mRNA_M-pyrifera_M_contig105924.1269.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig105924.1269.1
Unique NamemRNA_M-pyrifera_M_contig105924.1269.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig105924.1269.1 vs. uniprot
Match: A0A2E7RW04_9PLAN (Chromosome partitioning protein ParA n=2 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A2E7RW04_9PLAN)

HSP 1 Score: 132 bits (332), Expect = 6.890e-36
Identity = 65/103 (63.11%), Postives = 76/103 (73.79%), Query Frame = 1
Query:    4 HVSPFLPMDMDYRWRITSPTDTLTVAIVNERSGRRVFDATLSLHRRPITSFNLFRAMTRHPLMTAQVSAAIYRQALRLWWRGATFYPHPEHDAAAKEDRHDQS 312
            HVSPF+ MD DY W+IT P  TL+V I N R+G R F+ATLSL RRPITS NL  A+ RHPLMTA+V  AIY QA+RLWWRGATF PHP+H  AA     +Q+
Sbjct:  163 HVSPFMTMDFDYHWQITPPGRTLSVHIENWRTGHRAFEATLSLQRRPITSKNLAAALARHPLMTARVFLAIYWQAVRLWWRGATFQPHPKHTDAASPGNGEQA 265          
BLAST of mRNA_M-pyrifera_M_contig105924.1269.1 vs. uniprot
Match: A0A2E0B5P2_9BACT (Chromosome partitioning protein ParA n=2 Tax=Planctomycetia TaxID=203683 RepID=A0A2E0B5P2_9BACT)

HSP 1 Score: 118 bits (296), Expect = 1.670e-30
Identity = 53/90 (58.89%), Postives = 66/90 (73.33%), Query Frame = 1
Query:    1 FHVSPFLPMDMDYRWRITSPTDTLTVAIVNERSGRRVFDATLSLHRRPITSFNLFRAMTRHPLMTAQVSAAIYRQALRLWWRGATFYPHP 270
            FHVSPF+PMDM YRW+++ P   L+VAI N R G +VFDA L+L RR I  +NL R + R P MTAQ++ AIY QALRLWW+G  F+ HP
Sbjct:  154 FHVSPFMPMDMQYRWKLSRPDGELSVAIENYREGEQVFDAALNLQRRAINGWNLSRVLLRFPFMTAQITGAIYFQALRLWWKGCPFHAHP 243          
BLAST of mRNA_M-pyrifera_M_contig105924.1269.1 vs. uniprot
Match: UPI0019934BCE (DUF1365 domain-containing protein n=1 Tax=Pirellulaceae bacterium TaxID=2699754 RepID=UPI0019934BCE)

HSP 1 Score: 115 bits (287), Expect = 3.220e-30
Identity = 54/90 (60.00%), Postives = 70/90 (77.78%), Query Frame = 1
Query:    1 FHVSPFLPMDMDYRWRITSPTDTLTVAIVNERSGRRVFDATLSLHRRPITSFNLFRAMTRHPLMTAQVSAAIYRQALRLWWRGATFYPHP 270
            FHVSPFLPMDM Y+W+ ++P + L V I  +R  R VF AT+SL RRP ++ NL RA+ R PLMT +V+AAIY QAL+LWW+GAT++PHP
Sbjct:   76 FHVSPFLPMDMTYQWQFSAPAEQLKVHIEAQRQDRPVFAATMSLARRPWSTANLRRALWRFPLMTHRVAAAIYWQALQLWWKGATYHPHP 165          
BLAST of mRNA_M-pyrifera_M_contig105924.1269.1 vs. uniprot
Match: A0A5C5W8C7_9PLAN (Uncharacterized protein n=1 Tax=Thalassoglobus neptunius TaxID=1938619 RepID=A0A5C5W8C7_9PLAN)

HSP 1 Score: 116 bits (291), Expect = 5.990e-30
Identity = 52/91 (57.14%), Postives = 67/91 (73.63%), Query Frame = 1
Query:    1 FHVSPFLPMDMDYRWRITSPTDTLTVAIVNERSGRRVFDATLSLHRRPITSFNLFRAMTRHPLMTAQVSAAIYRQALRLWWRGATFYPHPE 273
            F+VSPFLPM+M YRW++T P ++L V+I N  S  R F A L+L RR IT+ NLF  + RHP MT +V AAIY QAL+LWWRG  ++PHP+
Sbjct:  167 FYVSPFLPMEMQYRWQLTLPKESLAVSIENRHSNERQFSAQLTLARRQITTMNLFGTLLRHPFMTGKVVAAIYWQALKLWWRGVQYFPHPK 257          
BLAST of mRNA_M-pyrifera_M_contig105924.1269.1 vs. uniprot
Match: A0A1P8WA18_9PLAN (Uncharacterized protein n=1 Tax=Fuerstiella marisgermanici TaxID=1891926 RepID=A0A1P8WA18_9PLAN)

