mRNA_M-pyrifera_M_contig106014.1290.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig106014.1290.1
Unique NamemRNA_M-pyrifera_M_contig106014.1290.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig106014.1290.1 vs. uniprot
Match: B4HB84_DROPE (GL21350 (Fragment) n=1 Tax=Drosophila persimilis TaxID=7234 RepID=B4HB84_DROPE)

HSP 1 Score: 125 bits (314), Expect = 1.380e-32
Identity = 64/132 (48.48%), Postives = 93/132 (70.45%), Query Frame = 1 
Query:    1 KKFSITKPPQYLILQVKRFTRNQYFVEKNRTIVNFPLQDLDITECTCATLRWHNVS-TKYNLLANIRHIDEAEEELNKTLTKVEGDKIKGSYSAHIVNRADGKWFEVQDLIVSEALPALITLSEAYLQIYER 393
            K+F IT+ PQ++IL +KRFT+N +F+EKN TIVNFP++++D  +      R  +V  TKYNL+ANI H               +GD  KG+Y AHI+++A+G+W+E+QDL V+E LP +ITL+E+Y+QIYER
Sbjct:  179 KRFEITRLPQFIILYIKRFTKNTFFLEKNPTIVNFPIKNVDFGDILGMRQRDKDVKDTKYNLVANIVH---------------DGDPKKGTYRAHILHKANGQWYEMQDLHVTEILPQMITLTESYIQIYER 295
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BLAST of mRNA_M-pyrifera_M_contig106014.1290.1 vs. uniprot
Match: Q9VWP1_DROME (LD38070p n=3 Tax=Drosophila TaxID=7215 RepID=Q9VWP1_DROME)

HSP 1 Score: 128 bits (321), Expect = 2.840e-32
Identity = 65/133 (48.87%), Postives = 93/133 (69.92%), Query Frame = 1 
Query:    1 KKFSITKPPQYLILQVKRFTRNQYFVEKNRTIVNFPLQDLDITECTCATLRWHNVS-TKYNLLANIRHIDEAEEELNKTLTKVEGDKIKGSYSAHIVNRADGKWFEVQDLIVSEALPALITLSEAYLQIYERC 396
            K+F IT+ PQ++IL +KRFT+N +F+EKN TIVNFP++ +D  +      R  +V  TKYNL+ANI H               +GD  KG+Y AHI+++A+G+W+E+QDL V+E LP +ITL+E+Y+QIYERC
Sbjct:  373 KRFEITRLPQFIILYIKRFTKNTFFLEKNPTIVNFPIKHVDFGDILGMRQRDKDVKDTKYNLVANIVH---------------DGDPKKGTYRAHILHKANGQWYEMQDLHVTEILPQMITLTESYIQIYERC 490
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BLAST of mRNA_M-pyrifera_M_contig106014.1290.1 vs. uniprot
Match: B4MTF3_DROWI (Uncharacterized protein n=2 Tax=Drosophilinae TaxID=43845 RepID=B4MTF3_DROWI)

HSP 1 Score: 128 bits (321), Expect = 2.950e-32
Identity = 65/134 (48.51%), Postives = 95/134 (70.90%), Query Frame = 1 
Query:    1 KKFSITKPPQYLILQVKRFTRNQYFVEKNRTIVNFPLQDLDITECTCATLRWHNV-STKYNLLANIRHIDEAEEELNKTLTKVEGDKIKGSYSAHIVNRADGKWFEVQDLIVSEALPALITLSEAYLQIYERCE 399
            K+F IT+ PQ++IL +KRFT+N +F+EKN TIVNFP++++D  +      R  NV +TKYNL+ANI H               +GD  KG+Y AHI+++A+G+W+E+QDL V+E LP +ITL+E+Y+QIYER +
Sbjct:  378 KRFEITRLPQFIILYIKRFTKNTFFLEKNPTIVNFPIKNVDFGDILGMRQRDKNVKNTKYNLVANIVH---------------DGDPKKGTYRAHILHKANGQWYEMQDLHVTEILPQMITLTESYIQIYERSD 496
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BLAST of mRNA_M-pyrifera_M_contig106014.1290.1 vs. uniprot
Match: R4WSG3_RIPPE (Ubiquitin specific protease 39 and snrnp assembly factor n=1 Tax=Riptortus pedestris TaxID=329032 RepID=R4WSG3_RIPPE)

