mRNA_M-pyrifera_M_contig106031.1301.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig106031.1301.1
Unique NamemRNA_M-pyrifera_M_contig106031.1301.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig106031.1301.1 vs. uniprot
Match: A0A2R5GNV9_9STRA (Uncharacterized protein n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GNV9_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 1.780e-16
Identity = 57/134 (42.54%), Postives = 74/134 (55.22%), Query Frame = 1
Query:   16 MALPSPD-TPPADESLMADRQQLEFLLSPEAKEYWRKLCPALHVGDSD-VQQYLSLGKAFFSDEAVGDYCSRLEA-------DGHFHMPALSLGL---EHLAP--ALARGVVSLVQHGWPASFIMLYDEVWAII 375
            M LPSP  T    E + AD Q +E L   E   YWRK+CP LHVG+ + VQ+     K     E V ++ ++ E        +G FHM    LGL   ++L    ALA GVV L+QHGWPASFI +YDE W ++
Sbjct:    4 MPLPSPKATGEVSEDMRADEQLMETL---EDAAYWRKVCPHLHVGEHERVQEAAQAAK-----ERVANWQTQAETKRGEFAENGFFHMTPQDLGLGEDDYLERIHALALGVVRLMQHGWPASFIFIYDEAWILV 129          
BLAST of mRNA_M-pyrifera_M_contig106031.1301.1 vs. uniprot
Match: A0A8J4DAU3_9CHLO (Uncharacterized protein n=1 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4DAU3_9CHLO)

HSP 1 Score: 78.6 bits (192), Expect = 3.270e-14
Identity = 46/143 (32.17%), Postives = 74/143 (51.75%), Query Frame = 1
Query:    4 FPRRMALPSPDTPPADESLMADRQQLEFLLSPEAKEYWRKLCPALHVGDSDVQQYLSLGKAFFSDEAVGDYCSRLEADGHFHMPALSLGLEHLAPALARGVVSLVQHGWPASFIMLYDEVWAIIDRVKDIMKTVSGNEVSLAV 432
            FPR+  LP P +P  +E   A  + +  L      EYW  +CP L VG       L + K   S +   D+  ++  +G F +    +        LA  +V+L+QHGWPA+F++++DEVWA+I+R   +M   +GN  ++ V
Sbjct:    8 FPRKANLPDPYSPCPNEKCHASTRNIRNL---SELEYWAAICPHLSVGGR-----LEINKKKRSKQNDEDFRRQMHDEGVFQVYPSEMQWPVDIHRLALNMVTLMQHGWPATFLLMFDEVWALIERASGLMVATTGNTCNMDV 142          
BLAST of mRNA_M-pyrifera_M_contig106031.1301.1 vs. uniprot
Match: A0A150H3R6_GONPE (Uncharacterized protein n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150H3R6_GONPE)

HSP 1 Score: 74.3 bits (181), Expect = 1.000e-12
Identity = 47/144 (32.64%), Postives = 71/144 (49.31%), Query Frame = 1
Query:    4 FPRRMALPSPDTPPADESLMADRQQLEFLLSPEAKEYWRKLCPALHVGDSDVQQYLSLGKAFFSDEAVGDYCSRLEADGHFHMPALSLGLEHLAPALARGVVSLVQHGWPASFIMLYDEVWAIIDRVKDIMKTVSG-NEVSLAV 432
            F +R+ LP P  P  DESL A  + L  L       YW  + P L  G S        GK       V  +  ++  +G F      L       A+A+ +V L++HGWPA+F+++YDE+W +I R  +++K  SG NE ++ V
Sbjct:   28 FRKRIELPDPSVPWEDESLHASTRNLGNL---SEAGYWAAVLPDLTAGTSKASAR-EAGKPCLPKGLVESFKEQMLTEGVFQASPQELQWGVDMDAMAQSMVRLMRHGWPATFLIMYDEIWTLIQRASELVKRTSGGNECNMDV 167          
BLAST of mRNA_M-pyrifera_M_contig106031.1301.1 vs. uniprot
Match: A0A813KAI5_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813KAI5_POLGL)

HSP 1 Score: 73.6 bits (179), Expect = 1.520e-12
Identity = 43/113 (38.05%), Postives = 61/113 (53.98%), Query Frame = 1
Query:  109 EYWRKLCPALHVGDSDVQQYLSLGKAFFSDEAVGDYC-SRLEADGHFHMPAL----------SLGLEHLAPALARGVVSLVQHGWPASFIMLYDEVWAIIDRVKDIMKTVSGN 414
            EYW  LCPALHVGD ++ + L+       D  + D C  R+  DG+F++ A           SL       ALA GV  L + GWPASF+++YDE W +  ++K+ M   +GN
Sbjct:   45 EYWAALCPALHVGDPEMAR-LAADSVLDVDPDLVDECRERMLLDGYFNIDAAFTPEEPESGRSLDWAVDVAALADGVKRLTEAGWPASFLLMYDEPWIMAHQLKNFMLMTTGN 156          
BLAST of mRNA_M-pyrifera_M_contig106031.1301.1 vs. uniprot
Match: A0A812WBR6_9DINO (Hypothetical protein n=1 Tax=Symbiodinium sp. CCMP2456 TaxID=1519616 RepID=A0A812WBR6_9DINO)

