mRNA_M-pyrifera_M_contig106035.1305.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig106035.1305.1
Unique NamemRNA_M-pyrifera_M_contig106035.1305.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig106035.1305.1 vs. uniprot
Match: A0A2P2K250_RHIMU (Pre-mRNA-splicing factor 38 n=1 Tax=Rhizophora mucronata TaxID=61149 RepID=A0A2P2K250_RHIMU)

HSP 1 Score: 143 bits (361), Expect = 1.080e-42
Identity = 62/88 (70.45%), Postives = 79/88 (89.77%), Query Frame = 1 
Query:    4 NTTDPLAQSVHGTNPQNLVEKILRLRVYNSRYWKEKCFALTAETVVDRALKLTHVGGTFGGNRQPTPFMCLALKLLQLQPEKEIMVEF 267
            N TDP A+S+ GTNPQNLVEKILR ++Y + YWKE+CF LTAET+VD+A++L H+GGTFGGNR+PTPFMCL +K+LQ+QPEK+I+VEF
Sbjct:    3 NRTDPAAKSIRGTNPQNLVEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHLGGTFGGNRKPTPFMCLVMKMLQIQPEKDIVVEF 90
[Close]
BLAST of mRNA_M-pyrifera_M_contig106035.1305.1 vs. uniprot
Match: D8T1B4_SELML (Pre-mRNA-splicing factor 38 n=2 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8T1B4_SELML)

HSP 1 Score: 144 bits (363), Expect = 3.150e-42
Identity = 64/88 (72.73%), Postives = 80/88 (90.91%), Query Frame = 1 
Query:    4 NTTDPLAQSVHGTNPQNLVEKILRLRVYNSRYWKEKCFALTAETVVDRALKLTHVGGTFGGNRQPTPFMCLALKLLQLQPEKEIMVEF 267
            N TDP A+SVHGTNPQNLVEKILR +++ S +WKE+CFALTAET+VD+A++L H+GGT+GGNR+ TPFMCL LK+LQ+QPEKEI+VEF
Sbjct:    3 NRTDPAAKSVHGTNPQNLVEKILREKIHQSSFWKEQCFALTAETLVDKAMELDHIGGTYGGNRKATPFMCLTLKMLQIQPEKEIVVEF 90
[Close]
BLAST of mRNA_M-pyrifera_M_contig106035.1305.1 vs. uniprot
Match: A0A392QKP4_9FABA (Pre-mRNA-splicing factor 38 (Fragment) n=1 Tax=Trifolium medium TaxID=97028 RepID=A0A392QKP4_9FABA)

HSP 1 Score: 143 bits (360), Expect = 3.850e-42
Identity = 61/88 (69.32%), Postives = 79/88 (89.77%), Query Frame = 1 
Query:    4 NTTDPLAQSVHGTNPQNLVEKILRLRVYNSRYWKEKCFALTAETVVDRALKLTHVGGTFGGNRQPTPFMCLALKLLQLQPEKEIMVEF 267
            N TDP A+S+ GTNPQNLVEKILR ++Y + YWKE+CF LTAET+VD+A++L H+GGT+GGNR+PTPFMCL +K+LQ+QPEKEI++EF
Sbjct:    6 NRTDPAAKSIRGTNPQNLVEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHLGGTYGGNRKPTPFMCLVMKMLQIQPEKEIVIEF 93
[Close]
BLAST of mRNA_M-pyrifera_M_contig106035.1305.1 vs. uniprot
Match: A0A6P5GTV5_ANACO (Pre-mRNA-splicing factor 38 n=1 Tax=Ananas comosus TaxID=4615 RepID=A0A6P5GTV5_ANACO)

HSP 1 Score: 146 bits (368), Expect = 8.010e-42
Identity = 63/88 (71.59%), Postives = 80/88 (90.91%), Query Frame = 1 
Query:    4 NTTDPLAQSVHGTNPQNLVEKILRLRVYNSRYWKEKCFALTAETVVDRALKLTHVGGTFGGNRQPTPFMCLALKLLQLQPEKEIMVEF 267
            N TDP A+S+HGTNPQNLVEKILR ++Y + YWKE+CF LTAET+VD+A++L H+GGTFGGNR+PTPFMCL +K+LQ+QPEK+I+VEF
Sbjct:    3 NRTDPSAKSIHGTNPQNLVEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHLGGTFGGNRKPTPFMCLVMKMLQIQPEKDIVVEF 90
[Close]
BLAST of mRNA_M-pyrifera_M_contig106035.1305.1 vs. uniprot
Match: A0A1D1Z5H8_9ARAE (Pre-mRNA-splicing factor 38 (Fragment) n=1 Tax=Anthurium amnicola TaxID=1678845 RepID=A0A1D1Z5H8_9ARAE)

