mRNA_M-pyrifera_M_contig106007.1286.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig106007.1286.1
Unique NamemRNA_M-pyrifera_M_contig106007.1286.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig106007.1286.1 vs. uniprot
Match: A0A3C1KLL4_9GAMM (Glucose-1-phosphate thymidylyltransferase n=5 Tax=Halieaceae TaxID=1706372 RepID=A0A3C1KLL4_9GAMM)

HSP 1 Score: 418 bits (1075), Expect = 1.630e-146
Identity = 207/210 (98.57%), Postives = 209/210 (99.52%), Query Frame = 1 
Query:    1 ITTPRDQAAFSDLLADGSQWGINIQYTVQPSPDGLAQAFLLGADFIGNSPCALVLGDNIFYGGGFTQSLRNAAQSQSGASVFAYYVQDPERYGVVSFNAQGVAVDIEEKPARPRSHYAVTGLYFYDNAVVDIARGIRPSARGELEITDVNKAYLARGDLRVEVMSRGTAWLDTGTHNSLLDAANFIRVVEERQGLKIACPEEVAYRMGYI 630
            ITTPRDQAAFSDLLADGSQWGINIQYTVQPSPDGLAQAFLLGA+FIGNSPCALVLGDNIFYGGGFTQSLRNAAQSQSGASVFAYYVQDPERYGVVSFNAQGVAVDIEEKP RPRSHYAVTGLYFYDNAVVDIARGI+PSARGELEITDVNKAYLARGDLRVEVMSRGTAWLDTGTHNSLLDAANFIRVVEERQGLKIACPEEVAYRMGYI
Sbjct:   57 ITTPRDQAAFSDLLADGSQWGINIQYTVQPSPDGLAQAFLLGAEFIGNSPCALVLGDNIFYGGGFTQSLRNAAQSQSGASVFAYYVQDPERYGVVSFNAQGVAVDIEEKPVRPRSHYAVTGLYFYDNAVVDIARGIQPSARGELEITDVNKAYLARGDLRVEVMSRGTAWLDTGTHNSLLDAANFIRVVEERQGLKIACPEEVAYRMGYI 266
[Close]
BLAST of mRNA_M-pyrifera_M_contig106007.1286.1 vs. uniprot
Match: A0A7W2TXR4_9GAMM (Glucose-1-phosphate thymidylyltransferase n=1 Tax=Sediminihaliea albiluteola TaxID=2758564 RepID=A0A7W2TXR4_9GAMM)

HSP 1 Score: 380 bits (977), Expect = 1.410e-131
Identity = 183/210 (87.14%), Postives = 197/210 (93.81%), Query Frame = 1 
Query:    1 ITTPRDQAAFSDLLADGSQWGINIQYTVQPSPDGLAQAFLLGADFIGNSPCALVLGDNIFYGGGFTQSLRNAAQSQSGASVFAYYVQDPERYGVVSFNAQGVAVDIEEKPARPRSHYAVTGLYFYDNAVVDIARGIRPSARGELEITDVNKAYLARGDLRVEVMSRGTAWLDTGTHNSLLDAANFIRVVEERQGLKIACPEEVAYRMGYI 630
            ITTPRDQ AFSDLL DGSQWGINI YTVQPSPDGLAQAF+LG +FIGNSPC+LVLGDNIFYGGGFTQ LRNAA  +SGASVFAYYVQDPERYGVVSF+  G A+DIEEKPA+PRSHYAVTGLYFYDN V++IA+GI+PS RGELEITDVN+AYL RGDL+VEVMSRGTAWLDTGTHNSLLDAAN+IRVVEERQGLKIACPEEVAYRMGYI
Sbjct:   58 ITTPRDQPAFSDLLGDGSQWGINISYTVQPSPDGLAQAFILGEEFIGNSPCSLVLGDNIFYGGGFTQRLRNAATRESGASVFAYYVQDPERYGVVSFDKDGTALDIEEKPAKPRSHYAVTGLYFYDNDVIEIAKGIKPSHRGELEITDVNRAYLQRGDLQVEVMSRGTAWLDTGTHNSLLDAANYIRVVEERQGLKIACPEEVAYRMGYI 267
[Close]
BLAST of mRNA_M-pyrifera_M_contig106007.1286.1 vs. uniprot
Match: A0A661HAC3_9GAMM (Glucose-1-phosphate thymidylyltransferase n=3 Tax=Gammaproteobacteria TaxID=1236 RepID=A0A661HAC3_9GAMM)

