mRNA_M-pyrifera_M_contig106032.1302.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig106032.1302.1
Unique NamemRNA_M-pyrifera_M_contig106032.1302.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig106032.1302.1 vs. uniprot
Match: UPI0015ACAE55 (GRB2-related adaptor protein 2-like n=1 Tax=Anguilla anguilla TaxID=7936 RepID=UPI0015ACAE55)

HSP 1 Score: 54.7 bits (130), Expect = 2.190e-7
Identity = 25/43 (58.14%), Postives = 33/43 (76.74%), Query Frame = 1
Query:   31 VNRVRALWDFKADREEQLPFSKGDVIVVLNQSDECPGWWYGEL 159
            V +VRAL+DF A+  ++LPFS GDVI VL++SD  P WW G+L
Sbjct:  179 VLQVRALYDFIAEEADELPFSAGDVIEVLDRSD--PSWWRGQL 219          
BLAST of mRNA_M-pyrifera_M_contig106032.1302.1 vs. uniprot
Match: G4TK11_SERID (Uncharacterized protein n=1 Tax=Serendipita indica (strain DSM 11827) TaxID=1109443 RepID=G4TK11_SERID)

HSP 1 Score: 53.1 bits (126), Expect = 1.140e-6
Identity = 21/47 (44.68%), Postives = 31/47 (65.96%), Query Frame = 1
Query:   31 VNRVRALWDFKADREEQLPFSKGDVIVVLNQSDECPGWWYGELDVDL 171
             +RV A++D+KA  E +L F++GDVI V+  S+E   WWYG    D+
Sbjct:  400 TSRVCAIYDYKAQNEGELTFARGDVITVIQPSEESTFWWYGATKNDV 446          
BLAST of mRNA_M-pyrifera_M_contig106032.1302.1 vs. uniprot
Match: UPI0015CFE07E (GRB2-related adapter protein 2b n=1 Tax=Electrophorus electricus TaxID=8005 RepID=UPI0015CFE07E)

HSP 1 Score: 52.8 bits (125), Expect = 1.340e-6
Identity = 24/41 (58.54%), Postives = 29/41 (70.73%), Query Frame = 1
Query:   37 RVRALWDFKADREEQLPFSKGDVIVVLNQSDECPGWWYGEL 159
            +V A +DFKA+  ++L FS GDVI VLNQSD C  WW G L
Sbjct:  218 QVMARYDFKAEEVDELTFSAGDVIEVLNQSDPC--WWMGRL 256          
BLAST of mRNA_M-pyrifera_M_contig106032.1302.1 vs. uniprot
Match: A0A443SDJ9_9ACAR (Arf-GAP with SH3 domain: ANK repeat and PH domain-containing protein 2-like protein n=1 Tax=Leptotrombidium deliense TaxID=299467 RepID=A0A443SDJ9_9ACAR)

HSP 1 Score: 52.8 bits (125), Expect = 1.560e-6
Identity = 20/49 (40.82%), Postives = 35/49 (71.43%), Query Frame = 1
Query:   16 DGSVEVNRVRALWDFKADREEQLPFSKGDVIVVLNQSDECPGWWYGELD 162
            DGS++  R RAL+D +ADRE++L F +G++IV++N+  +   W  G ++
Sbjct:  884 DGSMKPRRCRALYDCEADREDELAFKEGEIIVIINEKTDDEDWMEGVIE 932          
BLAST of mRNA_M-pyrifera_M_contig106032.1302.1 vs. uniprot
Match: A0A3S3NTK6_9ACAR (Arf-GAP with SH3 domain: ANK repeat and PH domain-containing protein 2-like protein n=1 Tax=Dinothrombium tinctorium TaxID=1965070 RepID=A0A3S3NTK6_9ACAR)

HSP 1 Score: 52.8 bits (125), Expect = 1.560e-6
Identity = 19/49 (38.78%), Postives = 36/49 (73.47%), Query Frame = 1
Query:   16 DGSVEVNRVRALWDFKADREEQLPFSKGDVIVVLNQSDECPGWWYGELD 162
            +GS+++ R RAL+D +ADR+++L F +G++IV+LN+  +   W  G ++
Sbjct:  973 EGSIKLRRCRALYDCEADRDDELAFKEGEIIVILNEKTDDEDWMEGMIE 1021          
BLAST of mRNA_M-pyrifera_M_contig106032.1302.1 vs. uniprot
Match: E0VXN3_PEDHC (130 kDa phosphatidylinositol 4,5-biphosphate-dependent ARF1 GTPase-activating protein, putative n=1 Tax=Pediculus humanus subsp. corporis TaxID=121224 RepID=E0VXN3_PEDHC)