HSP 1 Score: 72.0 bits (175), Expect = 2.360e-12
Identity = 48/129 (37.21%), Postives = 64/129 (49.61%), Query Frame = 1
Query:   58 LMADRQQLEFLLSPEAKEYWRKLCPALHVGDSDVQQYLSLGKAFFSDEAVGDYCSRLEA----DGHFHMPALSLGLEHLAPALARGVVSLVQHGWPASFIMLYDEVWAIIDRVKDIMKTVSGNEVSLAV 432
            L A  Q  E + S     YWR+LCP LHV D   Q  + L +   S  AV D C  + A    +G   +    L        LA+GV+ L QHGWPA+FI LYDE WA+      +M+  +GN + + V
Sbjct:    5 LHASAQTQESIFSAS---YWRQLCPELHVEDKSFQAEV-LARDGRSVAAVSD-CREVRARILEEGFAALSPAQLSWTAPVGRLAQGVLQLEQHGWPATFIALYDEAWAMARDAGAVMREATGNSLCMDV 128          
BLAST of mRNA_M-pyrifera_M_contig106031.1301.1 vs. uniprot
Match: A0A813GZE3_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813GZE3_POLGL)

HSP 1 Score: 72.8 bits (177), Expect = 3.310e-12
Identity = 42/108 (38.89%), Postives = 55/108 (50.93%), Query Frame = 1
Query:  112 YWRKLCPALHVGDSDVQQY---LSLGKAFFSDEAVGDYCSRLEADGHFHMPALSLGLEHLAPALARGVVSLVQHGWPASFIMLYDEVWAIIDRVKDIMKTVSGNEVSL 426
            YWR+LCP LHV D   Q     L       S +   +   RL  +G   +    L       ALARGVV+L +HGW A+FI LYDE WA+      IM+  +GN +S+
Sbjct:   15 YWRQLCPELHVEDKAFQARVVALQAEAGASSPQDCAEVRRRLVEEGFAALEPAQLRWSVDVHALARGVVTLQEHGWAATFICLYDEAWAMAGDASRIMQLATGNSLSM 122          
BLAST of mRNA_M-pyrifera_M_contig106031.1301.1 vs. uniprot
Match: A0A812M9I3_9DINO (Hypothetical protein n=1 Tax=Symbiodinium sp. CCMP2592 TaxID=631055 RepID=A0A812M9I3_9DINO)

HSP 1 Score: 72.0 bits (175), Expect = 6.020e-12
Identity = 48/129 (37.21%), Postives = 64/129 (49.61%), Query Frame = 1
Query:   58 LMADRQQLEFLLSPEAKEYWRKLCPALHVGDSDVQQYLSLGKAFFSDEAVGDYCSRLEA----DGHFHMPALSLGLEHLAPALARGVVSLVQHGWPASFIMLYDEVWAIIDRVKDIMKTVSGNEVSLAV 432
            L A  Q  E + S     YWR+LCP LHV D   Q  + L +   S  AV D C  + A    +G   +    L        LA+GV+ L QHGWPA+FI LYDE WA+      +M+  +GN + + V
Sbjct:    5 LHASAQTQESIFSAS---YWRQLCPELHVEDKSFQAEV-LARDGRSVAAVSD-CREVRARILEEGFAALSPAQLSWTAPVGRLAQGVLQLEQHGWPATFIALYDEAWAMARDAGAVMREATGNSLCMDV 128          
BLAST of mRNA_M-pyrifera_M_contig106031.1301.1 vs. uniprot
Match: A0A812KFV5_9DINO (Hypothetical protein n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812KFV5_9DINO)

