mRNA_M-pyrifera_M_contig106066.1315.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig106066.1315.1
Unique NamemRNA_M-pyrifera_M_contig106066.1315.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig106066.1315.1 vs. uniprot
Match: A0A2E7KLD4_9PLAN (Flg_hook domain-containing protein n=6 Tax=Gimesia TaxID=1649453 RepID=A0A2E7KLD4_9PLAN)

HSP 1 Score: 249 bits (637), Expect = 4.550e-76
Identity = 193/210 (91.90%), Postives = 195/210 (92.86%), Query Frame = 1 
Query:    1 NQTETTSLNETPGDVEGGQQLQDAGQSEEIIDAVADNQQAAEEGQSVESAEQLKGVKQTEDQQAANQKSQDEHSSSDNVKSDVSQAAQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVIDQVQEQTEKAGPDKTESTDEKTEKKVDGDKVLPEQSALNQTNLHPAAASATTDALQKALTEATKPGPLAQEQHAGNQNSHD 630
            NQTETTSLNETPGDVEG QQLQ+AGQSEEIIDAVADNQQAAEEGQSVESAEQLKGVKQTEDQQAANQKSQDEHSSS      VSQ   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    VQEQTEKAGPDKTESTDEKTEKKVDGDKVLPEQSALNQTNLHPAAASATTDALQKALTEATKPGPLA+EQHAGNQN HD
Sbjct:  231 NQTETTSLNETPGDVEGDQQLQEAGQSEEIIDAVADNQQAAEEGQSVESAEQLKGVKQTEDQQAANQKSQDEHSSSXXXXXXVSQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVQEQTEKAGPDKTESTDEKTEKKVDGDKVLPEQSALNQTNLHPAAASATTDALQKALTEATKPGPLAREQHAGNQNGHD 440
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BLAST of mRNA_M-pyrifera_M_contig106066.1315.1 vs. uniprot
Match: A0A518A4Q8_9PLAN (Flagellar hook-length control protein FliK n=3 Tax=Gimesia panareensis TaxID=2527978 RepID=A0A518A4Q8_9PLAN)

HSP 1 Score: 117 bits (294), Expect = 5.170e-27
Identity = 104/214 (48.60%), Postives = 127/214 (59.35%), Query Frame = 1 
Query:    4 QTETTSLNETPGDVEGGQQLQDAGQSEEIIDAVADNQQAAEEGQSVESAEQLKGVKQTEDQQAANQKSQDEHSSSDNVKSDVSQAAQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---VIDQVQEQTEKAGPDKTESTDEKTEKKVDGDKVLPEQSALNQT--NLHPAAASATTDALQKALTEATKPGPLAQEQHAGNQNSHD 630
            QT+ T+  E+       QQ+Q A QSEE+I+AVAD+Q  ++E Q   S + LK +K T++ +AA QK Q++ S   N K+D SQA Q                    XXXXXXXXX             VIDQVQ+Q ++ GPDKTE +D+KTEK  D DK LP+QSALNQ    L PAA    TDALQKALTEATKP PL QEQHA N   HD
Sbjct:  238 QTDATAQGESAKVPVEDQQVQAADQSEELINAVADDQSPSDETQPEVSLDTLKQIKMTDELKAAIQKFQEQQSKQGNEKADASQADQQAALQQRYLNSQQQQNADNGXXXXXXXXXASDQNTGQQASQTVIDQVQQQADQTGPDKTEVSDKKTEKHADTDKNLPDQSALNQAPHQLKPAA----TDALQKALTEATKPNPLTQEQHAANPAGHD 447
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig106066.1315.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2E7KLD4_9PLAN4.550e-7691.90Flg_hook domain-containing protein n=6 Tax=Gimesia... [more]
A0A518A4Q8_9PLAN5.170e-2748.60Flagellar hook-length control protein FliK n=3 Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig106066contigM-pyrifera_M_contig106066:1..630 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size630
Cds size630
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815570.7036865-CDS-M-pyrifera_M_contig106066:0..6301622815570.7036865-CDS-M-pyrifera_M_contig106066:0..630Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig106066 1..630 -
1692277468.6901338-CDS-M-pyrifera_M_contig106066:0..6301692277468.6901338-CDS-M-pyrifera_M_contig106066:0..630Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig106066 1..630 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig106066.1315.1prot_M-pyrifera_M_contig106066.1315.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig106066 1..630 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig106066.1315.1