HSP 1 Score: 374 bits (960), Expect = 5.260e-129
Identity = 182/210 (86.67%), Postives = 191/210 (90.95%), Query Frame = 1 
Query:    1 ITTPRDQAAFSDLLADGSQWGINIQYTVQPSPDGLAQAFLLGADFIGNSPCALVLGDNIFYGGGFTQSLRNAAQSQSGASVFAYYVQDPERYGVVSFNAQGVAVDIEEKPARPRSHYAVTGLYFYDNAVVDIARGIRPSARGELEITDVNKAYLARGDLRVEVMSRGTAWLDTGTHNSLLDAANFIRVVEERQGLKIACPEEVAYRMGYI 630
            ITTPRDQ AFSDLL DGS WGINI YTVQPSPDGLAQAF+LG DFIGNSP +LVLGDNIFYGGGFT+ L NAA   +GASVFAYYVQDPERYGVVSF+  GVA DIEEKPA+PRSHYAVTGLYFYDN VVDIA+GI+PS RGELEITD+N  YL RGDLRVEVMSRGTAWLDTGTHNSLLDAANFIRVVEERQGLKIACPEEVAYRMGYI
Sbjct:   57 ITTPRDQVAFSDLLGDGSNWGINISYTVQPSPDGLAQAFILGEDFIGNSPASLVLGDNIFYGGGFTEKLTNAASRDAGASVFAYYVQDPERYGVVSFDENGVARDIEEKPAKPRSHYAVTGLYFYDNDVVDIAKGIQPSERGELEITDINMVYLERGDLRVEVMSRGTAWLDTGTHNSLLDAANFIRVVEERQGLKIACPEEVAYRMGYI 266
[Close]
BLAST of mRNA_M-pyrifera_M_contig106007.1286.1 vs. uniprot
Match: UPI00167B6814 (glucose-1-phosphate thymidylyltransferase RfbA n=1 Tax=Halioglobus pacificus TaxID=930806 RepID=UPI00167B6814)

HSP 1 Score: 372 bits (955), Expect = 3.030e-128
Identity = 179/210 (85.24%), Postives = 193/210 (91.90%), Query Frame = 1 
Query:    1 ITTPRDQAAFSDLLADGSQWGINIQYTVQPSPDGLAQAFLLGADFIGNSPCALVLGDNIFYGGGFTQSLRNAAQSQSGASVFAYYVQDPERYGVVSFNAQGVAVDIEEKPARPRSHYAVTGLYFYDNAVVDIARGIRPSARGELEITDVNKAYLARGDLRVEVMSRGTAWLDTGTHNSLLDAANFIRVVEERQGLKIACPEEVAYRMGYI 630
            ITTPRDQAAF+DLL DGSQWG+NIQYTVQPSPDGLAQAF+LG  FIG+SP +LVLGDNIFYGGGFT+ LRNAA   SGASVFAYYVQDPERYGVV F+  G+A DIEEKPA+PRSHYAVTGLYFYDN VVDIA+ I+PS RGELEITDVNK YL RGDL+VEVMSRGTAWLDTGTHNSLLDAANFIRVVEERQGLK+ACPEEVA+RMGYI
Sbjct:   57 ITTPRDQAAFADLLGDGSQWGVNIQYTVQPSPDGLAQAFILGESFIGSSPASLVLGDNIFYGGGFTKKLRNAASRDSGASVFAYYVQDPERYGVVEFDGDGIARDIEEKPAKPRSHYAVTGLYFYDNDVVDIAKSIKPSHRGELEITDVNKVYLERGDLQVEVMSRGTAWLDTGTHNSLLDAANFIRVVEERQGLKVACPEEVAFRMGYI 266
[Close]
BLAST of mRNA_M-pyrifera_M_contig106007.1286.1 vs. uniprot
Match: A0A2D5F6R4_9GAMM (Glucose-1-phosphate thymidylyltransferase n=1 Tax=Haliea sp. TaxID=1932666 RepID=A0A2D5F6R4_9GAMM)