HSP 1 Score: 124 bits (310), Expect = 3.590e-32
Identity = 61/130 (46.92%), Postives = 89/130 (68.46%), Query Frame = 1 
Query:    1 KKFSITKPPQYLILQVKRFTRNQYFVEKNRTIVNFPLQDLDITECTCATLRWHNVSTKYNLLANIRHIDEAEEELNKTLTKVEGDKIKGSYSAHIVNRADGKWFEVQDLIVSEALPALITLSEAYLQIYE 390
            KKF ITK P YLIL +KRFT+N +FVEKN TIVNFP++++D  +     ++  + ST Y+L+ANI H               +G+  KG+Y  H++++ +GKW+E+QDL V++ LP +ITL+EAY+QIYE
Sbjct:  159 KKFEITKLPPYLILYIKRFTKNTFFVEKNPTIVNFPVKNIDFGDFLMPEIKARHKSTVYDLVANIVH---------------DGEPDKGTYRVHLLHKGNGKWYEMQDLHVTDILPQMITLTEAYIQIYE 273
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BLAST of mRNA_M-pyrifera_M_contig106014.1290.1 vs. uniprot
Match: T1KF70_TETUR (Uncharacterized protein n=1 Tax=Tetranychus urticae TaxID=32264 RepID=T1KF70_TETUR)

HSP 1 Score: 127 bits (318), Expect = 6.060e-32
Identity = 62/131 (47.33%), Postives = 90/131 (68.70%), Query Frame = 1 
Query:    1 KKFSITKPPQYLILQVKRFTRNQYFVEKNRTIVNFPLQDLDITECTCATLRWHNVSTKYNLLANIRHIDEAEEELNKTLTKVEGDKIKGSYSAHIVNRADGKWFEVQDLIVSEALPALITLSEAYLQIYER 393
            ++F IT+ P+YLIL +KRFT+N +++EKN TIVNFP++D+D+TE      R  N+   Y+L+ANI H             + E D  KG+Y  H+++R  GKWFE+QDL V+E LP +ITLSE+Y+QI+E+
Sbjct:  344 RRFEITQLPKYLILYMKRFTKNTFYIEKNPTIVNFPIKDVDLTELLSPAKRTDNIRCHYDLIANIVH-------------EGEPDPGKGAYRIHVLHRGSGKWFEMQDLHVTEILPQMITLSESYIQIWEK 461
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BLAST of mRNA_M-pyrifera_M_contig106014.1290.1 vs. uniprot
Match: A0A482XDX9_LAOST (USP domain-containing protein n=1 Tax=Laodelphax striatellus TaxID=195883 RepID=A0A482XDX9_LAOST)

HSP 1 Score: 121 bits (303), Expect = 6.450e-32
Identity = 58/130 (44.62%), Postives = 88/130 (67.69%), Query Frame = 1 
Query:    1 KKFSITKPPQYLILQVKRFTRNQYFVEKNRTIVNFPLQDLDITECTCATLRWHNVSTKYNLLANIRHIDEAEEELNKTLTKVEGDKIKGSYSAHIVNRADGKWFEVQDLIVSEALPALITLSEAYLQIYE 390
            K+F ITK P YLIL +KRFT+N +F+EKN TIVNFP++++D  +     ++  + +T Y+L+ANI H               +G+  KG+Y  H++++  GKW+E+QDL V++ LP +ITL+EAY+QIYE
Sbjct:   81 KRFEITKLPPYLILYIKRFTKNTFFIEKNPTIVNFPVKNVDFGDILTPEIKAKHKNTVYDLVANIVH---------------DGEPTKGTYRVHVLHKGTGKWYEMQDLHVTDILPQMITLTEAYIQIYE 195
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BLAST of mRNA_M-pyrifera_M_contig106014.1290.1 vs. uniprot
Match: A0A1B6M9V3_9HEMI (USP domain-containing protein (Fragment) n=1 Tax=Graphocephala atropunctata TaxID=36148 RepID=A0A1B6M9V3_9HEMI)

