mRNA_M-pyrifera_M_contig106041.1308.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig106041.1308.1
Unique NamemRNA_M-pyrifera_M_contig106041.1308.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig106041.1308.1 vs. uniprot
Match: UPI001F1ACD25 (DUF4272 domain-containing protein n=1 Tax=Tenacibaculum ovolyticum TaxID=104270 RepID=UPI001F1ACD25)

HSP 1 Score: 98.6 bits (244), Expect = 8.500e-24
Identity = 42/63 (66.67%), Postives = 52/63 (82.54%), Query Frame = 1
Query:    1 EVIRLEDRFYCAHNAVRNAQVGRETVPNGLDPIVNGGVLHERRHVLTWAVSSGGRWDDTDLRT 189
            ++I+ ED FYC HNAVR+AQ+GRETVPNG DP+ NGGV+HERRH LTW +S G  W++TDL T
Sbjct:  191 KLIQKEDLFYCIHNAVRSAQMGRETVPNGFDPMGNGGVIHERRHSLTWMLSKGISWEETDLST 253          
BLAST of mRNA_M-pyrifera_M_contig106041.1308.1 vs. uniprot
Match: A0A2D4YAV9_9FLAO (Uncharacterized protein n=1 Tax=Flavobacteriaceae bacterium TaxID=1871037 RepID=A0A2D4YAV9_9FLAO)

HSP 1 Score: 98.2 bits (243), Expect = 1.220e-23
Identity = 42/63 (66.67%), Postives = 52/63 (82.54%), Query Frame = 1
Query:    1 EVIRLEDRFYCAHNAVRNAQVGRETVPNGLDPIVNGGVLHERRHVLTWAVSSGGRWDDTDLRT 189
            E+I+ ED FYC HNAVR+AQ+GRE+VP+G DPI NGGV+HERRH LTW +S G  W++TDL T
Sbjct:  192 ELIQKEDLFYCLHNAVRSAQLGRESVPDGFDPIGNGGVIHERRHSLTWMLSKGINWEETDLST 254          
BLAST of mRNA_M-pyrifera_M_contig106041.1308.1 vs. uniprot
Match: A0A0T0M6D6_9FLAO (Uncharacterized protein n=2 Tax=Chryseobacterium TaxID=59732 RepID=A0A0T0M6D6_9FLAO)

HSP 1 Score: 97.8 bits (242), Expect = 1.690e-23
Identity = 41/58 (70.69%), Postives = 47/58 (81.03%), Query Frame = 1
Query:   16 EDRFYCAHNAVRNAQVGRETVPNGLDPIVNGGVLHERRHVLTWAVSSGGRWDDTDLRT 189
            ED FYC HNAVR+AQ+GR+TVP   DPI NGGV+HERRH LTW +S+G  WDDTDL T
Sbjct:  196 EDMFYCIHNAVRSAQMGRKTVPENFDPIANGGVIHERRHALTWMLSNGVSWDDTDLST 253          
BLAST of mRNA_M-pyrifera_M_contig106041.1308.1 vs. uniprot
Match: UPI0018CAA723 (DUF4272 domain-containing protein n=1 Tax=Aureivirga sp. CE67 TaxID=1788983 RepID=UPI0018CAA723)

HSP 1 Score: 99.8 bits (247), Expect = 1.810e-23
Identity = 41/63 (65.08%), Postives = 52/63 (82.54%), Query Frame = 1
Query:    1 EVIRLEDRFYCAHNAVRNAQVGRETVPNGLDPIVNGGVLHERRHVLTWAVSSGGRWDDTDLRT 189
            +++++ D FYC HNAVR+AQ+GR+TVPNG DP+ NGGV+HERRH LTW VS G  W+DTDL T
Sbjct:  305 DLMQMTDLFYCLHNAVRSAQMGRQTVPNGFDPMGNGGVIHERRHSLTWMVSKGTNWEDTDLST 367          
BLAST of mRNA_M-pyrifera_M_contig106041.1308.1 vs. uniprot
Match: UPI001E4E7097 (DUF4272 domain-containing protein n=1 Tax=Massilia antarctica TaxID=2765360 RepID=UPI001E4E7097)

HSP 1 Score: 95.1 bits (235), Expect = 2.960e-23
Identity = 41/63 (65.08%), Postives = 50/63 (79.37%), Query Frame = 1
Query:    1 EVIRLEDRFYCAHNAVRNAQVGRETVPNGLDPIVNGGVLHERRHVLTWAVSSGGRWDDTDLRT 189
            E I +E +FYCAHNA+R+AQ+G  TVP G DPIV+GG +HERRH LTWA++ G  WDDTDL T
Sbjct:  108 EAIYMEYKFYCAHNALRSAQLGGATVPAGFDPIVHGGAVHERRHSLTWALAPGHGWDDTDLNT 170          
BLAST of mRNA_M-pyrifera_M_contig106041.1308.1 vs. uniprot
Match: A0A517SCT2_9PLAN (Uncharacterized protein n=1 Tax=Caulifigura coniformis TaxID=2527983 RepID=A0A517SCT2_9PLAN)