HSP 1 Score: 370 bits (950), Expect = 1.870e-127
Identity = 181/210 (86.19%), Postives = 193/210 (91.90%), Query Frame = 1 
Query:    1 ITTPRDQAAFSDLLADGSQWGINIQYTVQPSPDGLAQAFLLGADFIGNSPCALVLGDNIFYGGGFTQSLRNAAQSQSGASVFAYYVQDPERYGVVSFNAQGVAVDIEEKPARPRSHYAVTGLYFYDNAVVDIARGIRPSARGELEITDVNKAYLARGDLRVEVMSRGTAWLDTGTHNSLLDAANFIRVVEERQGLKIACPEEVAYRMGYI 630
            ITTPRDQ AF DLL DGS WGI I YTVQPSPDGLAQAFLLG DFIG++P ALVLGDNIFYGGGFT+SLR AA   +GASVFAYYV DPERYGVVSF++QG A+DIEEKPA+PRSHYAVTGLYFYDN VVDIAR IRPSARGELEITD+N+AYL RGDL+VEVMSRGTAWLDTGTHNSLLDAANFIRVVEERQGLKIACPEEVA+RMGYI
Sbjct:   58 ITTPRDQQAFRDLLGDGSAWGIQISYTVQPSPDGLAQAFLLGRDFIGDNPAALVLGDNIFYGGGFTRSLRQAASRDAGASVFAYYVHDPERYGVVSFDSQGRAIDIEEKPAQPRSHYAVTGLYFYDNDVVDIARDIRPSARGELEITDINRAYLERGDLQVEVMSRGTAWLDTGTHNSLLDAANFIRVVEERQGLKIACPEEVAWRMGYI 267
[Close]
BLAST of mRNA_M-pyrifera_M_contig106007.1286.1 vs. uniprot
Match: A0A2N5Y7I0_9GAMM (Glucose-1-phosphate thymidylyltransferase n=1 Tax=Kineobactrum sediminis TaxID=1905677 RepID=A0A2N5Y7I0_9GAMM)

HSP 1 Score: 370 bits (949), Expect = 2.400e-127
Identity = 180/210 (85.71%), Postives = 191/210 (90.95%), Query Frame = 1 
Query:    1 ITTPRDQAAFSDLLADGSQWGINIQYTVQPSPDGLAQAFLLGADFIGNSPCALVLGDNIFYGGGFTQSLRNAAQSQSGASVFAYYVQDPERYGVVSFNAQGVAVDIEEKPARPRSHYAVTGLYFYDNAVVDIARGIRPSARGELEITDVNKAYLARGDLRVEVMSRGTAWLDTGTHNSLLDAANFIRVVEERQGLKIACPEEVAYRMGYI 630
            ITTPRD+ AF+DLL DG++WG+NI YTVQPSPDGLAQAFLLG  FIGN P ALVLGDNIFYGGGFT  LR AA+   GASVFAYYVQDPERYGVV+FN  G+A+DIEEKPA P+SHYAVTGLYFYDN VVDIAR IRPS RGELEITDVNKAYLARGDL+VEVMSRGTAWLDTGTHNSLLDAANFIRVVEERQGLKIACPEEVAYRMGYI
Sbjct:   56 ITTPRDREAFADLLGDGTRWGLNISYTVQPSPDGLAQAFLLGETFIGNDPVALVLGDNIFYGGGFTPGLRKAARRDRGASVFAYYVQDPERYGVVNFNDDGIALDIEEKPANPKSHYAVTGLYFYDNDVVDIARSIRPSPRGELEITDVNKAYLARGDLQVEVMSRGTAWLDTGTHNSLLDAANFIRVVEERQGLKIACPEEVAYRMGYI 265
[Close]
BLAST of mRNA_M-pyrifera_M_contig106007.1286.1 vs. uniprot
Match: A0A4R2KSR5_9GAMM (Glucose-1-phosphate thymidylyltransferase n=1 Tax=Chromatocurvus halotolerans TaxID=1132028 RepID=A0A4R2KSR5_9GAMM)

