mRNA_M-pyrifera_M_contig106020.1294.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig106020.1294.1
Unique NamemRNA_M-pyrifera_M_contig106020.1294.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig106020.1294.1 vs. uniprot
Match: UPI001C6A3B25 (Lrp/AsnC family transcriptional regulator n=1 Tax=Hoeflea sp. WL0058 TaxID=2865987 RepID=UPI001C6A3B25)

HSP 1 Score: 84.0 bits (206), Expect = 2.730e-19
Identity = 40/46 (86.96%), Postives = 44/46 (95.65%), Query Frame = 1 
Query:    1 YDAFYQKLIQKIEIRDVSSSFAMEQIKYTTELPLDYMVLDASRSGD 138
            YDAFY++LIQKIEIRDVSSSFAMEQIK+TTELPLDYM L+ASR GD
Sbjct:  116 YDAFYKRLIQKIEIRDVSSSFAMEQIKFTTELPLDYMQLEASRGGD 161
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BLAST of mRNA_M-pyrifera_M_contig106020.1294.1 vs. uniprot
Match: UPI0010AB1FAC (Lrp/AsnC family transcriptional regulator n=1 Tax=Nitratireductor sp. XY-223 TaxID=2561926 RepID=UPI0010AB1FAC)

HSP 1 Score: 83.2 bits (204), Expect = 5.730e-19
Identity = 39/46 (84.78%), Postives = 44/46 (95.65%), Query Frame = 1 
Query:    1 YDAFYQKLIQKIEIRDVSSSFAMEQIKYTTELPLDYMVLDASRSGD 138
            YDAFYQ+LI+KIEIRDVSSSFAMEQIKYTTELPLDY+VLD SR+ +
Sbjct:  116 YDAFYQRLIKKIEIRDVSSSFAMEQIKYTTELPLDYLVLDGSRTSE 161
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BLAST of mRNA_M-pyrifera_M_contig106020.1294.1 vs. uniprot
Match: A0A6A5L4C4_LUPAL (AsnC_trans_reg domain-containing protein n=1 Tax=Lupinus albus TaxID=3870 RepID=A0A6A5L4C4_LUPAL)

HSP 1 Score: 80.9 bits (198), Expect = 1.680e-18
Identity = 38/46 (82.61%), Postives = 43/46 (93.48%), Query Frame = 1 
Query:    1 YDAFYQKLIQKIEIRDVSSSFAMEQIKYTTELPLDYMVLDASRSGD 138
            YDAFY++LI KIEIRDVSS+FAMEQIKYTTELPLDYMVLD  +SG+
Sbjct:   76 YDAFYKRLIAKIEIRDVSSAFAMEQIKYTTELPLDYMVLDNQKSGE 121
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BLAST of mRNA_M-pyrifera_M_contig106020.1294.1 vs. uniprot
Match: A0A8J7R3C0_9HYPH (Lrp/AsnC family transcriptional regulator n=1 Tax=Tianweitania sediminis TaxID=1502156 RepID=A0A8J7R3C0_9HYPH)

HSP 1 Score: 81.3 bits (199), Expect = 3.170e-18
Identity = 39/46 (84.78%), Postives = 42/46 (91.30%), Query Frame = 1 
Query:    1 YDAFYQKLIQKIEIRDVSSSFAMEQIKYTTELPLDYMVLDASRSGD 138
            YDAFY++LI KIEIRDVSSSFAMEQIKYTTELPLDYMVLD  RS +
Sbjct:  116 YDAFYKRLIAKIEIRDVSSSFAMEQIKYTTELPLDYMVLDTPRSAE 161
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BLAST of mRNA_M-pyrifera_M_contig106020.1294.1 vs. uniprot
Match: A0A0D5LT53_MAREN (ArsR family transcriptional regulator n=10 Tax=Martelella TaxID=293088 RepID=A0A0D5LT53_MAREN)

HSP 1 Score: 80.9 bits (198), Expect = 4.380e-18
Identity = 38/46 (82.61%), Postives = 44/46 (95.65%), Query Frame = 1 
Query:    1 YDAFYQKLIQKIEIRDVSSSFAMEQIKYTTELPLDYMVLDASRSGD 138
            YDAFY++LI KIEIRDVSSSFAMEQIK++T+LPLDYM LDA+RSGD
Sbjct:  116 YDAFYKRLIAKIEIRDVSSSFAMEQIKFSTQLPLDYMQLDAARSGD 161
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BLAST of mRNA_M-pyrifera_M_contig106020.1294.1 vs. uniprot
Match: A0A0Q6F8P2_9HYPH (ArsR family transcriptional regulator n=12 Tax=Aurantimonadaceae TaxID=255475 RepID=A0A0Q6F8P2_9HYPH)