HSP 1 Score: 52.8 bits (125), Expect = 1.560e-6
Identity = 22/46 (47.83%), Postives = 31/46 (67.39%), Query Frame = 1
Query:   31 VNRVRALWDFKADREEQLPFSKGDVIVVLNQSDECPGWWYGELDVD 168
            + RVRAL+D +ADRE++L F  GD+I+V NQ  +   W  G L+ D
Sbjct: 1069 MKRVRALYDCEADREDELSFKVGDIIIVTNQQTDDDNWIEGALETD 1114          
BLAST of mRNA_M-pyrifera_M_contig106032.1302.1 vs. uniprot
Match: A0A4W4E9A8_ELEEL (Growth factor receptor-bound protein 2-like n=2 Tax=Electrophorus electricus TaxID=8005 RepID=A0A4W4E9A8_ELEEL)

HSP 1 Score: 52.0 bits (123), Expect = 1.780e-6
Identity = 26/52 (50.00%), Postives = 35/52 (67.31%), Query Frame = 1
Query:    4 LRADDGSVEVNRVRALWDFKADREEQLPFSKGDVIVVLNQSDECPGWWYGEL 159
            L  D+ S+ + +V A +DFKA+  ++L FS GDVI VL+QSD C  WW G L
Sbjct:  145 LHTDEQSL-LPQVMARYDFKAEEVDELTFSAGDVIEVLDQSDPC--WWMGRL 193          
BLAST of mRNA_M-pyrifera_M_contig106032.1302.1 vs. uniprot
Match: A0A4W4EAK6_ELEEL (Growth factor receptor-bound protein 2-like n=1 Tax=Electrophorus electricus TaxID=8005 RepID=A0A4W4EAK6_ELEEL)

HSP 1 Score: 52.0 bits (123), Expect = 1.830e-6
Identity = 26/52 (50.00%), Postives = 35/52 (67.31%), Query Frame = 1
Query:    4 LRADDGSVEVNRVRALWDFKADREEQLPFSKGDVIVVLNQSDECPGWWYGEL 159
            L  D+ S+ + +V A +DFKA+  ++L FS GDVI VL+QSD C  WW G L
Sbjct:  148 LHTDEQSL-LPQVMARYDFKAEEVDELTFSAGDVIEVLDQSDPC--WWMGRL 196          
BLAST of mRNA_M-pyrifera_M_contig106032.1302.1 vs. uniprot
Match: A0A0B7A3J3_9EUPU (SH3 domain-containing protein n=1 Tax=Arion vulgaris TaxID=1028688 RepID=A0A0B7A3J3_9EUPU)

HSP 1 Score: 49.3 bits (116), Expect = 2.050e-6
Identity = 23/46 (50.00%), Postives = 31/46 (67.39%), Query Frame = 1
Query:   25 VEVNRVRALWDFKADREEQLPFSKGDVIVVLNQSDECPGWWYGELD 162
            +EV RVRA++DF A   ++L F KGD+I V  + DE   WW GEL+
Sbjct:    6 LEVQRVRAIFDFDAQGCDELGFHKGDIIKVTQKVDES--WWRGELN 49          
BLAST of mRNA_M-pyrifera_M_contig106032.1302.1 vs. uniprot
Match: T1L4C8_TETUR (SH3 domain-containing protein n=3 Tax=Tetranychus urticae TaxID=32264 RepID=T1L4C8_TETUR)