HSP 1 Score: 370 bits (949), Expect = 2.570e-127
Identity = 179/210 (85.24%), Postives = 194/210 (92.38%), Query Frame = 1 
Query:    1 ITTPRDQAAFSDLLADGSQWGINIQYTVQPSPDGLAQAFLLGADFIGNSPCALVLGDNIFYGGGFTQSLRNAAQSQSGASVFAYYVQDPERYGVVSFNAQGVAVDIEEKPARPRSHYAVTGLYFYDNAVVDIARGIRPSARGELEITDVNKAYLARGDLRVEVMSRGTAWLDTGTHNSLLDAANFIRVVEERQGLKIACPEEVAYRMGYI 630
            ITTPRDQ AF+DLL DGSQWGI++QYTVQPSPDGLAQAF+LGADFI  +PCALVLGDNIFYGGGFTQ L++AA    GASVFAYYVQDPERYGVV F++ G AVDIEEKPA+PRS+YAVTGLYFYDN V+DIA GI PS RGELEITDVNKAYLARGDL+VEVMSRGTAWLDTGTHNSLLDAANFIRVVEERQGLKIACPEE+A+RMGYI
Sbjct:   58 ITTPRDQRAFADLLGDGSQWGISLQYTVQPSPDGLAQAFILGADFIDKAPCALVLGDNIFYGGGFTQCLKSAAARDRGASVFAYYVQDPERYGVVEFSSDGTAVDIEEKPAQPRSNYAVTGLYFYDNDVLDIAAGITPSRRGELEITDVNKAYLARGDLQVEVMSRGTAWLDTGTHNSLLDAANFIRVVEERQGLKIACPEEIAFRMGYI 267
[Close]
BLAST of mRNA_M-pyrifera_M_contig106007.1286.1 vs. uniprot
Match: A0A5C8ZY43_9GAMM (Glucose-1-phosphate thymidylyltransferase n=4 Tax=Parahaliea TaxID=1857932 RepID=A0A5C8ZY43_9GAMM)

HSP 1 Score: 368 bits (945), Expect = 1.010e-126
Identity = 179/210 (85.24%), Postives = 192/210 (91.43%), Query Frame = 1 
Query:    1 ITTPRDQAAFSDLLADGSQWGINIQYTVQPSPDGLAQAFLLGADFIGNSPCALVLGDNIFYGGGFTQSLRNAAQSQSGASVFAYYVQDPERYGVVSFNAQGVAVDIEEKPARPRSHYAVTGLYFYDNAVVDIARGIRPSARGELEITDVNKAYLARGDLRVEVMSRGTAWLDTGTHNSLLDAANFIRVVEERQGLKIACPEEVAYRMGYI 630
            ITTPRDQ AF+DLL +G QWGINI YTVQPSPDGLAQAF+LG  FIG SPCALVLGDNIFYGGGFT+SLR AAQ  SGASVFAYYV DPERYGVVSF+  G A+DIEEKPA+P+SHYAVTGLYFYDN VV+IAR I+PS RGELEITDVN+AYL RGDL+VEVMSRGTAWLDTGTHNSLLDAAN+IRVVEERQGLKIACPEEVAYRMGYI
Sbjct:   57 ITTPRDQRAFADLLGNGEQWGINISYTVQPSPDGLAQAFILGETFIGTSPCALVLGDNIFYGGGFTKSLRAAAQRDSGASVFAYYVTDPERYGVVSFDRDGTALDIEEKPAKPKSHYAVTGLYFYDNDVVEIARNIKPSHRGELEITDVNRAYLQRGDLQVEVMSRGTAWLDTGTHNSLLDAANYIRVVEERQGLKIACPEEVAYRMGYI 266
[Close]
BLAST of mRNA_M-pyrifera_M_contig106007.1286.1 vs. uniprot
Match: A0A095VTU8_9GAMM (Glucose-1-phosphate thymidylyltransferase n=1 Tax=Pseudohaliea rubra DSM 19751 TaxID=1265313 RepID=A0A095VTU8_9GAMM)