HSP 1 Score: 147 bits (370), Expect = 1.240e-41
Identity = 64/88 (72.73%), Postives = 80/88 (90.91%), Query Frame = 1 
Query:    4 NTTDPLAQSVHGTNPQNLVEKILRLRVYNSRYWKEKCFALTAETVVDRALKLTHVGGTFGGNRQPTPFMCLALKLLQLQPEKEIMVEF 267
            N TDP A+S+HGTNPQNLVEKILR ++Y + YWKE+CF LTAET+VD+A++L H+GGTFGGNR+PTPFMCL LK+LQ+QPEK+I+VEF
Sbjct:    3 NRTDPSAKSIHGTNPQNLVEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHLGGTFGGNRKPTPFMCLVLKMLQIQPEKDIVVEF 90
[Close]
BLAST of mRNA_M-pyrifera_M_contig106035.1305.1 vs. uniprot
Match: A0A0V0GSG3_SOLCH (Pre-mRNA-splicing factor 38 (Fragment) n=1 Tax=Solanum chacoense TaxID=4108 RepID=A0A0V0GSG3_SOLCH)

HSP 1 Score: 142 bits (358), Expect = 1.340e-41
Identity = 61/88 (69.32%), Postives = 80/88 (90.91%), Query Frame = 1 
Query:    4 NTTDPLAQSVHGTNPQNLVEKILRLRVYNSRYWKEKCFALTAETVVDRALKLTHVGGTFGGNRQPTPFMCLALKLLQLQPEKEIMVEF 267
            N TDPLA+S+ GTNPQNLVEKILR ++Y + YWKE+CF LTAET+VD+A++L H+GGTFGGNR+P+PF+CL +K+LQ+QPEK+I+VEF
Sbjct:    3 NRTDPLAKSIRGTNPQNLVEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHLGGTFGGNRKPSPFICLVMKMLQIQPEKDIVVEF 90
[Close]
BLAST of mRNA_M-pyrifera_M_contig106035.1305.1 vs. uniprot
Match: A0A1Q3D6I5_CEPFO (Pre-mRNA-splicing factor 38 (Fragment) n=1 Tax=Cephalotus follicularis TaxID=3775 RepID=A0A1Q3D6I5_CEPFO)

HSP 1 Score: 148 bits (373), Expect = 1.470e-41
Identity = 62/88 (70.45%), Postives = 81/88 (92.05%), Query Frame = 1 
Query:    4 NTTDPLAQSVHGTNPQNLVEKILRLRVYNSRYWKEKCFALTAETVVDRALKLTHVGGTFGGNRQPTPFMCLALKLLQLQPEKEIMVEF 267
            N TDP+A+S+HGTNPQNL+EKILR ++Y + YWKE+CF LTAET+VD+A++L H+GGTFGGNR+PTPFMCL +K+LQ+QPEKEI++EF
Sbjct:    3 NRTDPMAKSIHGTNPQNLIEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHLGGTFGGNRKPTPFMCLVMKMLQIQPEKEIVIEF 90
[Close]
BLAST of mRNA_M-pyrifera_M_contig106035.1305.1 vs. uniprot
Match: A0A1R3KK07_9ROSI (Pre-mRNA-splicing factor 38 n=1 Tax=Corchorus olitorius TaxID=93759 RepID=A0A1R3KK07_9ROSI)

HSP 1 Score: 145 bits (366), Expect = 2.670e-41
Identity = 62/88 (70.45%), Postives = 80/88 (90.91%), Query Frame = 1 
Query:    4 NTTDPLAQSVHGTNPQNLVEKILRLRVYNSRYWKEKCFALTAETVVDRALKLTHVGGTFGGNRQPTPFMCLALKLLQLQPEKEIMVEF 267
            N TDP A+S+ GTNPQNLVEKILR ++Y S+YWKE+CF LTAET+VD+A++L H+GGT+GGNR+PTPFMCL +K+LQ+QPEK+I+VEF
Sbjct:    3 NRTDPAAKSIRGTNPQNLVEKILRSKIYQSKYWKEQCFGLTAETLVDKAMELKHIGGTYGGNRKPTPFMCLVMKMLQIQPEKDIVVEF 90
[Close]
BLAST of mRNA_M-pyrifera_M_contig106035.1305.1 vs. uniprot
Match: A0A0E0IG02_ORYNI (Pre-mRNA-splicing factor 38 n=1 Tax=Oryza nivara TaxID=4536 RepID=A0A0E0IG02_ORYNI)

