifera_M_contig106071.1317.1 vs. uniprot
Match: A0A2E9VVN2_9PLAN (Uncharacterized protein n=2 Tax=Planctomycetaceae TaxID=126 RepID=A0A2E9VVN2_9PLAN)

HSP 1 Score: 84.7 bits (208), Expect = 6.170e-19
Identity = 51/110 (46.36%), Postives = 68/110 (61.82%), Query Frame = 1

Query:    1 TVAVSGMVTYKGAPVPEATIMLYPVQGRKPASGRSDAEGNFTLTTFNKDDGALPGEHQVTVNAFQ-STPEG--VSMKSSIPIKYSNPSSSPLKVTVAEGD-ADLKLELTD 318
            T AV G V YKG+PV +A +M  P  GR PASG SD +G FTLTT++  DGA  GEHQV +   + ++P     + KS IP KY    +SPLK ++  GD  ++ +EL D
Sbjct:   18 TYAVKGKVIYKGSPVAQANVMFIPENGR-PASGTSDDQGEFTLTTYSNSDGAQSGEHQVLITKLEPASPSDPYATRKSLIPEKYGELKTSPLKQSIKAGDNPEITIELKD 126

The following BLAST results are available for this feature:

BLAST of mRNA_M-pyrifera_M_contig106071.1317.1 vs. uniprot

BLAST of mRNA_M-pyrifera_M_contig106071.1317.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6I6AHR8_9PLAN	7.530e-65	96.23	Carboxypeptidase regulatory-like domain-containing...	[more]
A0A518FUR8_9PLAN	8.060e-60	90.57	Uncharacterized protein n=2 Tax=Gimesia panareensi...	[more]
A0A517VJA4_9PLAN	6.340e-48	71.70	Uncharacterized protein n=1 Tax=Gimesia algae TaxI...	[more]
A0A2E2BZM7_9PLAN	6.740e-48	70.75	Uncharacterized protein n=1 Tax=Gimesia sp. TaxID=...	[more]
A6C8U3_9PLAN	5.190e-47	68.87	Uncharacterized protein n=5 Tax=Planctomycetaceae ...	[more]
A0A355G843_9PLAN	2.810e-46	70.30	Uncharacterized protein n=1 Tax=Planctomycetaceae ...	[more]
A0A517VSS1_9PLAN	4.940e-45	68.87	Uncharacterized protein n=2 Tax=Gimesia aquarii Ta...	[more]
A0A7Y5SR78_9BACT	6.260e-21	46.96	Uncharacterized protein n=1 Tax=Pirellulales bacte...	[more]
UPI001EE7AFA1	1.410e-19	46.90	carboxypeptidase-like regulatory domain-containing...	[more]
A0A2E9VVN2_9PLAN	6.170e-19	46.36	Uncharacterized protein n=2 Tax=Planctomycetaceae ...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
M-pyrifera_M_contig106071	contig	M-pyrifera_M_contig106071:3..323 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90	2022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Bacteria
Seed ortholog score	67.8
Seed ortholog evalue	3.4e-09
Seed eggNOG ortholog	344747.PM8797T_12648
Hectar predicted targeting category	other localisation
EggNOG OGs	2E5C9@1,2J0YR@203682,3304A@2
Best tax level	Planctomycetes
Best eggNOG OG	NA\|NA\|NA
Exons	1
Model size	321
Cds size	303
Stop	1
Start	1

Relationships

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622815570.7816808-UTR-M-pyrifera_M_contig106071:2..20	1622815570.7816808-UTR-M-pyrifera_M_contig106071:2..20	Macrocystis pyrifera P11B4 male	UTR	M-pyrifera_M_contig106071 3..20 +
1692277468.7300432-UTR-M-pyrifera_M_contig106071:2..20	1692277468.7300432-UTR-M-pyrifera_M_contig106071:2..20	Macrocystis pyrifera P11B4 male	UTR	M-pyrifera_M_contig106071 3..20 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622815570.7941184-CDS-M-pyrifera_M_contig106071:20..323	1622815570.7941184-CDS-M-pyrifera_M_contig106071:20..323	Macrocystis pyrifera P11B4 male	CDS	M-pyrifera_M_contig106071 21..323 +
1692277468.7473276-CDS-M-pyrifera_M_contig106071:20..323	1692277468.7473276-CDS-M-pyrifera_M_contig106071:20..323	Macrocystis pyrifera P11B4 male	CDS	M-pyrifera_M_contig106071 21..323 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_M-pyrifera_M_contig106071.1317.1	prot_M-pyrifera_M_contig106071.1317.1	Macrocystis pyrifera P11B4 male	polypeptide	M-pyrifera_M_contig106071 21..323 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at M-pyrifera_M_contig106071:3..323+
coding sequence from alignment at M-pyrifera_M_contig106071:3..323+