HSP 1 Score: 79.0 bits (193), Expect = 2.480e-17
Identity = 37/40 (92.50%), Postives = 40/40 (100.00%), Query Frame = 1 
Query:    1 YDAFYQKLIQKIEIRDVSSSFAMEQIKYTTELPLDYMVLD 120
            YDAFY++LIQKIEIRDVSSSFAMEQIKYTTELPLDYM+LD
Sbjct:  116 YDAFYKRLIQKIEIRDVSSSFAMEQIKYTTELPLDYMILD 155
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BLAST of mRNA_M-pyrifera_M_contig106020.1294.1 vs. uniprot
Match: A0A4R3NTQ7_9HYPH (AsnC family transcriptional regulator n=4 Tax=Martelella TaxID=293088 RepID=A0A4R3NTQ7_9HYPH)

HSP 1 Score: 79.0 bits (193), Expect = 2.480e-17
Identity = 36/46 (78.26%), Postives = 44/46 (95.65%), Query Frame = 1 
Query:    1 YDAFYQKLIQKIEIRDVSSSFAMEQIKYTTELPLDYMVLDASRSGD 138
            YDAFY+KLI+KIEIRDVSSSFAMEQIK++TELPLDYM L++ ++GD
Sbjct:  116 YDAFYKKLIEKIEIRDVSSSFAMEQIKFSTELPLDYMKLESGKNGD 161
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BLAST of mRNA_M-pyrifera_M_contig106020.1294.1 vs. uniprot
Match: A0A1U8MXK1_GOSHI (uncharacterized HTH-type transcriptional regulator YbaO-like n=4 Tax=cellular organisms TaxID=131567 RepID=A0A1U8MXK1_GOSHI)

HSP 1 Score: 79.0 bits (193), Expect = 2.530e-17
Identity = 36/46 (78.26%), Postives = 42/46 (91.30%), Query Frame = 1 
Query:    1 YDAFYQKLIQKIEIRDVSSSFAMEQIKYTTELPLDYMVLDASRSGD 138
            YD FYQ+LIQKI+IRDVSSSFAMEQIKYTT++PLDY+VLD  RS +
Sbjct:  116 YDRFYQRLIQKIDIRDVSSSFAMEQIKYTTQMPLDYLVLDKERSAE 161
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BLAST of mRNA_M-pyrifera_M_contig106020.1294.1 vs. uniprot
Match: A0A3S9B429_9HYPH (Lrp/AsnC family transcriptional regulator n=2 Tax=Rhizobiaceae TaxID=82115 RepID=A0A3S9B429_9HYPH)

HSP 1 Score: 78.6 bits (192), Expect = 3.580e-17
Identity = 36/46 (78.26%), Postives = 42/46 (91.30%), Query Frame = 1 
Query:    1 YDAFYQKLIQKIEIRDVSSSFAMEQIKYTTELPLDYMVLDASRSGD 138
            YD FY++LIQ+IEIRDVSSSFAM+QIKYTTELPLDY+V+D  RS D
Sbjct:  116 YDNFYKRLIQRIEIRDVSSSFAMQQIKYTTELPLDYLVVDGGRSSD 161
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BLAST of mRNA_M-pyrifera_M_contig106020.1294.1 vs. uniprot
Match: A0A011VBF4_BRUAN (ArsR family transcriptional regulator n=22 Tax=Hyphomicrobiales TaxID=356 RepID=A0A011VBF4_BRUAN)