HSP 1 Score: 368 bits (945), Expect = 1.080e-126
Identity = 179/210 (85.24%), Postives = 195/210 (92.86%), Query Frame = 1 
Query:    1 ITTPRDQAAFSDLLADGSQWGINIQYTVQPSPDGLAQAFLLGADFIGNSPCALVLGDNIFYGGGFTQSLRNAAQSQSGASVFAYYVQDPERYGVVSFNAQGVAVDIEEKPARPRSHYAVTGLYFYDNAVVDIARGIRPSARGELEITDVNKAYLARGDLRVEVMSRGTAWLDTGTHNSLLDAANFIRVVEERQGLKIACPEEVAYRMGYI 630
            ITTPRDQ AF+DLL DGSQWGI++QYTVQPSPDGLAQAF+LG +FIG++P ALVLGDNIFYG GFT SLR+AA  + GASVFAYYVQDPERYGVV+F+  GVA+DIEEKPA+PRS YAVTGLYFYDN VVDIA GIRPSARGELEITDVN+AYLARGDLRVEVM RGTAWLDTGTHNSLLDAANFIRVVEERQGLKIACPEE+A+RMGYI
Sbjct:   59 ITTPRDQRAFTDLLGDGSQWGISLQYTVQPSPDGLAQAFILGREFIGSAPVALVLGDNIFYGHGFTDSLRSAAAREHGASVFAYYVQDPERYGVVTFDEAGVAIDIEEKPAQPRSSYAVTGLYFYDNDVVDIAAGIRPSARGELEITDVNRAYLARGDLRVEVMGRGTAWLDTGTHNSLLDAANFIRVVEERQGLKIACPEEIAFRMGYI 268
[Close]
BLAST of mRNA_M-pyrifera_M_contig106007.1286.1 vs. uniprot
Match: A0A2N5X8K1_9GAMM (Glucose-1-phosphate thymidylyltransferase n=4 Tax=Halieaceae TaxID=1706372 RepID=A0A2N5X8K1_9GAMM)

HSP 1 Score: 366 bits (940), Expect = 5.810e-126
Identity = 179/210 (85.24%), Postives = 192/210 (91.43%), Query Frame = 1 
Query:    1 ITTPRDQAAFSDLLADGSQWGINIQYTVQPSPDGLAQAFLLGADFIGNSPCALVLGDNIFYGGGFTQSLRNAAQSQSGASVFAYYVQDPERYGVVSFNAQGVAVDIEEKPARPRSHYAVTGLYFYDNAVVDIARGIRPSARGELEITDVNKAYLARGDLRVEVMSRGTAWLDTGTHNSLLDAANFIRVVEERQGLKIACPEEVAYRMGYI 630
            ITTPRDQAAF+DLL DGS+WGI+I YTVQPSPDGLAQAF+LG DFIG+   ALVLGDNIFYGGGFT  L+NAAQ QSGASVFAYYVQDPERYGVVSF+A GVA DIEEKPA P+SHYAVTGLYFYDN VVDIAR I+PS RGELEITDVNK Y+ RGDL VEVMSRG+AWLDTGTHNSLLDAANF+RVVEERQGLKIACPEEVA+RMGYI
Sbjct:   57 ITTPRDQAAFADLLGDGSKWGISITYTVQPSPDGLAQAFILGEDFIGDDKVALVLGDNIFYGGGFTLKLQNAAQRQSGASVFAYYVQDPERYGVVSFDANGVAQDIEEKPAAPKSHYAVTGLYFYDNDVVDIARNIKPSPRGELEITDVNKIYMQRGDLNVEVMSRGSAWLDTGTHNSLLDAANFVRVVEERQGLKIACPEEVAFRMGYI 266
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig106007.1286.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3C1KLL4_9GAMM1.630e-14698.57Glucose-1-phosphate thymidylyltransferase n=5 Tax=... [more]
A0A7W2TXR4_9GAMM1.410e-13187.14Glucose-1-phosphate thymidylyltransferase n=1 Tax=... [more]
A0A661HAC3_9GAMM5.260e-12986.67Glucose-1-phosphate thymidylyltransferase n=3 Tax=... [more]
UPI00167B68143.030e-12885.24glucose-1-phosphate thymidylyltransferase RfbA n=1... [more]
A0A2D5F6R4_9GAMM1.870e-12786.19Glucose-1-phosphate thymidylyltransferase n=1 Tax=... [more]
A0A2N5Y7I0_9GAMM2.400e-12785.71Glucose-1-phosphate thymidylyltransferase n=1 Tax=... [more]
A0A4R2KSR5_9GAMM2.570e-12785.24Glucose-1-phosphate thymidylyltransferase n=1 Tax=... [more]