HSP 1 Score: 119 bits (297), Expect = 9.580e-32
Identity = 58/130 (44.62%), Postives = 88/130 (67.69%), Query Frame = 1 
Query:    1 KKFSITKPPQYLILQVKRFTRNQYFVEKNRTIVNFPLQDLDITECTCATLRWHNVSTKYNLLANIRHIDEAEEELNKTLTKVEGDKIKGSYSAHIVNRADGKWFEVQDLIVSEALPALITLSEAYLQIYE 390
            K+F IT+ P YLIL +KRFT+N +FVEKN TIVNFP++++D  +     ++  + +T Y+L+ANI H               +G+  KG+Y  H++++  GKW+E+QDL V++ LP +ITL+EAY+QIYE
Sbjct:   22 KRFEITQLPPYLILYIKRFTKNTFFVEKNPTIVNFPVKNVDFGDILTPEVKKRHKNTIYDLVANIVH---------------DGEPSKGTYRVHVLHKGTGKWYEMQDLHVTDILPQMITLTEAYVQIYE 136
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BLAST of mRNA_M-pyrifera_M_contig106014.1290.1 vs. uniprot
Match: A0A3S3PN72_9ACAR (U4/U6.U5 tri-snRNP-associated protein 2-like protein n=1 Tax=Dinothrombium tinctorium TaxID=1965070 RepID=A0A3S3PN72_9ACAR)

HSP 1 Score: 126 bits (317), Expect = 1.010e-31
Identity = 63/133 (47.37%), Postives = 91/133 (68.42%), Query Frame = 1 
Query:    1 KKFSITKPPQYLILQVKRFTRNQYFVEKNRTIVNFPLQDLDITECTCATLRWHNVSTKYNLLANIRHIDEAEEELNKTLTKVEGDKIKGSYSAHIVNRADGKWFEVQDLIVSEALPALITLSEAYLQIYERCE 399
            K+F + K P+YLIL +KRFT+N +++EKN TIVNFP++++D+TE    T + +N    Y+L+ANI H             + E D  KGSY  H+++R  GKWFE+QDL V+E LP +ITLSE+Y+QI+E+ E
Sbjct:  364 KRFELIKLPKYLILYIKRFTKNTFYIEKNPTIVNFPIKNVDLTEILSQTGKANNPQCTYDLIANIVH-------------EGEPDPGKGSYRVHVLHRGSGKWFEMQDLHVTEILPQMITLSESYIQIWEKQE 483
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BLAST of mRNA_M-pyrifera_M_contig106014.1290.1 vs. uniprot
Match: UPI0018CE9E20 (U4/U6.U5 tri-snRNP-associated protein 2-like n=2 Tax=Teleopsis dalmanni TaxID=139649 RepID=UPI0018CE9E20)

HSP 1 Score: 126 bits (317), Expect = 1.080e-31
Identity = 63/133 (47.37%), Postives = 91/133 (68.42%), Query Frame = 1 
Query:    1 KKFSITKPPQYLILQVKRFTRNQYFVEKNRTIVNFPLQDLDITECTCATLRWHNVSTKYNLLANIRHIDEAEEELNKTLTKVEGDKIKGSYSAHIVNRADGKWFEVQDLIVSEALPALITLSEAYLQIYERCE 399
            K+F IT+ PQY+IL +KRFT+N +F+EKN TIVNFP++++D  +      R     TKYNL+ANI H               +G+  KG+Y AHI+++A+ KW+E+QDL V+E LP +ITL+E+Y+QIYER +
Sbjct:  377 KRFEITRLPQYIILYIKRFTKNTFFLEKNPTIVNFPIKNVDFGDILSMPNRDQIKDTKYNLVANIVH---------------DGEPKKGTYRAHILHKANSKWYEMQDLHVTEILPQMITLTESYIQIYERSD 494
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BLAST of mRNA_M-pyrifera_M_contig106014.1290.1 vs. uniprot
Match: A0A0K8TZ59_BACLA (U4/U6.U5 tri-snRNP-associated protein 2 n=15 Tax=Tephritidae TaxID=7211 RepID=A0A0K8TZ59_BACLA)