protein sequence of mRNA_M-pyrifera_M_contig106071.1317.1

>prot_M-pyrifera_M_contig106071.1317.1 ID=prot_M-pyrifera_M_contig106071.1317.1|Name=mRNA_M-pyrifera_M_contig106071.1317.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=101bp
MVTYKGAPVPEATIMLYPVQGRKPASGRSDAEGNFTLTTFNKDDGALPGE
HQVTVNAFQSTPEGVSMKSSIPIKYSNPSSSPLKVTVAEGDADLKLELTD
*

mRNA from alignment at M-pyrifera_M_contig106071:3..323+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_M-pyrifera_M_contig106071.1317.1 ID=mRNA_M-pyrifera_M_contig106071.1317.1|Name=mRNA_M-pyrifera_M_contig106071.1317.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=321bp|location=Sequence derived from alignment at M-pyrifera_M_contig106071:3..323+ (Macrocystis pyrifera P11B4 male)
ACCGTCGCGGTTTCCGGAATGGTGACCTACAAGGGAGCACCGGTTCCCGA
AGCTACGATTATGCTCTACCCGGTTCAGGGACGTAAGCCGGCTTCCGGCC
GATCGGACGCGGAAGGGAATTTTACGCTGACCACGTTCAACAAAGACGAT
GGTGCCCTGCCCGGCGAACATCAGGTGACGGTGAATGCGTTTCAGTCGAC
GCCTGAAGGGGTATCGATGAAAAGTTCCATCCCGATCAAGTATTCAAACC
CGAGCAGTTCGCCTTTGAAGGTGACTGTTGCTGAAGGGGATGCGGATCTG
AAGCTGGAACTGACGGATTGA

Coding sequence (CDS) from alignment at M-pyrifera_M_contig106071:3..323+

>mRNA_M-pyrifera_M_contig106071.1317.1 ID=mRNA_M-pyrifera_M_contig106071.1317.1|Name=mRNA_M-pyrifera_M_contig106071.1317.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=606bp|location=Sequence derived from alignment at M-pyrifera_M_contig106071:3..323+ (Macrocystis pyrifera P11B4 male)
ATGGTGACCTACAAGGGAGCACCGGTTCCCGAAGCTACGATTATGCTCTA
CCCGGTTCAGGGACGTAAGCCGGCTTCCGGCCGATCGGACGCGGAAGGGA
ATTTTACGCTGACCACGTTCAACAAAGACGATGGTGCCCTGCCCGGCGAA
CATCAGGTGACGGTGAATGCGTTTCAGTCGACGCCTGAAGGGGTATCGAT
GAAAAGTTCCATCCCGATCAAGTATTCAAACCCGAGCAGTTCGCCTTTGA
AGGTGACTGTTGCTGAAGGGGATGCGGATCTGAAGCTGGAACTGACGGAT
TGAATGGTGACCTACAAGGGAGCACCGGTTCCCGAAGCTACGATTATGCT
CTACCCGGTTCAGGGACGTAAGCCGGCTTCCGGCCGATCGGACGCGGAAG
GGAATTTTACGCTGACCACGTTCAACAAAGACGATGGTGCCCTGCCCGGC
GAACATCAGGTGACGGTGAATGCGTTTCAGTCGACGCCTGAAGGGGTATC
GATGAAAAGTTCCATCCCGATCAAGTATTCAAACCCGAGCAGTTCGCCTT
TGAAGGTGACTGTTGCTGAAGGGGATGCGGATCTGAAGCTGGAACTGACG
GATTGA