A0A5C8ZY43_9GAMM1.010e-12685.24Glucose-1-phosphate thymidylyltransferase n=4 Tax=... [more]
A0A095VTU8_9GAMM1.080e-12685.24Glucose-1-phosphate thymidylyltransferase n=1 Tax=... [more]
A0A2N5X8K1_9GAMM5.810e-12685.24Glucose-1-phosphate thymidylyltransferase n=4 Tax=... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig106007contigM-pyrifera_M_contig106007:2..631 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score419.1
Seed ortholog evalue1.2e-114
Seed eggNOG ortholog1121937.AUHJ01000008_gene1990
Preferred namerfbA
KEGG rclassRC00002
KEGG koko:K00973
KEGG ReactionR02328
KEGG Pathwayko00521,ko00523,ko00525,ko01130,map00521,map00523,map00525,map01130
KEGG ModuleM00793
Hectar predicted targeting categoryother localisation
GOsGO:0000271,GO:0000287,GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005618,GO:0005623,GO:0005886,GO:0005975,GO:0005976,GO:0005996,GO:0006006,GO:0006139,GO:0006220,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008879,GO:0009058,GO:0009059,GO:0009117,GO:0009141,GO:0009147,GO:0009200,GO:0009211,GO:0009219,GO:0009225,GO:0009226,GO:0009262,GO:0009394,GO:0009987,GO:0016020,GO:0016051,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019299,GO:0019300,GO:0019305,GO:0019318,GO:0019319,GO:0019438,GO:0019637,GO:0019692,GO:0030312,GO:0033692,GO:0034637,GO:0034641,GO:0034645,GO:0034654,GO:0040007,GO:0043167,GO:0043169,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044262,GO:0044264,GO:0044271,GO:0044281,GO:0044283,GO:0044464,GO:0045226,GO:0046075,GO:0046364,GO:0046379,GO:0046383,GO:0046483,GO:0046872,GO:0055086,GO:0071704,GO:0071944,GO:0072527,GO:1901135,GO:1901137,GO:1901360,GO:1901362,GO:1901564,GO:1901576
EggNOG free text desc.Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis
EggNOG OGs1MU0X@1224,1RMTR@1236,4640A@72275,COG1209@1,COG1209@2
EC2.7.7.24
COG Functional cat.M
BiGG ReactioniNJ661.Rv0334
Best tax levelAlteromonadaceae
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons1
Model size630
Cds size630
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815569.3661363-CDS-M-pyrifera_M_contig106007:1..6311622815569.3661363-CDS-M-pyrifera_M_contig106007:1..631Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig106007 2..631 +
1692277468.147628-CDS-M-pyrifera_M_contig106007:1..6311692277468.147628-CDS-M-pyrifera_M_contig106007:1..631Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig106007 2..631 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig106007.1286.1prot_M-pyrifera_M_contig106007.1286.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig106007 2..631 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig106007.1286.1

