mRNA_M-pyrifera_M_contig106061.1314.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig106061.1314.1
Unique NamemRNA_M-pyrifera_M_contig106061.1314.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig106061.1314.1 vs. uniprot
Match: A0A5A8DKA1_CAFRO (Uncharacterized protein n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DKA1_CAFRO)

HSP 1 Score: 122 bits (305), Expect = 3.170e-30
Identity = 54/96 (56.25%), Postives = 73/96 (76.04%), Query Frame = 1
Query:    4 SRFVDPPESAIDHENHTGQWVSNFRTIWDGRDDNTLV-IGAMGTRAVEFYDATSGKKVHEMADPDRLTAIPAINAVHPSKPLVLSGTASGRAHIWS 288
            SRF DP   AI H NHTG+W+SNFRT+++      +V +GAMGTR ++F+ + +GK +HE+ D ++LTA+P INA HPS PL+LS TASGRAH+WS
Sbjct:  511 SRFADPAGVAIKHNNHTGRWLSNFRTVFEPLSGGHVVLVGAMGTRRIQFFSSFTGKLLHEVGDEEQLTAVPTINAFHPSLPLILSTTASGRAHLWS 606          
BLAST of mRNA_M-pyrifera_M_contig106061.1314.1 vs. uniprot
Match: A0A482RS44_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RS44_9ARCH)

HSP 1 Score: 91.3 bits (225), Expect = 6.040e-22
Identity = 44/90 (48.89%), Postives = 67/90 (74.44%), Query Frame = 1
Query:   31 AIDHENHTGQWVSNFRTIWDGRDDNTLVIGAMGTRAVEFYDATSGKKVHEMADPDRLTAIPAINAVHP--SKPLVLSGTASGRAHIWSVG 294
            +IDH NHTG+W+S FRT +D  +D+TL++G+M  RAVE + + SGK++   +  + LTA+P++NA+HP  +   ++SGTASGR H+WS G
Sbjct:    6 SIDHNNHTGRWLSCFRTTFDPCNDDTLMVGSMD-RAVELFHSVSGKRLFAHSS-ELLTAVPSLNAMHPHHNASWIVSGTASGRMHLWSRG 93          
BLAST of mRNA_M-pyrifera_M_contig106061.1314.1 vs. uniprot
Match: K7FRR7_PELSI (WD repeat-containing protein 76 n=1 Tax=Pelodiscus sinensis TaxID=13735 RepID=K7FRR7_PELSI)

HSP 1 Score: 82.8 bits (203), Expect = 2.480e-16
Identity = 36/90 (40.00%), Postives = 61/90 (67.78%), Query Frame = 1
Query:   19 PPESAIDHENHTGQWVSNFRTIWDGRDDNTLVIGAMGT-RAVEFYDATSGKKVHEMADPDRLTAIPAINAVHPSKPLVLSGTASGRAHIW 285
            P  +AI H N+TG+W++ FR +WD + ++  V+G+M   R +E + AT GK +H   + D L ++ +INAVHP+K +++ G +SGR H++
Sbjct:  507 PVVTAIRHNNNTGRWLTRFRAVWDPKQEDCFVVGSMARPRQIEIFQAT-GKLLHSFYNEDYLGSVCSINAVHPTKNILVGGNSSGRLHVF 595          
BLAST of mRNA_M-pyrifera_M_contig106061.1314.1 vs. uniprot
Match: A0A8C8VE13_9SAUR (WD repeat-containing protein 76 n=1 Tax=Pelusios castaneus TaxID=367368 RepID=A0A8C8VE13_9SAUR)

HSP 1 Score: 81.6 bits (200), Expect = 4.850e-16
Identity = 35/90 (38.89%), Postives = 63/90 (70.00%), Query Frame = 1
Query:   19 PPESAIDHENHTGQWVSNFRTIWDGRDDNTLVIGAMGT-RAVEFYDATSGKKVHEMADPDRLTAIPAINAVHPSKPLVLSGTASGRAHIW 285
            P  +AI H N+TG+W++ FR IWD + ++ +V+G+M   R +E + AT G+++H   + D L ++ +INA+HP+K +++ G +SGR H++
Sbjct:  314 PVLTAIKHNNNTGRWLTRFRAIWDPKQEDCIVVGSMARPRQIEVFQAT-GEQLHSFYNVDYLGSVCSINAMHPTKNILVGGNSSGRLHVF 402          
BLAST of mRNA_M-pyrifera_M_contig106061.1314.1 vs. uniprot
Match: A0A4D9ECP5_9SAUR (WD repeat-containing protein 76 n=19 Tax=Durocryptodira TaxID=1579337 RepID=A0A4D9ECP5_9SAUR)