HSP 1 Score: 95.9 bits (237), Expect = 5.290e-23
Identity = 41/62 (66.13%), Postives = 46/62 (74.19%), Query Frame = 1
Query:    4 VIRLEDRFYCAHNAVRNAQVGRETVPNGLDPIVNGGVLHERRHVLTWAVSSGGRWDDTDLRT 189
            VI L D FYCAHNAVR+AQVGR TVP G  P+ +GG +HERRH L W +S GG WDD DL T
Sbjct:  164 VIELTDYFYCAHNAVRSAQVGRRTVPKGFHPVADGGTVHERRHGLAWCLSPGGAWDDVDLST 225          
BLAST of mRNA_M-pyrifera_M_contig106041.1308.1 vs. uniprot
Match: A0A5N5ZHD2_9FLAO (DUF4272 domain-containing protein n=1 Tax=Kordia sp. TARA_039_SRF TaxID=2530203 RepID=A0A5N5ZHD2_9FLAO)

HSP 1 Score: 96.3 bits (238), Expect = 6.610e-23
Identity = 41/62 (66.13%), Postives = 49/62 (79.03%), Query Frame = 1
Query:    4 VIRLEDRFYCAHNAVRNAQVGRETVPNGLDPIVNGGVLHERRHVLTWAVSSGGRWDDTDLRT 189
            V+  ED FYC HNAVR+AQ+GR+TVP+  DP+VNGGV+HERRH LTW +S G  WD TDL T
Sbjct:  192 VMEKEDLFYCLHNAVRSAQLGRDTVPSSFDPMVNGGVIHERRHSLTWMLSKGVSWDQTDLST 253          
BLAST of mRNA_M-pyrifera_M_contig106041.1308.1 vs. uniprot
Match: UPI001300BA57 (DUF4272 domain-containing protein n=1 Tax=Winogradskyella tangerina TaxID=2023240 RepID=UPI001300BA57)

HSP 1 Score: 96.3 bits (238), Expect = 7.690e-23
Identity = 41/58 (70.69%), Postives = 47/58 (81.03%), Query Frame = 1
Query:   16 EDRFYCAHNAVRNAQVGRETVPNGLDPIVNGGVLHERRHVLTWAVSSGGRWDDTDLRT 189
            ED FYC HNAVR+AQ GRETVP G DP+ NGGV+HERRH LTW +S G +W+DTDL T
Sbjct:  204 EDLFYCLHNAVRSAQFGRETVPAGFDPMGNGGVIHERRHSLTWMLSDGTKWEDTDLST 261          
BLAST of mRNA_M-pyrifera_M_contig106041.1308.1 vs. uniprot
Match: A0A7C1QQN9_9FLAO (Uncharacterized protein n=2 Tax=root TaxID=1 RepID=A0A7C1QQN9_9FLAO)

HSP 1 Score: 90.5 bits (223), Expect = 1.050e-22
Identity = 39/58 (67.24%), Postives = 47/58 (81.03%), Query Frame = 1
Query:   16 EDRFYCAHNAVRNAQVGRETVPNGLDPIVNGGVLHERRHVLTWAVSSGGRWDDTDLRT 189
            ED  YC HNAVR+AQ+G ETVPNG DP+ NGGV+HERRH LT+ VS+G  W++TDL T
Sbjct:    4 EDLLYCLHNAVRSAQMGSETVPNGFDPMGNGGVIHERRHSLTFMVSNGDSWENTDLST 61          
BLAST of mRNA_M-pyrifera_M_contig106041.1308.1 vs. uniprot
Match: UPI0016525673 (DUF4272 domain-containing protein n=1 Tax=Massilia genomosp. 1 TaxID=2609280 RepID=UPI0016525673)