>prot_M-pyrifera_M_contig106007.1286.1 ID=prot_M-pyrifera_M_contig106007.1286.1|Name=mRNA_M-pyrifera_M_contig106007.1286.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=210bp
ITTPRDQAAFSDLLADGSQWGINIQYTVQPSPDGLAQAFLLGADFIGNSP
CALVLGDNIFYGGGFTQSLRNAAQSQSGASVFAYYVQDPERYGVVSFNAQ
GVAVDIEEKPARPRSHYAVTGLYFYDNAVVDIARGIRPSARGELEITDVN
KAYLARGDLRVEVMSRGTAWLDTGTHNSLLDAANFIRVVEERQGLKIACP
EEVAYRMGYI
back to top

mRNA from alignment at M-pyrifera_M_contig106007:2..631+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig106007.1286.1 ID=mRNA_M-pyrifera_M_contig106007.1286.1|Name=mRNA_M-pyrifera_M_contig106007.1286.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=630bp|location=Sequence derived from alignment at M-pyrifera_M_contig106007:2..631+ (Macrocystis pyrifera P11B4 male)
ATCACCACACCGCGCGACCAGGCGGCCTTCAGCGACCTGCTGGCCGATGG
CAGCCAGTGGGGCATCAATATCCAGTACACGGTACAACCCAGCCCCGACG
GCCTGGCCCAGGCATTCCTGCTCGGCGCAGATTTTATCGGCAACAGCCCC
TGTGCGCTGGTGCTGGGCGACAACATTTTCTACGGCGGCGGTTTCACCCA
GAGCCTGCGCAATGCCGCCCAAAGCCAGTCGGGAGCCTCGGTGTTCGCCT
ATTACGTGCAGGACCCTGAGCGCTACGGTGTTGTCAGCTTCAATGCCCAG
GGTGTCGCGGTGGACATCGAGGAGAAGCCGGCACGGCCACGCTCCCACTA
TGCCGTGACCGGCCTCTACTTCTACGATAACGCCGTGGTGGATATTGCCC
GGGGCATTCGACCTTCGGCCCGTGGCGAGCTGGAAATCACCGACGTCAAC
AAGGCCTACCTCGCACGCGGCGATCTGCGGGTAGAAGTGATGAGCCGGGG
CACCGCCTGGCTGGATACCGGCACGCACAACTCGCTGCTGGATGCGGCCA
ACTTTATCCGCGTGGTGGAAGAGCGCCAGGGCCTGAAAATAGCCTGCCCC
GAGGAGGTCGCCTACCGCATGGGCTACATC
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig106007:2..631+

>mRNA_M-pyrifera_M_contig106007.1286.1 ID=mRNA_M-pyrifera_M_contig106007.1286.1|Name=mRNA_M-pyrifera_M_contig106007.1286.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1260bp|location=Sequence derived from alignment at M-pyrifera_M_contig106007:2..631+ (Macrocystis pyrifera P11B4 male)
ATCACCACACCGCGCGACCAGGCGGCCTTCAGCGACCTGCTGGCCGATGG
CAGCCAGTGGGGCATCAATATCCAGTACACGGTACAACCCAGCCCCGACG
GCCTGGCCCAGGCATTCCTGCTCGGCGCAGATTTTATCGGCAACAGCCCC
TGTGCGCTGGTGCTGGGCGACAACATTTTCTACGGCGGCGGTTTCACCCA
GAGCCTGCGCAATGCCGCCCAAAGCCAGTCGGGAGCCTCGGTGTTCGCCT
ATTACGTGCAGGACCCTGAGCGCTACGGTGTTGTCAGCTTCAATGCCCAG
GGTGTCGCGGTGGACATCGAGGAGAAGCCGGCACGGCCACGCTCCCACTA
TGCCGTGACCGGCCTCTACTTCTACGATAACGCCGTGGTGGATATTGCCC
GGGGCATTCGACCTTCGGCCCGTGGCGAGCTGGAAATCACCGACGTCAAC
AAGGCCTACCTCGCACGCGGCGATCTGCGGGTAGAAGTGATGAGCCGGGG
CACCGCCTGGCTGGATACCGGCACGCACAACTCGCTGCTGGATGCGGCCA
ACTTTATCCGCGTGGTGGAAGAGCGCCAGGGCCTGAAAATAGCCTGCCCC
GAGGAGGTCGCCTACCGCATGGGCTACATCATCACCACACCGCGCGACCA
GGCGGCCTTCAGCGACCTGCTGGCCGATGGCAGCCAGTGGGGCATCAATA
TCCAGTACACGGTACAACCCAGCCCCGACGGCCTGGCCCAGGCATTCCTG
CTCGGCGCAGATTTTATCGGCAACAGCCCCTGTGCGCTGGTGCTGGGCGA
CAACATTTTCTACGGCGGCGGTTTCACCCAGAGCCTGCGCAATGCCGCCC
AAAGCCAGTCGGGAGCCTCGGTGTTCGCCTATTACGTGCAGGACCCTGAG
CGCTACGGTGTTGTCAGCTTCAATGCCCAGGGTGTCGCGGTGGACATCGA
GGAGAAGCCGGCACGGCCACGCTCCCACTATGCCGTGACCGGCCTCTACT
TCTACGATAACGCCGTGGTGGATATTGCCCGGGGCATTCGACCTTCGGCC
CGTGGCGAGCTGGAAATCACCGACGTCAACAAGGCCTACCTCGCACGCGG
CGATCTGCGGGTAGAAGTGATGAGCCGGGGCACCGCCTGGCTGGATACCG
GCACGCACAACTCGCTGCTGGATGCGGCCAACTTTATCCGCGTGGTGGAA
GAGCGCCAGGGCCTGAAAATAGCCTGCCCCGAGGAGGTCGCCTACCGCAT
GGGCTACATC
back to top