HSP 1 Score: 79.3 bits (194), Expect = 4.100e-15
Identity = 34/90 (37.78%), Postives = 61/90 (67.78%), Query Frame = 1
Query:   19 PPESAIDHENHTGQWVSNFRTIWDGRDDNTLVIGAMGT-RAVEFYDATSGKKVHEMADPDRLTAIPAINAVHPSKPLVLSGTASGRAHIW 285
            P  +A+ H N+TG+W++ FR IWD + ++  V+G+M   R +E +  T G+++H   + D L ++ +INAVHP+K +++ G +SGR H++
Sbjct:  542 PVLTAVRHNNNTGRWLTRFRAIWDPKQEDCFVVGSMARPRQIEIFQDT-GEQLHSFYNVDYLGSVCSINAVHPTKNILVGGNSSGRLHVF 630          
BLAST of mRNA_M-pyrifera_M_contig106061.1314.1 vs. uniprot
Match: H3AEJ9_LATCH (WD repeat-containing protein 76 n=1 Tax=Latimeria chalumnae TaxID=7897 RepID=H3AEJ9_LATCH)

HSP 1 Score: 78.2 bits (191), Expect = 1.040e-14
Identity = 33/86 (38.37%), Postives = 57/86 (66.28%), Query Frame = 1
Query:   31 AIDHENHTGQWVSNFRTIWDGRDDNTLVIGAMGT-RAVEFYDATSGKKVHEMADPDRLTAIPAINAVHPSKPLVLSGTASGRAHIW 285
            +I H N+TG+W++ FR +WD + +N  V+G+M   R +E +  T G  VH   + D L ++ +INA+HPS+ +++ G +SGR H++
Sbjct:  549 SIRHNNYTGRWLTKFRAVWDPKQENCFVVGSMARPRQIEVFHDT-GSLVHNFMNEDYLGSVCSINAMHPSRNILVGGNSSGRVHVF 633          
BLAST of mRNA_M-pyrifera_M_contig106061.1314.1 vs. uniprot
Match: WDR76_XENLA (WD repeat-containing protein 76 n=2 Tax=Xenopus laevis TaxID=8355 RepID=WDR76_XENLA)

HSP 1 Score: 77.8 bits (190), Expect = 1.410e-14
Identity = 34/90 (37.78%), Postives = 59/90 (65.56%), Query Frame = 1
Query:   19 PPESAIDHENHTGQWVSNFRTIWDGRDDNTLVIGAMGT-RAVEFYDATSGKKVHEMADPDRLTAIPAINAVHPSKPLVLSGTASGRAHIW 285
            P  +A  H N+TG+W++ FR +WD + ++  V+G+M   R +E Y+  SGK  H   D + L ++ +INA+HP++ L++ G +SGR H++
Sbjct:  490 PLLTAFRHNNNTGRWLTRFRAVWDPKQESCFVVGSMARPRQIEVYNE-SGKLEHSFWDSEHLGSVCSINAMHPTRNLLVGGNSSGRLHVF 578          
BLAST of mRNA_M-pyrifera_M_contig106061.1314.1 vs. uniprot
Match: UPI001454ECD3 (WD repeat-containing protein 76-like isoform X1 n=2 Tax=Asterias rubens TaxID=7604 RepID=UPI001454ECD3)