HSP 1 Score: 115 bits (288), Expect = 2.090e-29
Identity = 54/96 (56.25%), Postives = 63/96 (65.62%), Query Frame = 1
Query:    1 FHVSPFLPMDMDYRWRITSPTDTLTVAIVNERSGRRVFDATLSLHRRPITSFNLFRAMTRHPLMTAQVSAAIYRQALRLWWRGATFYPHPEHDAAA 288
            FHVSPFL M M Y W I  P D L++ + N     R FDA+LSL RR IT  NL RA+ R P MT Q++A+IY QALRLWW+  TFYPHP    AA
Sbjct:  161 FHVSPFLSMGMTYHWTIRPPGDHLSIHVENRAESERAFDASLSLRRREITGLNLARALVRFPFMTGQIAASIYWQALRLWWKNVTFYPHPAKSLAA 256          
BLAST of mRNA_M-pyrifera_M_contig105924.1269.1 vs. uniprot
Match: A0A7V2HF26_9BACT (DUF1365 domain-containing protein n=1 Tax=Bryobacteraceae bacterium TaxID=2212468 RepID=A0A7V2HF26_9BACT)

HSP 1 Score: 115 bits (287), Expect = 2.220e-29
Identity = 54/90 (60.00%), Postives = 67/90 (74.44%), Query Frame = 1
Query:    1 FHVSPFLPMDMDYRWRITSPTDTLTVAIVNERSGRRVFDATLSLHRRPITSFNLFRAMTRHPLMTAQVSAAIYRQALRLWWRGATFYPHP 270
            FHVSPF PM+ +Y WR T P   L + + N  SGR+VFDAT++L RRP+T+ +L RA+ R+P MTAQV AAIY QALRLW RG  F+PHP
Sbjct:  158 FHVSPFFPMEQEYDWRFTMPGPDLFIHMDNLESGRKVFDATMTLRRRPLTAASLARALCRYPAMTAQVIAAIYWQALRLWLRGCPFHPHP 247          
BLAST of mRNA_M-pyrifera_M_contig105924.1269.1 vs. uniprot
Match: A0A3E0PW62_9BACT (DUF1365 domain-containing protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3E0PW62_9BACT)

HSP 1 Score: 112 bits (280), Expect = 4.780e-28
Identity = 50/90 (55.56%), Postives = 65/90 (72.22%), Query Frame = 1
Query:    1 FHVSPFLPMDMDYRWRITSPTDTLTVAIVNERSGRRVFDATLSLHRRPITSFNLFRAMTRHPLMTAQVSAAIYRQALRLWWRGATFYPHP 270
            FHVSPFLPM+M YRW + +P D L++ I N       F A+L L RRP+T++ L R + R+PLMTAQV+A IY QA+RLWW+G  F+PHP
Sbjct:  167 FHVSPFLPMEMSYRWAVATPGDRLSIHIANLCGEDEQFHASLDLKRRPVTTWQLSRMLVRYPLMTAQVAAGIYWQAVRLWWKGVPFHPHP 256          
BLAST of mRNA_M-pyrifera_M_contig105924.1269.1 vs. uniprot
Match: A0A5C5Z4G1_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium CA13 TaxID=2527986 RepID=A0A5C5Z4G1_9BACT)

HSP 1 Score: 111 bits (278), Expect = 7.430e-28
Identity = 50/91 (54.95%), Postives = 66/91 (72.53%), Query Frame = 1
Query:    1 FHVSPFLPMDMDYRWRITSPTDTLTVAIVNERSGRRVFDATLSLHRRPITSFNLFRAMTRHPLMTAQVSAAIYRQALRLWWRGATFYPHPE 273
            FHVSPF+ MDM Y+WR+TSPT   T+ + N +  R+VFDA+++L RR +T   L R  TR+ LMTA++  AIY QALRLWW+   FYPHP+
Sbjct:  165 FHVSPFMQMDMQYQWRVTSPTKHATIQLSNFQESRKVFDASMTLQRRELTKRELRRMTTRYFLMTARIGVAIYFQALRLWWKKCPFYPHPK 255          
BLAST of mRNA_M-pyrifera_M_contig105924.1269.1 vs. uniprot
Match: A0A517WWR7_9PLAN (Uncharacterized protein n=4 Tax=Gimesia aquarii TaxID=2527964 RepID=A0A517WWR7_9PLAN)