HSP 1 Score: 126 bits (316), Expect = 1.540e-31
Identity = 62/131 (47.33%), Postives = 92/131 (70.23%), Query Frame = 1 
Query:    1 KKFSITKPPQYLILQVKRFTRNQYFVEKNRTIVNFPLQDLDITECTCATLRWHNVSTKYNLLANIRHIDEAEEELNKTLTKVEGDKIKGSYSAHIVNRADGKWFEVQDLIVSEALPALITLSEAYLQIYER 393
            K+F IT+ PQY+IL +KRFT+N +F+EKN TIVNFP++++D  +      R    +TKYNL+ANI H               +G+  KG+Y AHI+++A+G+W+E+QDL V+E LP +ITL+E+Y+QIYE+
Sbjct:  381 KRFEITRLPQYIILYIKRFTKNTFFLEKNPTIVNFPIKNVDFGDILSMKNREQLKNTKYNLVANIVH---------------DGEPKKGTYRAHILHKANGQWYEMQDLHVTEILPPMITLTESYIQIYEQ 496
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig106014.1290.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
B4HB84_DROPE1.380e-3248.48GL21350 (Fragment) n=1 Tax=Drosophila persimilis T... [more]
Q9VWP1_DROME2.840e-3248.87LD38070p n=3 Tax=Drosophila TaxID=7215 RepID=Q9VWP... [more]
B4MTF3_DROWI2.950e-3248.51Uncharacterized protein n=2 Tax=Drosophilinae TaxI... [more]
R4WSG3_RIPPE3.590e-3246.92Ubiquitin specific protease 39 and snrnp assembly ... [more]
T1KF70_TETUR6.060e-3247.33Uncharacterized protein n=1 Tax=Tetranychus urtica... [more]
A0A482XDX9_LAOST6.450e-3244.62USP domain-containing protein n=1 Tax=Laodelphax s... [more]
A0A1B6M9V3_9HEMI9.580e-3244.62USP domain-containing protein (Fragment) n=1 Tax=G... [more]
A0A3S3PN72_9ACAR1.010e-3147.37U4/U6.U5 tri-snRNP-associated protein 2-like prote... [more]
UPI0018CE9E201.080e-3147.37U4/U6.U5 tri-snRNP-associated protein 2-like n=2 T... [more]
A0A0K8TZ59_BACLA1.540e-3147.33U4/U6.U5 tri-snRNP-associated protein 2 n=15 Tax=T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig106014contigM-pyrifera_M_contig106014:22..472 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeArthropoda
Seed ortholog score130.6
Seed ortholog evalue5.6e-28
Seed eggNOG ortholog7220.FBpp0137740
KEGG koko:K12847
KEGG Pathwayko03040,map03040
KEGG ModuleM00354
Hectar predicted targeting categoryother localisation
GOsGO:0000375,GO:0000377,GO:0000398,GO:0003674,GO:0003824,GO:0004843,GO:0006139,GO:0006396,GO:0006397,GO:0006464,GO:0006508,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008234,GO:0008380,GO:0009987,GO:0010467,GO:0016070,GO:0016071,GO:0016579,GO:0016787,GO:0019538,GO:0019783,GO:0034641,GO:0036211,GO:0036459,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0046483,GO:0070011,GO:0070646,GO:0070647,GO:0071704,GO:0090304,GO:0101005,GO:0140096,GO:1901360,GO:1901564
EggNOG free text desc.It is involved in the biological process described with ubiquitin-dependent protein catabolic process
EggNOG OGs38CQK@33154,3BDYW@33208,3CZKE@33213,3SHBJ@50557,41VCY@6656,4502F@7147,45WUW@7214,KOG2026@1,KOG2026@2759
COG Functional cat.Z
Best tax levelDrosophilidae
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03041
Exons2
Model size402
Cds size402
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815569.5310104-CDS-M-pyrifera_M_contig106014:21..1791622815569.5310104-CDS-M-pyrifera_M_contig106014:21..179Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig106014 22..179 +
1692277468.1969814-CDS-M-pyrifera_M_contig106014:21..1791692277468.1969814-CDS-M-pyrifera_M_contig106014:21..179Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig106014 22..179 +
1622815569.541402-CDS-M-pyrifera_M_contig106014:228..4721622815569.541402-CDS-M-pyrifera_M_contig106014:228..472Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig106014 229..472 +
1692277468.208252-CDS-M-pyrifera_M_contig106014:228..4721692277468.208252-CDS-M-pyrifera_M_contig106014:228..472Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig106014 229..472 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig106014.1290.1prot_M-pyrifera_M_contig106014.1290.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig106014 22..472 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig106014.1290.1