HSP 1 Score: 77.4 bits (189), Expect = 1.930e-14
Identity = 30/88 (34.09%), Postives = 59/88 (67.05%), Query Frame = 1
Query:   25 ESAIDHENHTGQWVSNFRTIW-DGRDDNTLVIGAMGTRAVEFYDATSGKKVHEMADPDRLTAIPAINAVHPSKPLVLSGTASGRAHIW 285
            +++I H+NHTG+W+SNFR++W  GR+D  ++   +  R ++ Y    G  +H + D + L ++ +INA HP++ +++ G +SG+ H++
Sbjct:  497 QTSISHDNHTGRWLSNFRSVWYPGREDAVIIGSMLRPRRIQVY-GEGGTLLHTLMDEESLGSVCSINACHPTRDIIVGGNSSGKLHVF 583          
BLAST of mRNA_M-pyrifera_M_contig106061.1314.1 vs. uniprot
Match: A0A8C3J558_9CHAR (WD repeat-containing protein 76 n=1 Tax=Calidris pygmaea TaxID=425635 RepID=A0A8C3J558_9CHAR)

HSP 1 Score: 76.3 bits (186), Expect = 4.230e-14
Identity = 32/83 (38.55%), Postives = 58/83 (69.88%), Query Frame = 1
Query:   40 HENHTGQWVSNFRTIWDGRDDNTLVIGAMGT-RAVEFYDATSGKKVHEMADPDRLTAIPAINAVHPSKPLVLSGTASGRAHIW 285
            H N+TG+W++ F+ +WD R ++  V+G++   R VE +  T G+ +H   +PD L+++ +INA+HPSK +++ G +SGR H++
Sbjct:  326 HNNNTGRWLTRFQAVWDPRREDCFVVGSLARPRQVEVFQDT-GELLHSFYNPDCLSSVCSINALHPSKNILVGGNSSGRLHVF 407          
BLAST of mRNA_M-pyrifera_M_contig106061.1314.1 vs. uniprot
Match: A0A077WR73_9FUNG (DNA damage-binding protein CMR1 n=2 Tax=Lichtheimia TaxID=688353 RepID=A0A077WR73_9FUNG)

HSP 1 Score: 76.3 bits (186), Expect = 4.610e-14
Identity = 40/93 (43.01%), Postives = 56/93 (60.22%), Query Frame = 1
Query:   28 SAIDHENHTGQWVSNFRTIWDGRDDNT----LVIGAMGTRAVEFYDATSGKKVHEMADPDRLTAIPAINAVHPS--KPLVLSGTASGRAHIWS 288
            SAI H NHTG+WV+ FRT W+     T     ++G M    ++F+   +G+++  ++D DRLTAI A+   HPS  K LV +G ASGR   WS
Sbjct:  365 SAIPHNNHTGKWVTMFRTRWNQNPAATRHQHFIVGNM-KHTIDFFSGETGQEICALSDRDRLTAIQAVAVFHPSTEKTLVATGNASGRMACWS 456          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig106061.1314.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5A8DKA1_CAFRO3.170e-3056.25Uncharacterized protein n=2 Tax=Cafeteria roenberg... [more]
A0A482RS44_9ARCH6.040e-2248.89Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
K7FRR7_PELSI2.480e-1640.00WD repeat-containing protein 76 n=1 Tax=Pelodiscus... [more]
A0A8C8VE13_9SAUR4.850e-1638.89WD repeat-containing protein 76 n=1 Tax=Pelusios c... [more]
A0A4D9ECP5_9SAUR4.100e-1537.78WD repeat-containing protein 76 n=19 Tax=Durocrypt... [more]
H3AEJ9_LATCH1.040e-1438.37WD repeat-containing protein 76 n=1 Tax=Latimeria ... [more]
WDR76_XENLA1.410e-1437.78WD repeat-containing protein 76 n=2 Tax=Xenopus la... [more]
UPI001454ECD31.930e-1434.09WD repeat-containing protein 76-like isoform X1 n=... [more]
A0A8C3J558_9CHAR4.230e-1438.55WD repeat-containing protein 76 n=1 Tax=Calidris p... [more]
A0A077WR73_9FUNG4.610e-1443.01DNA damage-binding protein CMR1 n=2 Tax=Lichtheimi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig106061contigM-pyrifera_M_contig106061:243..548 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score83.2
Seed ortholog evalue7.8e-14
Seed eggNOG ortholog13735.ENSPSIP00000010727
Preferred nameWDR76
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003676,GO:0003677,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0008150,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044464,GO:0048583,GO:0050789,GO:0050794,GO:0051726,GO:0065007,GO:0080134,GO:0080135,GO:0097159,GO:1901363,GO:1901976,GO:2000001,GO:2001020
EggNOG free text desc.WD repeat-containing protein 76
EggNOG OGs38E0S@33154,3BGHI@33208,3D2B4@33213,481SI@7711,48WWT@7742,4C98F@8459,KOG4328@1,KOG4328@2759
COG Functional cat.S
Best tax levelTestudines
Best eggNOG OGNA|NA|NA
Exons1
Model size306
Cds size306
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815570.658514-CDS-M-pyrifera_M_contig106061:242..5481622815570.658514-CDS-M-pyrifera_M_contig106061:242..548Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig106061 243..548 -
1692277468.6777067-CDS-M-pyrifera_M_contig106061:242..5481692277468.6777067-CDS-M-pyrifera_M_contig106061:242..548Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig106061 243..548 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig106061.1314.1prot_M-pyrifera_M_contig106061.1314.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig106061 243..548 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig106061.1314.1