HSP 1 Score: 98.2 bits (243), Expect = 1.100e-22
Identity = 42/62 (67.74%), Postives = 49/62 (79.03%), Query Frame = 1
Query:    4 VIRLEDRFYCAHNAVRNAQVGRETVPNGLDPIVNGGVLHERRHVLTWAVSSGGRWDDTDLRT 189
            VI +E RFYCAHNAVR+AQ+G  TVP G DPI +GG +HERRH LTWA++ G  WDDTDL T
Sbjct:  357 VIEMEYRFYCAHNAVRSAQMGATTVPAGFDPIAHGGAVHERRHALTWALAPGDEWDDTDLST 418          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig106041.1308.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001F1ACD258.500e-2466.67DUF4272 domain-containing protein n=1 Tax=Tenaciba... [more]
A0A2D4YAV9_9FLAO1.220e-2366.67Uncharacterized protein n=1 Tax=Flavobacteriaceae ... [more]
A0A0T0M6D6_9FLAO1.690e-2370.69Uncharacterized protein n=2 Tax=Chryseobacterium T... [more]
UPI0018CAA7231.810e-2365.08DUF4272 domain-containing protein n=1 Tax=Aureivir... [more]
UPI001E4E70972.960e-2365.08DUF4272 domain-containing protein n=1 Tax=Massilia... [more]
A0A517SCT2_9PLAN5.290e-2366.13Uncharacterized protein n=1 Tax=Caulifigura conifo... [more]
A0A5N5ZHD2_9FLAO6.610e-2366.13DUF4272 domain-containing protein n=1 Tax=Kordia s... [more]
UPI001300BA577.690e-2370.69DUF4272 domain-containing protein n=1 Tax=Winograd... [more]
A0A7C1QQN9_9FLAO1.050e-2267.24Uncharacterized protein n=2 Tax=root TaxID=1 RepID... [more]
UPI00165256731.100e-2267.74DUF4272 domain-containing protein n=1 Tax=Massilia... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig106041contigM-pyrifera_M_contig106041:3..194 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score93.2
Seed ortholog evalue4.7e-17
Seed eggNOG ortholog1249997.JHZW01000002_gene392
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Domain of unknown function (DUF4272)
EggNOG OGs1IEGC@117743,2BPCN@1,2PHUI@252356,32I4P@2,4PE2I@976
COG Functional cat.S
Best tax levelMaribacter
Best eggNOG OGNA|NA|NA
Exons1
Model size192
Cds size192
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815570.3188443-CDS-M-pyrifera_M_contig106041:2..1941622815570.3188443-CDS-M-pyrifera_M_contig106041:2..194Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig106041 3..194 +
1692277468.5170364-CDS-M-pyrifera_M_contig106041:2..1941692277468.5170364-CDS-M-pyrifera_M_contig106041:2..194Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig106041 3..194 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig106041.1308.1prot_M-pyrifera_M_contig106041.1308.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig106041 3..194 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig106041.1308.1

>prot_M-pyrifera_M_contig106041.1308.1 ID=prot_M-pyrifera_M_contig106041.1308.1|Name=mRNA_M-pyrifera_M_contig106041.1308.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=64bp
EVIRLEDRFYCAHNAVRNAQVGRETVPNGLDPIVNGGVLHERRHVLTWAV
SSGGRWDDTDLRT*
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mRNA from alignment at M-pyrifera_M_contig106041:3..194+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig106041.1308.1 ID=mRNA_M-pyrifera_M_contig106041.1308.1|Name=mRNA_M-pyrifera_M_contig106041.1308.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=192bp|location=Sequence derived from alignment at M-pyrifera_M_contig106041:3..194+ (Macrocystis pyrifera P11B4 male)
GAAGTCATTAGACTGGAAGACAGGTTCTATTGCGCACACAACGCGGTTCG AAATGCTCAAGTTGGTCGTGAGACGGTTCCCAACGGATTGGATCCCATCG TCAACGGGGGTGTCCTTCACGAGCGGCGGCATGTGTTGACTTGGGCAGTC TCTTCCGGGGGCCGCTGGGATGACACCGATCTCCGCACTTAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig106041:3..194+

>mRNA_M-pyrifera_M_contig106041.1308.1 ID=mRNA_M-pyrifera_M_contig106041.1308.1|Name=mRNA_M-pyrifera_M_contig106041.1308.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=384bp|location=Sequence derived from alignment at M-pyrifera_M_contig106041:3..194+ (Macrocystis pyrifera P11B4 male)
GAAGTCATTAGACTGGAAGACAGGTTCTATTGCGCACACAACGCGGTTCG
AAATGCTCAAGTTGGTCGTGAGACGGTTCCCAACGGATTGGATCCCATCG
TCAACGGGGGTGTCCTTCACGAGCGGCGGCATGTGTTGACTTGGGCAGTC
TCTTCCGGGGGCCGCTGGGATGACACCGATCTCCGCACTTAAGAAGTCAT
TAGACTGGAAGACAGGTTCTATTGCGCACACAACGCGGTTCGAAATGCTC
AAGTTGGTCGTGAGACGGTTCCCAACGGATTGGATCCCATCGTCAACGGG
GGTGTCCTTCACGAGCGGCGGCATGTGTTGACTTGGGCAGTCTCTTCCGG
GGGCCGCTGGGATGACACCGATCTCCGCACTTAA
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