>prot_M-pyrifera_M_contig106014.1290.1 ID=prot_M-pyrifera_M_contig106014.1290.1|Name=mRNA_M-pyrifera_M_contig106014.1290.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=134bp
KKFSITKPPQYLILQVKRFTRNQYFVEKNRTIVNFPLQDLDITECTCATL
RWHNVSTKYNLLANIRHIDEAEEELNKTLTKVEGDKIKGSYSAHIVNRAD
GKWFEVQDLIVSEALPALITLSEAYLQIYERCE*
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mRNA from alignment at M-pyrifera_M_contig106014:22..472+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig106014.1290.1 ID=mRNA_M-pyrifera_M_contig106014.1290.1|Name=mRNA_M-pyrifera_M_contig106014.1290.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=451bp|location=Sequence derived from alignment at M-pyrifera_M_contig106014:22..472+ (Macrocystis pyrifera P11B4 male)
AAGAAGTTCTCGATCACAAAGCCTCCTCAGTACCTGATACTGCAAGTGAA
GCGCTTCACGAGGAACCAATACTTCGTCGAGAAGAACCGCACCATCGTCA
ATTTCCCGCTCCAGGACTTGGACATCACAGAGTGTACGTGCGCTACCTTG
CGCTGGCAGTTAAAACTTGCGCTGACGCTGGGCAGATTGCACTTTGCCGG
CGGGTAGCAACGTCTCGACGAAGTACAACCTCCTCGCCAACATTCGCCAC
ATCGACGAGGCGGAGGAAGAGCTCAACAAGACGCTCACCAAGGTGGAGGG
CGACAAGATCAAGGGCAGCTATTCGGCACACATCGTCAATCGCGCAGACG
GGAAGTGGTTCGAGGTGCAGGACCTCATTGTGTCAGAGGCGCTGCCTGCC
CTCATCACGCTCTCGGAAGCCTACCTGCAGATCTACGAGCGCTGCGAATG
A
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig106014:22..472+

>mRNA_M-pyrifera_M_contig106014.1290.1 ID=mRNA_M-pyrifera_M_contig106014.1290.1|Name=mRNA_M-pyrifera_M_contig106014.1290.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=804bp|location=Sequence derived from alignment at M-pyrifera_M_contig106014:22..472+ (Macrocystis pyrifera P11B4 male)
AAGAAGTTCTCGATCACAAAGCCTCCTCAGTACCTGATACTGCAAGTGAA
GCGCTTCACGAGGAACCAATACTTCGTCGAGAAGAACCGCACCATCGTCA
ATTTCCCGCTCCAGGACTTGGACATCACAGAGTGTACGTGCGCTACCTTG
CGCTGGCAAAGAAGTTCTCGATCACAAAGCCTCCTCAGTACCTGATACTG
CAAGTGAAGCGCTTCACGAGGAACCAATACTTCGTCGAGAAGAACCGCAC
CATCGTCAATTTCCCGCTCCAGGACTTGGACATCACAGAGTGTACGTGCG
CTACCTTGCGCTGGCACAACGTCTCGACGAAGTACAACCTCCTCGCCAAC
ATTCGCCACATCGACGAGGCGGAGGAAGAGCTCAACAAGACGCTCACCAA
GGTGGAGGGCGACAAGATCAAGGGCAGCTATTCGGCACACATCGTCAATC
GCGCAGACGGGAAGTGGTTCGAGGTGCAGGACCTCATTGTGTCAGAGGCG
CTGCCTGCCCTCATCACGCTCTCGGAAGCCTACCTGCAGATCTACGAGCG
CTGCGAATGACAACGTCTCGACGAAGTACAACCTCCTCGCCAACATTCGC
CACATCGACGAGGCGGAGGAAGAGCTCAACAAGACGCTCACCAAGGTGGA
GGGCGACAAGATCAAGGGCAGCTATTCGGCACACATCGTCAATCGCGCAG
ACGGGAAGTGGTTCGAGGTGCAGGACCTCATTGTGTCAGAGGCGCTGCCT
GCCCTCATCACGCTCTCGGAAGCCTACCTGCAGATCTACGAGCGCTGCGA
ATGA
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