>prot_M-pyrifera_M_contig106061.1314.1 ID=prot_M-pyrifera_M_contig106061.1314.1|Name=mRNA_M-pyrifera_M_contig106061.1314.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=102bp
MSRFVDPPESAIDHENHTGQWVSNFRTIWDGRDDNTLVIGAMGTRAVEFY
DATSGKKVHEMADPDRLTAIPAINAVHPSKPLVLSGTASGRAHIWSVGGK
I*
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mRNA from alignment at M-pyrifera_M_contig106061:243..548-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig106061.1314.1 ID=mRNA_M-pyrifera_M_contig106061.1314.1|Name=mRNA_M-pyrifera_M_contig106061.1314.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=306bp|location=Sequence derived from alignment at M-pyrifera_M_contig106061:243..548- (Macrocystis pyrifera P11B4 male)
ATGAGTCGATTTGTAGATCCTCCAGAATCAGCGATTGACCACGAGAACCA CACGGGGCAATGGGTGTCCAATTTTAGGACGATTTGGGATGGTCGAGATG ACAACACGCTGGTGATTGGGGCGATGGGAACACGAGCGGTTGAATTCTAC GACGCAACGAGTGGGAAGAAAGTTCACGAAATGGCAGATCCCGACCGCCT CACCGCCATCCCCGCCATCAACGCAGTCCACCCTTCCAAACCCCTCGTCC TCTCCGGCACCGCCTCGGGAAGGGCTCACATCTGGTCCGTGGGAGGCAAG ATTTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig106061:243..548-

>mRNA_M-pyrifera_M_contig106061.1314.1 ID=mRNA_M-pyrifera_M_contig106061.1314.1|Name=mRNA_M-pyrifera_M_contig106061.1314.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=612bp|location=Sequence derived from alignment at M-pyrifera_M_contig106061:243..548- (Macrocystis pyrifera P11B4 male)
ATGAGTCGATTTGTAGATCCTCCAGAATCAGCGATTGACCACGAGAACCA
CACGGGGCAATGGGTGTCCAATTTTAGGACGATTTGGGATGGTCGAGATG
ACAACACGCTGGTGATTGGGGCGATGGGAACACGAGCGGTTGAATTCTAC
GACGCAACGAGTGGGAAGAAAGTTCACGAAATGGCAGATCCCGACCGCCT
CACCGCCATCCCCGCCATCAACGCAGTCCACCCTTCCAAACCCCTCGTCC
TCTCCGGCACCGCCTCGGGAAGGGCTCACATCTGGTCCGTGGGAGGCAAG
ATTTGAATGAGTCGATTTGTAGATCCTCCAGAATCAGCGATTGACCACGA
GAACCACACGGGGCAATGGGTGTCCAATTTTAGGACGATTTGGGATGGTC
GAGATGACAACACGCTGGTGATTGGGGCGATGGGAACACGAGCGGTTGAA
TTCTACGACGCAACGAGTGGGAAGAAAGTTCACGAAATGGCAGATCCCGA
CCGCCTCACCGCCATCCCCGCCATCAACGCAGTCCACCCTTCCAAACCCC
TCGTCCTCTCCGGCACCGCCTCGGGAAGGGCTCACATCTGGTCCGTGGGA
GGCAAGATTTGA
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