HSP 1 Score: 52.4 bits (124), Expect = 2.110e-6
Identity = 18/42 (42.86%), Postives = 31/42 (73.81%), Query Frame = 1
Query:   37 RVRALWDFKADREEQLPFSKGDVIVVLNQSDECPGWWYGELD 162
            + RA++D+KA  +++L   KGD+I++L++  E  GWW GEL+
Sbjct:   57 QARAIYDYKAQNDDELTIKKGDIIIILSKGVEDEGWWKGELN 98          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig106032.1302.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI0015ACAE552.190e-758.14GRB2-related adaptor protein 2-like n=1 Tax=Anguil... [more]
G4TK11_SERID1.140e-644.68Uncharacterized protein n=1 Tax=Serendipita indica... [more]
UPI0015CFE07E1.340e-658.54GRB2-related adapter protein 2b n=1 Tax=Electropho... [more]
A0A443SDJ9_9ACAR1.560e-640.82Arf-GAP with SH3 domain: ANK repeat and PH domain-... [more]
A0A3S3NTK6_9ACAR1.560e-638.78Arf-GAP with SH3 domain: ANK repeat and PH domain-... [more]
E0VXN3_PEDHC1.560e-647.83130 kDa phosphatidylinositol 4,5-biphosphate-depen... [more]
A0A4W4E9A8_ELEEL1.780e-650.00Growth factor receptor-bound protein 2-like n=2 Ta... [more]
A0A4W4EAK6_ELEEL1.830e-650.00Growth factor receptor-bound protein 2-like n=1 Ta... [more]
A0A0B7A3J3_9EUPU2.050e-650.00SH3 domain-containing protein n=1 Tax=Arion vulgar... [more]
T1L4C8_TETUR2.110e-642.86SH3 domain-containing protein n=3 Tax=Tetranychus ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig106032contigM-pyrifera_M_contig106032:162..332 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size171
Cds size171
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815570.0795527-CDS-M-pyrifera_M_contig106032:161..3321622815570.0795527-CDS-M-pyrifera_M_contig106032:161..332Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig106032 162..332 +
1692277468.4297035-CDS-M-pyrifera_M_contig106032:161..3321692277468.4297035-CDS-M-pyrifera_M_contig106032:161..332Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig106032 162..332 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig106032.1302.1prot_M-pyrifera_M_contig106032.1302.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig106032 162..332 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig106032.1302.1

>prot_M-pyrifera_M_contig106032.1302.1 ID=prot_M-pyrifera_M_contig106032.1302.1|Name=mRNA_M-pyrifera_M_contig106032.1302.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=57bp
SLRADDGSVEVNRVRALWDFKADREEQLPFSKGDVIVVLNQSDECPGWWY
GELDVDL
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mRNA from alignment at M-pyrifera_M_contig106032:162..332+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig106032.1302.1 ID=mRNA_M-pyrifera_M_contig106032.1302.1|Name=mRNA_M-pyrifera_M_contig106032.1302.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=171bp|location=Sequence derived from alignment at M-pyrifera_M_contig106032:162..332+ (Macrocystis pyrifera P11B4 male)
TCTCTCCGAGCAGACGACGGATCCGTGGAAGTGAACAGAGTGAGAGCTCT CTGGGATTTCAAGGCAGACAGAGAAGAGCAACTGCCGTTTTCCAAGGGAG ACGTAATCGTTGTGCTGAACCAGTCAGACGAGTGCCCTGGCTGGTGGTAT GGCGAGCTCGACGTCGACCTC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig106032:162..332+

>mRNA_M-pyrifera_M_contig106032.1302.1 ID=mRNA_M-pyrifera_M_contig106032.1302.1|Name=mRNA_M-pyrifera_M_contig106032.1302.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=342bp|location=Sequence derived from alignment at M-pyrifera_M_contig106032:162..332+ (Macrocystis pyrifera P11B4 male)
TCTCTCCGAGCAGACGACGGATCCGTGGAAGTGAACAGAGTGAGAGCTCT
CTGGGATTTCAAGGCAGACAGAGAAGAGCAACTGCCGTTTTCCAAGGGAG
ACGTAATCGTTGTGCTGAACCAGTCAGACGAGTGCCCTGGCTGGTGGTAT
GGCGAGCTCGACGTCGACCTCTCTCTCCGAGCAGACGACGGATCCGTGGA
AGTGAACAGAGTGAGAGCTCTCTGGGATTTCAAGGCAGACAGAGAAGAGC
AACTGCCGTTTTCCAAGGGAGACGTAATCGTTGTGCTGAACCAGTCAGAC
GAGTGCCCTGGCTGGTGGTATGGCGAGCTCGACGTCGACCTC
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