HSP 1 Score: 71.6 bits (174), Expect = 8.050e-12
Identity = 41/125 (32.80%), Postives = 65/125 (52.00%), Query Frame = 1
Query:   61 MADRQQLEFLLSPEAKEYWRKLCPALHVGDSDVQ-QYLSLGKAFFSDEAVGDYCSRLEADGHFHMPALSLGLEHLAPALARGVVSLVQHGWPASFIMLYDEVWAIIDRVKDIMKTVSGNEVSLAV 432
            MAD  + +   S  +  YWR++CP LHV D   Q + L+  ++  +     +  SR+  +G   +    L        LA+GV+ L +HGWPA+FI LYDE WA+      +M+  +GN + + V
Sbjct:    1 MADAAEAQREESIFSTSYWRQVCPELHVEDKAYQAEVLARDRSVAAVADCREVRSRILEEGFAALSPAQLSWTAPVGRLAQGVLQLEKHGWPATFIALYDEAWAMARDAGAVMREATGNSLCMDV 125          
BLAST of mRNA_M-pyrifera_M_contig106031.1301.1 vs. uniprot
Match: A0A835Y8E4_9CHLO (SET domain-containing protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A835Y8E4_9CHLO)

HSP 1 Score: 71.2 bits (173), Expect = 1.290e-11
Identity = 36/102 (35.29%), Postives = 60/102 (58.82%), Query Frame = 1
Query:  112 YWRKLCPALHVGDSDVQQYLSLGKAFFSDEAVGDYCSRLEADG--HFHMPALSLGLEHLAPALARGVVSLVQHGWPASFIMLYDEVWAIIDRVKDIMKTVSG 411
            YW+K+CP LH+G     + L   K     + + D   +++++G   F    ++ G++     LA  +V L+QHGWP+ F++L+DEVWA+I R   +M +VSG
Sbjct:  682 YWQKVCPELHIGGKLAVKPLPKPK-----DVITDARKQIDSEGVVQFAPSDMAWGVD--VDGLAHSLVRLMQHGWPSPFLVLFDEVWALIHRASSLMSSVSG 776          
BLAST of mRNA_M-pyrifera_M_contig106031.1301.1 vs. uniprot
Match: A8IBM5_CHLRE (Predicted protein n=1 Tax=Chlamydomonas reinhardtii TaxID=3055 RepID=A8IBM5_CHLRE)

HSP 1 Score: 70.5 bits (171), Expect = 2.340e-11
Identity = 45/143 (31.47%), Postives = 65/143 (45.45%), Query Frame = 1
Query:    4 FPRRMALPSPDTPPADESLMADRQQLEFLLSPEAKEYWRKLCPALHVGDSDVQQYLSLGKAFFSDEAVGDYCSRLEADGHFHMPALSLGLEHLAPALARGVVSLVQHGWPASFIMLYDEVWAIIDRVKDIMKTVSGNEVSLAV 432
            FPRR  LP P TP  D+ L+   + LE L  P    YW +LCP L V     +      K  +  E V D   ++  +G                        +VQ GWPASF+++YDEVWA++ +   +M   +GN  ++ V
Sbjct:    8 FPRRANLPDPKTPCPDQELLMATRNLENLADPS---YWARLCPELSVSG---KLGTKAAKKKWGKEVVKDAREQVLTEG------------------------VVQAGWPASFLIMYDEVWALVQQASSLMAGATGNACNMDV 120          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig106031.1301.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 22
Match NameE-valueIdentityDescription
A0A2R5GNV9_9STRA1.780e-1642.54Uncharacterized protein n=1 Tax=Hondaea fermentalg... [more]
A0A8J4DAU3_9CHLO3.270e-1432.17Uncharacterized protein n=1 Tax=Volvox reticulifer... [more]
A0A150H3R6_GONPE1.000e-1232.64Uncharacterized protein n=1 Tax=Gonium pectorale T... [more]
A0A813KAI5_POLGL1.520e-1238.05Hypothetical protein n=1 Tax=Polarella glacialis T... [more]
A0A812WBR6_9DINO2.360e-1237.21Hypothetical protein n=1 Tax=Symbiodinium sp. CCMP... [more]
A0A813GZE3_POLGL3.310e-1238.89Hypothetical protein n=1 Tax=Polarella glacialis T... [more]
A0A812M9I3_9DINO6.020e-1237.21Hypothetical protein n=1 Tax=Symbiodinium sp. CCMP... [more]
A0A812KFV5_9DINO8.050e-1232.80Hypothetical protein n=1 Tax=Symbiodinium natans T... [more]
A0A835Y8E4_9CHLO1.290e-1135.29SET domain-containing protein n=1 Tax=Edaphochlamy... [more]
A8IBM5_CHLRE2.340e-1131.47Predicted protein n=1 Tax=Chlamydomonas reinhardti... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig106031contigM-pyrifera_M_contig106031:70..501 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score81.3
Seed ortholog evalue4.2e-13
Seed eggNOG ortholog296587.XP_002505708.1
Hectar predicted targeting categoryother localisation
EggNOG OGs2CY3Y@1,2S1U9@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size432
Cds size432
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815570.0378-CDS-M-pyrifera_M_contig106031:69..5011622815570.0378-CDS-M-pyrifera_M_contig106031:69..501Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig106031 70..501 -
1692277468.4192948-CDS-M-pyrifera_M_contig106031:69..5011692277468.4192948-CDS-M-pyrifera_M_contig106031:69..501Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig106031 70..501 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig106031.1301.1prot_M-pyrifera_M_contig106031.1301.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig106031 70..501 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig106031.1301.1