>prot_M-pyrifera_M_contig106066.1315.1 ID=prot_M-pyrifera_M_contig106066.1315.1|Name=mRNA_M-pyrifera_M_contig106066.1315.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=210bp
NQTETTSLNETPGDVEGGQQLQDAGQSEEIIDAVADNQQAAEEGQSVESA
EQLKGVKQTEDQQAANQKSQDEHSSSDNVKSDVSQAAQEAAQQQRYLKAQ
QQNPNENHPQQGQDAGDANPGQQVAQAVIDQVQEQTEKAGPDKTESTDEK
TEKKVDGDKVLPEQSALNQTNLHPAAASATTDALQKALTEATKPGPLAQE
QHAGNQNSHD
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mRNA from alignment at M-pyrifera_M_contig106066:1..630-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig106066.1315.1 ID=mRNA_M-pyrifera_M_contig106066.1315.1|Name=mRNA_M-pyrifera_M_contig106066.1315.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=630bp|location=Sequence derived from alignment at M-pyrifera_M_contig106066:1..630- (Macrocystis pyrifera P11B4 male)
AATCAGACTGAGACAACGTCCCTGAATGAGACTCCCGGTGATGTCGAGGG
GGGGCAGCAGCTCCAGGACGCGGGACAGTCAGAGGAAATCATTGATGCTG
TTGCCGATAATCAGCAGGCTGCTGAAGAAGGGCAGTCAGTAGAGTCAGCG
GAGCAACTCAAAGGGGTTAAGCAGACCGAAGATCAGCAGGCTGCGAATCA
AAAGTCCCAGGATGAGCACTCAAGCTCAGACAATGTGAAAAGCGATGTCT
CCCAGGCAGCGCAAGAGGCTGCTCAGCAGCAACGTTATCTGAAAGCCCAG
CAGCAGAATCCAAATGAAAATCATCCACAGCAGGGACAGGATGCCGGTGA
CGCGAATCCGGGTCAGCAGGTCGCACAGGCGGTGATTGATCAGGTTCAGG
AGCAGACCGAGAAAGCCGGTCCTGACAAGACGGAGTCGACAGACGAAAAA
ACAGAAAAGAAGGTCGATGGGGACAAGGTGCTGCCAGAGCAGAGTGCGCT
GAACCAGACGAATCTGCATCCTGCAGCAGCCTCAGCGACGACTGATGCCT
TACAGAAGGCCCTGACCGAGGCAACCAAACCTGGTCCGCTCGCGCAGGAA
CAGCATGCCGGCAATCAGAATAGTCACGAT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig106066:1..630-

>mRNA_M-pyrifera_M_contig106066.1315.1 ID=mRNA_M-pyrifera_M_contig106066.1315.1|Name=mRNA_M-pyrifera_M_contig106066.1315.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1260bp|location=Sequence derived from alignment at M-pyrifera_M_contig106066:1..630- (Macrocystis pyrifera P11B4 male)
AATCAGACTGAGACAACGTCCCTGAATGAGACTCCCGGTGATGTCGAGGG
GGGGCAGCAGCTCCAGGACGCGGGACAGTCAGAGGAAATCATTGATGCTG
TTGCCGATAATCAGCAGGCTGCTGAAGAAGGGCAGTCAGTAGAGTCAGCG
GAGCAACTCAAAGGGGTTAAGCAGACCGAAGATCAGCAGGCTGCGAATCA
AAAGTCCCAGGATGAGCACTCAAGCTCAGACAATGTGAAAAGCGATGTCT
CCCAGGCAGCGCAAGAGGCTGCTCAGCAGCAACGTTATCTGAAAGCCCAG
CAGCAGAATCCAAATGAAAATCATCCACAGCAGGGACAGGATGCCGGTGA
CGCGAATCCGGGTCAGCAGGTCGCACAGGCGGTGATTGATCAGGTTCAGG
AGCAGACCGAGAAAGCCGGTCCTGACAAGACGGAGTCGACAGACGAAAAA
ACAGAAAAGAAGGTCGATGGGGACAAGGTGCTGCCAGAGCAGAGTGCGCT
GAACCAGACGAATCTGCATCCTGCAGCAGCCTCAGCGACGACTGATGCCT
TACAGAAGGCCCTGACCGAGGCAACCAAACCTGGTCCGCTCGCGCAGGAA
CAGCATGCCGGCAATCAGAATAGTCACGATAATCAGACTGAGACAACGTC
CCTGAATGAGACTCCCGGTGATGTCGAGGGGGGGCAGCAGCTCCAGGACG
CGGGACAGTCAGAGGAAATCATTGATGCTGTTGCCGATAATCAGCAGGCT
GCTGAAGAAGGGCAGTCAGTAGAGTCAGCGGAGCAACTCAAAGGGGTTAA
GCAGACCGAAGATCAGCAGGCTGCGAATCAAAAGTCCCAGGATGAGCACT
CAAGCTCAGACAATGTGAAAAGCGATGTCTCCCAGGCAGCGCAAGAGGCT
GCTCAGCAGCAACGTTATCTGAAAGCCCAGCAGCAGAATCCAAATGAAAA
TCATCCACAGCAGGGACAGGATGCCGGTGACGCGAATCCGGGTCAGCAGG
TCGCACAGGCGGTGATTGATCAGGTTCAGGAGCAGACCGAGAAAGCCGGT
CCTGACAAGACGGAGTCGACAGACGAAAAAACAGAAAAGAAGGTCGATGG
GGACAAGGTGCTGCCAGAGCAGAGTGCGCTGAACCAGACGAATCTGCATC
CTGCAGCAGCCTCAGCGACGACTGATGCCTTACAGAAGGCCCTGACCGAG
GCAACCAAACCTGGTCCGCTCGCGCAGGAACAGCATGCCGGCAATCAGAA
TAGTCACGAT
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