HSP 1 Score: 77.4 bits (189), Expect = 9.460e-17
Identity = 37/40 (92.50%), Postives = 39/40 (97.50%), Query Frame = 1 
Query:    1 YDAFYQKLIQKIEIRDVSSSFAMEQIKYTTELPLDYMVLD 120
            YDAFY++LI KIEIRDVSSSFAMEQIKYTTELPLDYMVLD
Sbjct:  116 YDAFYKRLISKIEIRDVSSSFAMEQIKYTTELPLDYMVLD 155
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig106020.1294.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001C6A3B252.730e-1986.96Lrp/AsnC family transcriptional regulator n=1 Tax=... [more]
UPI0010AB1FAC5.730e-1984.78Lrp/AsnC family transcriptional regulator n=1 Tax=... [more]
A0A6A5L4C4_LUPAL1.680e-1882.61AsnC_trans_reg domain-containing protein n=1 Tax=L... [more]
A0A8J7R3C0_9HYPH3.170e-1884.78Lrp/AsnC family transcriptional regulator n=1 Tax=... [more]
A0A0D5LT53_MAREN4.380e-1882.61ArsR family transcriptional regulator n=10 Tax=Mar... [more]
A0A0Q6F8P2_9HYPH2.480e-1792.50ArsR family transcriptional regulator n=12 Tax=Aur... [more]
A0A4R3NTQ7_9HYPH2.480e-1778.26AsnC family transcriptional regulator n=4 Tax=Mart... [more]
A0A1U8MXK1_GOSHI2.530e-1778.26uncharacterized HTH-type transcriptional regulator... [more]
A0A3S9B429_9HYPH3.580e-1778.26Lrp/AsnC family transcriptional regulator n=2 Tax=... [more]
A0A011VBF4_BRUAN9.460e-1792.50ArsR family transcriptional regulator n=22 Tax=Hyp... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig106020contigM-pyrifera_M_contig106020:3..143 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score80.9
Seed ortholog evalue1.8e-13
Seed eggNOG ortholog1532558.JL39_21605
Preferred nameybaO
KEGG koko:K05800
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000096,GO:0000098,GO:0001101,GO:0003674,GO:0003676,GO:0003677,GO:0003700,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006351,GO:0006355,GO:0006520,GO:0006534,GO:0006725,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009059,GO:0009063,GO:0009069,GO:0009071,GO:0009093,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010033,GO:0010243,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0016054,GO:0016070,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019752,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031334,GO:0032774,GO:0034641,GO:0034645,GO:0034654,GO:0042221,GO:0043170,GO:0043200,GO:0043254,GO:0043436,GO:0043565,GO:0044087,GO:0044089,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044271,GO:0044273,GO:0044281,GO:0044282,GO:0044424,GO:0044444,GO:0044464,GO:0045893,GO:0045935,GO:0046395,GO:0046483,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051130,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0060255,GO:0065007,GO:0071704,GO:0080090,GO:0090304,GO:0097159,GO:0097659,GO:0140110,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901565,GO:1901575,GO:1901576,GO:1901605,GO:1901606,GO:1901698,GO:1901700,GO:1902680,GO:1903506,GO:1903508,GO:2000112,GO:2000142,GO:2000144,GO:2001141
EggNOG free text desc.transcriptional
EggNOG OGs1RDB3@1224,2U3ZD@28211,4B7PW@82115,COG1522@1,COG1522@2
COG Functional cat.K
Best tax levelRhizobiaceae
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03000
Exons1
Model size141
Cds size141
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815569.729056-CDS-M-pyrifera_M_contig106020:2..1431622815569.729056-CDS-M-pyrifera_M_contig106020:2..143Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig106020 3..143 +
1692277468.3051674-CDS-M-pyrifera_M_contig106020:2..1431692277468.3051674-CDS-M-pyrifera_M_contig106020:2..143Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig106020 3..143 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig106020.1294.1prot_M-pyrifera_M_contig106020.1294.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig106020 3..143 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig106020.1294.1

>prot_M-pyrifera_M_contig106020.1294.1 ID=prot_M-pyrifera_M_contig106020.1294.1|Name=mRNA_M-pyrifera_M_contig106020.1294.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=47bp
YDAFYQKLIQKIEIRDVSSSFAMEQIKYTTELPLDYMVLDASRSGD*
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mRNA from alignment at M-pyrifera_M_contig106020:3..143+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig106020.1294.1 ID=mRNA_M-pyrifera_M_contig106020.1294.1|Name=mRNA_M-pyrifera_M_contig106020.1294.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=141bp|location=Sequence derived from alignment at M-pyrifera_M_contig106020:3..143+ (Macrocystis pyrifera P11B4 male)
TATGACGCGTTCTATCAAAAACTGATCCAGAAGATCGAAATTCGCGATGT
GTCTTCGTCCTTTGCGATGGAGCAGATCAAGTACACCACGGAGCTGCCGC
TCGACTACATGGTTCTTGATGCCAGTCGCTCCGGCGATTAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig106020:3..143+

>mRNA_M-pyrifera_M_contig106020.1294.1 ID=mRNA_M-pyrifera_M_contig106020.1294.1|Name=mRNA_M-pyrifera_M_contig106020.1294.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=282bp|location=Sequence derived from alignment at M-pyrifera_M_contig106020:3..143+ (Macrocystis pyrifera P11B4 male)
TATGACGCGTTCTATCAAAAACTGATCCAGAAGATCGAAATTCGCGATGT
GTCTTCGTCCTTTGCGATGGAGCAGATCAAGTACACCACGGAGCTGCCGC
TCGACTACATGGTTCTTGATGCCAGTCGCTCCGGCGATTAGTATGACGCG
TTCTATCAAAAACTGATCCAGAAGATCGAAATTCGCGATGTGTCTTCGTC
CTTTGCGATGGAGCAGATCAAGTACACCACGGAGCTGCCGCTCGACTACA
TGGTTCTTGATGCCAGTCGCTCCGGCGATTAG
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