HSP 1 Score: 147 bits (370), Expect = 2.710e-41
Identity = 63/88 (71.59%), Postives = 81/88 (92.05%), Query Frame = 1 
Query:    4 NTTDPLAQSVHGTNPQNLVEKILRLRVYNSRYWKEKCFALTAETVVDRALKLTHVGGTFGGNRQPTPFMCLALKLLQLQPEKEIMVEF 267
            N TDPLA+S+HGTNPQNLVEKI+R ++Y S YWKE+CF LTAET+VD+A++L H GGT+GGNR+PTPF+CLALK+LQ+QP+K+I+VEF
Sbjct:    3 NRTDPLAKSIHGTNPQNLVEKIVRSKIYQSTYWKEQCFGLTAETLVDKAMELDHTGGTYGGNRKPTPFLCLALKMLQIQPDKDIVVEF 90
[Close]
BLAST of mRNA_M-pyrifera_M_contig106035.1305.1 vs. uniprot
Match: A0A835Q3Q8_VANPL (Pre-mRNA-splicing factor 38 n=1 Tax=Vanilla planifolia TaxID=51239 RepID=A0A835Q3Q8_VANPL)

HSP 1 Score: 145 bits (366), Expect = 3.690e-41
Identity = 62/88 (70.45%), Postives = 80/88 (90.91%), Query Frame = 1 
Query:    4 NTTDPLAQSVHGTNPQNLVEKILRLRVYNSRYWKEKCFALTAETVVDRALKLTHVGGTFGGNRQPTPFMCLALKLLQLQPEKEIMVEF 267
            N TDP A+S+HGTNPQNLVEKI+R ++Y + YWKE+CF LTAET+VD+A++L H+GGTFGGNR+PTPF+CL +K+LQ+QPEKEI+VEF
Sbjct:    3 NRTDPAAKSIHGTNPQNLVEKIVRSKIYQNTYWKEQCFGLTAETLVDKAMELDHLGGTFGGNRKPTPFLCLVMKMLQIQPEKEIVVEF 90
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig106035.1305.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2P2K250_RHIMU1.080e-4270.45Pre-mRNA-splicing factor 38 n=1 Tax=Rhizophora muc... [more]
D8T1B4_SELML3.150e-4272.73Pre-mRNA-splicing factor 38 n=2 Tax=Selaginella mo... [more]
A0A392QKP4_9FABA3.850e-4269.32Pre-mRNA-splicing factor 38 (Fragment) n=1 Tax=Tri... [more]
A0A6P5GTV5_ANACO8.010e-4271.59Pre-mRNA-splicing factor 38 n=1 Tax=Ananas comosus... [more]
A0A1D1Z5H8_9ARAE1.240e-4172.73Pre-mRNA-splicing factor 38 (Fragment) n=1 Tax=Ant... [more]
A0A0V0GSG3_SOLCH1.340e-4169.32Pre-mRNA-splicing factor 38 (Fragment) n=1 Tax=Sol... [more]
A0A1Q3D6I5_CEPFO1.470e-4170.45Pre-mRNA-splicing factor 38 (Fragment) n=1 Tax=Cep... [more]
A0A1R3KK07_9ROSI2.670e-4170.45Pre-mRNA-splicing factor 38 n=1 Tax=Corchorus olit... [more]
A0A0E0IG02_ORYNI2.710e-4171.59Pre-mRNA-splicing factor 38 n=1 Tax=Oryza nivara T... [more]
A0A835Q3Q8_VANPL3.690e-4170.45Pre-mRNA-splicing factor 38 n=1 Tax=Vanilla planif... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig106035contigM-pyrifera_M_contig106035:1..339 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score148.3
Seed ortholog evalue1.7e-33
Seed eggNOG ortholog4565.Traes_5BL_64564B1BB.1
KEGG koko:K12849
KEGG Pathwayko03040,map03040
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005681,GO:0032991,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0071011,GO:1990904
EggNOG free text desc.PRP38 family
EggNOG OGs37MJN@33090,3GESM@35493,3I8F4@38820,3KXJR@4447,KOG2889@1,KOG2889@2759
COG Functional cat.S
Best tax levelPoales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03041
Exons2
Model size267
Cds size267
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815570.1977513-CDS-M-pyrifera_M_contig106035:0..2101622815570.1977513-CDS-M-pyrifera_M_contig106035:0..210Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig106035 1..210 -
1692277468.461984-CDS-M-pyrifera_M_contig106035:0..2101692277468.461984-CDS-M-pyrifera_M_contig106035:0..210Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig106035 1..210 -
1622815570.214243-CDS-M-pyrifera_M_contig106035:282..3391622815570.214243-CDS-M-pyrifera_M_contig106035:282..339Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig106035 283..339 -
1692277468.474391-CDS-M-pyrifera_M_contig106035:282..3391692277468.474391-CDS-M-pyrifera_M_contig106035:282..339Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig106035 283..339 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig106035.1305.1prot_M-pyrifera_M_contig106035.1305.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig106035 1..339 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig106035.1305.1