>prot_M-pyrifera_M_contig106031.1301.1 ID=prot_M-pyrifera_M_contig106031.1301.1|Name=mRNA_M-pyrifera_M_contig106031.1301.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=144bp
MFPRRMALPSPDTPPADESLMADRQQLEFLLSPEAKEYWRKLCPALHVGD
SDVQQYLSLGKAFFSDEAVGDYCSRLEADGHFHMPALSLGLEHLAPALAR
GVVSLVQHGWPASFIMLYDEVWAIIDRVKDIMKTVSGNEVSLAV
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mRNA from alignment at M-pyrifera_M_contig106031:70..501-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig106031.1301.1 ID=mRNA_M-pyrifera_M_contig106031.1301.1|Name=mRNA_M-pyrifera_M_contig106031.1301.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=432bp|location=Sequence derived from alignment at M-pyrifera_M_contig106031:70..501- (Macrocystis pyrifera P11B4 male)
ATGTTTCCGCGGCGCATGGCGCTGCCCAGCCCCGACACACCGCCAGCAGA CGAGAGTCTCATGGCCGACCGCCAACAGCTGGAGTTTCTCCTCTCTCCAG AGGCGAAGGAGTACTGGAGAAAGCTCTGCCCCGCGCTGCACGTGGGCGAC AGCGACGTGCAGCAATACCTCTCCTTGGGCAAGGCCTTCTTCTCCGACGA GGCAGTGGGAGACTATTGCAGCCGCCTGGAGGCAGACGGGCACTTCCACA TGCCTGCGCTCTCCCTCGGTCTGGAGCACTTGGCCCCTGCGTTGGCGCGG GGTGTGGTGTCTCTTGTGCAGCACGGCTGGCCGGCCAGCTTCATCATGCT CTACGACGAAGTGTGGGCCATCATCGACAGGGTCAAGGACATCATGAAGA CCGTCTCCGGAAACGAGGTAAGCCTCGCGGTT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig106031:70..501-

>mRNA_M-pyrifera_M_contig106031.1301.1 ID=mRNA_M-pyrifera_M_contig106031.1301.1|Name=mRNA_M-pyrifera_M_contig106031.1301.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=864bp|location=Sequence derived from alignment at M-pyrifera_M_contig106031:70..501- (Macrocystis pyrifera P11B4 male)
ATGTTTCCGCGGCGCATGGCGCTGCCCAGCCCCGACACACCGCCAGCAGA
CGAGAGTCTCATGGCCGACCGCCAACAGCTGGAGTTTCTCCTCTCTCCAG
AGGCGAAGGAGTACTGGAGAAAGCTCTGCCCCGCGCTGCACGTGGGCGAC
AGCGACGTGCAGCAATACCTCTCCTTGGGCAAGGCCTTCTTCTCCGACGA
GGCAGTGGGAGACTATTGCAGCCGCCTGGAGGCAGACGGGCACTTCCACA
TGCCTGCGCTCTCCCTCGGTCTGGAGCACTTGGCCCCTGCGTTGGCGCGG
GGTGTGGTGTCTCTTGTGCAGCACGGCTGGCCGGCCAGCTTCATCATGCT
CTACGACGAAGTGTGGGCCATCATCGACAGGGTCAAGGACATCATGAAGA
CCGTCTCCGGAAACGAGGTAAGCCTCGCGGTTATGTTTCCGCGGCGCATG
GCGCTGCCCAGCCCCGACACACCGCCAGCAGACGAGAGTCTCATGGCCGA
CCGCCAACAGCTGGAGTTTCTCCTCTCTCCAGAGGCGAAGGAGTACTGGA
GAAAGCTCTGCCCCGCGCTGCACGTGGGCGACAGCGACGTGCAGCAATAC
CTCTCCTTGGGCAAGGCCTTCTTCTCCGACGAGGCAGTGGGAGACTATTG
CAGCCGCCTGGAGGCAGACGGGCACTTCCACATGCCTGCGCTCTCCCTCG
GTCTGGAGCACTTGGCCCCTGCGTTGGCGCGGGGTGTGGTGTCTCTTGTG
CAGCACGGCTGGCCGGCCAGCTTCATCATGCTCTACGACGAAGTGTGGGC
CATCATCGACAGGGTCAAGGACATCATGAAGACCGTCTCCGGAAACGAGG
TAAGCCTCGCGGTT
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