mRNA_M-pyrifera_M_contig106034.1304.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig106034.1304.1
Unique NamemRNA_M-pyrifera_M_contig106034.1304.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig106034.1304.1 vs. uniprot
Match: A0A388PM67_9BACT (Uncharacterized protein YbeQ n=1 Tax=Opitutae bacterium TaxID=2026771 RepID=A0A388PM67_9BACT)

HSP 1 Score: 53.1 bits (126), Expect = 6.940e-6
Identity = 31/65 (47.69%), Postives = 38/65 (58.46%), Query Frame = 1 
Query:   31 WKELLARAEAGDAEAQYNAGGRLLGGKFGAPLDLEAAERWFDRAADAGHAMGTLLAGMC--KGAF 219
            W  L+A+AEAGDAEAQ++    +L G F  P +   A RWF RAAD GH    +  G C  KG F
Sbjct:   64 WPALVAKAEAGDAEAQFHRAMGMLTGLF-EPANPAQARRWFLRAADQGHGRALIALGECESKGEF 127
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BLAST of mRNA_M-pyrifera_M_contig106034.1304.1 vs. uniprot
Match: A0A2M8UFG3_9PROT (Uncharacterized protein n=1 Tax=Ferrovibrio sp. TaxID=1917215 RepID=A0A2M8UFG3_9PROT)

HSP 1 Score: 53.1 bits (126), Expect = 7.610e-6
Identity = 42/95 (44.21%), Postives = 50/95 (52.63%), Query Frame = 1 
Query:   40 LLARAEAGDAEAQYNAGGRLLGGKFGAPLDLEAAERWFDRAADAGH--AMGTLLAGMCKGAFAMGRPPDAQEFWRLVLRAAELGVAEGAEWLRVA 318
            LL RAEAG+AEAQY  G  +     G P D  AA  WF +AA   H  A+G+L   +  GA   G PPDA    R + RA ELG  E   W  +A
Sbjct:   53 LLRRAEAGNAEAQYQVG-VIHQFSLGVPRDDAAARGWFAKAAAQDHPRALGSLGYMLIAGA---GGPPDAAGAERALRRAGELG--EATAWANLA 141
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig106034.1304.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A388PM67_9BACT6.940e-647.69Uncharacterized protein YbeQ n=1 Tax=Opitutae bact... [more]
A0A2M8UFG3_9PROT7.610e-644.21Uncharacterized protein n=1 Tax=Ferrovibrio sp. Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig106034contigM-pyrifera_M_contig106034:107..427 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size321
Cds size321
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815570.1593895-CDS-M-pyrifera_M_contig106034:106..4271622815570.1593895-CDS-M-pyrifera_M_contig106034:106..427Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig106034 107..427 +
1692277468.4523294-CDS-M-pyrifera_M_contig106034:106..4271692277468.4523294-CDS-M-pyrifera_M_contig106034:106..427Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig106034 107..427 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig106034.1304.1prot_M-pyrifera_M_contig106034.1304.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig106034 107..427 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig106034.1304.1

>prot_M-pyrifera_M_contig106034.1304.1 ID=prot_M-pyrifera_M_contig106034.1304.1|Name=mRNA_M-pyrifera_M_contig106034.1304.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=107bp
HASPEHTREPWKELLARAEAGDAEAQYNAGGRLLGGKFGAPLDLEAAERW
FDRAADAGHAMGTLLAGMCKGAFAMGRPPDAQEFWRLVLRAAELGVAEGA
EWLRVAY
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mRNA from alignment at M-pyrifera_M_contig106034:107..427+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig106034.1304.1 ID=mRNA_M-pyrifera_M_contig106034.1304.1|Name=mRNA_M-pyrifera_M_contig106034.1304.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=321bp|location=Sequence derived from alignment at M-pyrifera_M_contig106034:107..427+ (Macrocystis pyrifera P11B4 male)
CATGCAAGCCCCGAACACACACGCGAGCCGTGGAAGGAGCTGCTGGCGCG
CGCCGAGGCGGGAGACGCGGAGGCGCAGTACAACGCGGGCGGGCGGCTGC
TCGGAGGCAAGTTCGGCGCGCCGCTGGACCTGGAAGCGGCGGAACGGTGG
TTCGATCGCGCGGCTGATGCGGGGCACGCGATGGGCACGCTGCTGGCGGG
GATGTGCAAGGGCGCGTTCGCCATGGGCCGGCCGCCGGACGCGCAGGAGT
TCTGGCGCCTCGTGCTGCGGGCGGCGGAGCTGGGCGTGGCCGAAGGCGCT
GAATGGCTCCGCGTGGCTTAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig106034:107..427+

>mRNA_M-pyrifera_M_contig106034.1304.1 ID=mRNA_M-pyrifera_M_contig106034.1304.1|Name=mRNA_M-pyrifera_M_contig106034.1304.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=642bp|location=Sequence derived from alignment at M-pyrifera_M_contig106034:107..427+ (Macrocystis pyrifera P11B4 male)
CATGCAAGCCCCGAACACACACGCGAGCCGTGGAAGGAGCTGCTGGCGCG
CGCCGAGGCGGGAGACGCGGAGGCGCAGTACAACGCGGGCGGGCGGCTGC
TCGGAGGCAAGTTCGGCGCGCCGCTGGACCTGGAAGCGGCGGAACGGTGG
TTCGATCGCGCGGCTGATGCGGGGCACGCGATGGGCACGCTGCTGGCGGG
GATGTGCAAGGGCGCGTTCGCCATGGGCCGGCCGCCGGACGCGCAGGAGT
TCTGGCGCCTCGTGCTGCGGGCGGCGGAGCTGGGCGTGGCCGAAGGCGCT
GAATGGCTCCGCGTGGCTTACCATGCAAGCCCCGAACACACACGCGAGCC
GTGGAAGGAGCTGCTGGCGCGCGCCGAGGCGGGAGACGCGGAGGCGCAGT
ACAACGCGGGCGGGCGGCTGCTCGGAGGCAAGTTCGGCGCGCCGCTGGAC
CTGGAAGCGGCGGAACGGTGGTTCGATCGCGCGGCTGATGCGGGGCACGC
GATGGGCACGCTGCTGGCGGGGATGTGCAAGGGCGCGTTCGCCATGGGCC
GGCCGCCGGACGCGCAGGAGTTCTGGCGCCTCGTGCTGCGGGCGGCGGAG
CTGGGCGTGGCCGAAGGCGCTGAATGGCTCCGCGTGGCTTAC
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