>prot_M-pyrifera_M_contig106035.1305.1 ID=prot_M-pyrifera_M_contig106035.1305.1|Name=mRNA_M-pyrifera_M_contig106035.1305.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=89bp
MNTTDPLAQSVHGTNPQNLVEKILRLRVYNSRYWKEKCFALTAETVVDRA
LKLTHVGGTFGGNRQPTPFMCLALKLLQLQPEKEIMVEF
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mRNA from alignment at M-pyrifera_M_contig106035:1..339-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig106035.1305.1 ID=mRNA_M-pyrifera_M_contig106035.1305.1|Name=mRNA_M-pyrifera_M_contig106035.1305.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=339bp|location=Sequence derived from alignment at M-pyrifera_M_contig106035:1..339- (Macrocystis pyrifera P11B4 male)
ATGAATACAACAGATCCTCTTGCACAGTCTGTCCATGGGACCAACCCGCA
GAACCTGGTTCGTGTAGCGAAAGCGCTTGTTTCTTGGGCTGCTTCGTGCC
GTGCTGACGTGTATGCGTTGTTGTCGCAGGTGGAGAAGATTCTGCGACTG
CGTGTATACAACAGCAGGTATTGGAAGGAGAAGTGTTTTGCTCTCACTGC
CGAGACGGTGGTTGACAGGGCTCTGAAACTGACGCACGTGGGCGGAACGT
TTGGAGGCAATCGACAGCCCACGCCGTTCATGTGCCTGGCGCTGAAGCTT
CTACAGCTGCAGCCAGAGAAGGAGATCATGGTTGAGTTC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig106035:1..339-

>mRNA_M-pyrifera_M_contig106035.1305.1 ID=mRNA_M-pyrifera_M_contig106035.1305.1|Name=mRNA_M-pyrifera_M_contig106035.1305.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=534bp|location=Sequence derived from alignment at M-pyrifera_M_contig106035:1..339- (Macrocystis pyrifera P11B4 male)
ATGAATACAACAGATCCTCTTGCACAGTCTGTCCATGGGACCAACCCGCA
GAACCTGATGAATACAACAGATCCTCTTGCACAGTCTGTCCATGGGACCA
ACCCGCAGAACCTGGTGGAGAAGATTCTGCGACTGCGTGTATACAACAGC
AGGTATTGGAAGGAGAAGTGTTTTGCTCTCACTGCCGAGACGGTGGTTGA
CAGGGCTCTGAAACTGACGCACGTGGGCGGAACGTTTGGAGGCAATCGAC
AGCCCACGCCGTTCATGTGCCTGGCGCTGAAGCTTCTACAGCTGCAGCCA
GAGAAGGAGATCATGGTTGAGTTCGTGGAGAAGATTCTGCGACTGCGTGT
ATACAACAGCAGGTATTGGAAGGAGAAGTGTTTTGCTCTCACTGCCGAGA
CGGTGGTTGACAGGGCTCTGAAACTGACGCACGTGGGCGGAACGTTTGGA
GGCAATCGACAGCCCACGCCGTTCATGTGCCTGGCGCTGAAGCTTCTACA
GCTGCAGCCAGAGAAGGAGATCATGGTTGAGTTC
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