HSP 1 Score: 110 bits (275), Expect = 7.440e-28
Identity = 52/98 (53.06%), Postives = 67/98 (68.37%), Query Frame = 1
Query:    1 FHVSPFLPMDMDYRWRITSPTDTLTVAIVNERSGRRVFDATLSLHRRPITSFNLFRAMTRHPLMTAQVSAAIYRQALRLWWRGATFYPHPEHDAAAKE 294
            FHVSPF+PMDM Y WR++ P DTL V I N +  ++ FD T+ L RR ITS +L R++ R PLMT  V  AIY QALRLW +   FYPHP+H  + ++
Sbjct:  128 FHVSPFMPMDMQYYWRLSEPQDTLMVNIENHQLEQKKFDVTMRLQRREITSASLMRSLLRFPLMTFYVFVAIYWQALRLWIKRVPFYPHPKHSKSTEQ 225          
BLAST of mRNA_M-pyrifera_M_contig105924.1269.1 vs. uniprot
Match: A0A517Q812_9PLAN (Uncharacterized protein n=6 Tax=Gimesia panareensis TaxID=2527978 RepID=A0A517Q812_9PLAN)

HSP 1 Score: 109 bits (273), Expect = 1.660e-27
Identity = 51/92 (55.43%), Postives = 62/92 (67.39%), Query Frame = 1
Query:    1 FHVSPFLPMDMDYRWRITSPTDTLTVAIVNERSGRRVFDATLSLHRRPITSFNLFRAMTRHPLMTAQVSAAIYRQALRLWWRGATFYPHPEH 276
            FHVSPF+P+DM Y WR+T P   LTV I N R   +VFD T+ L RR I++ NL+R +  +PLMT  V AAIY QA RLWW+   FY HP H
Sbjct:  128 FHVSPFMPLDMQYGWRLTEPERKLTVHIDNYRENEKVFDVTMQLERREISTGNLWRVLLGYPLMTWYVFAAIYWQAFRLWWKRVPFYSHPRH 219          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig105924.1269.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2E7RW04_9PLAN6.890e-3663.11Chromosome partitioning protein ParA n=2 Tax=Planc... [more]
A0A2E0B5P2_9BACT1.670e-3058.89Chromosome partitioning protein ParA n=2 Tax=Planc... [more]
UPI0019934BCE3.220e-3060.00DUF1365 domain-containing protein n=1 Tax=Pirellul... [more]
A0A5C5W8C7_9PLAN5.990e-3057.14Uncharacterized protein n=1 Tax=Thalassoglobus nep... [more]
A0A1P8WA18_9PLAN2.090e-2956.25Uncharacterized protein n=1 Tax=Fuerstiella marisg... [more]
A0A7V2HF26_9BACT2.220e-2960.00DUF1365 domain-containing protein n=1 Tax=Bryobact... [more]
A0A3E0PW62_9BACT4.780e-2855.56DUF1365 domain-containing protein n=1 Tax=Planctom... [more]
A0A5C5Z4G1_9BACT7.430e-2854.95Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
A0A517WWR7_9PLAN7.440e-2853.06Uncharacterized protein n=4 Tax=Gimesia aquarii Ta... [more]
A0A517Q812_9PLAN1.660e-2755.43Uncharacterized protein n=6 Tax=Gimesia panareensi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig105924contigM-pyrifera_M_contig105924:3..326 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score92.0
Seed ortholog evalue1.6e-16
Seed eggNOG ortholog314230.DSM3645_27738
KEGG koko:K00574,ko:K09701
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Protein of unknown function (DUF1365)
EggNOG OGs2IZ60@203682,COG3496@1,COG3496@2
EC2.1.1.79
COG Functional cat.S
Best tax levelPlanctomycetes
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Exons1
Model size324
Cds size300
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815568.3292997-UTR-M-pyrifera_M_contig105924:2..261622815568.3292997-UTR-M-pyrifera_M_contig105924:2..26Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig105924 3..26 +
1692277467.6418822-UTR-M-pyrifera_M_contig105924:2..261692277467.6418822-UTR-M-pyrifera_M_contig105924:2..26Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig105924 3..26 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815568.346032-CDS-M-pyrifera_M_contig105924:26..3261622815568.346032-CDS-M-pyrifera_M_contig105924:26..326Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig105924 27..326 +
1692277467.6540337-CDS-M-pyrifera_M_contig105924:26..3261692277467.6540337-CDS-M-pyrifera_M_contig105924:26..326Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig105924 27..326 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig105924.1269.1prot_M-pyrifera_M_contig105924.1269.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig105924 27..326 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig105924.1269.1

>prot_M-pyrifera_M_contig105924.1269.1 ID=prot_M-pyrifera_M_contig105924.1269.1|Name=mRNA_M-pyrifera_M_contig105924.1269.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=100bp
MDMDYRWRITSPTDTLTVAIVNERSGRRVFDATLSLHRRPITSFNLFRAM
TRHPLMTAQVSAAIYRQALRLWWRGATFYPHPEHDAAAKEDRHDQSRGNR
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mRNA from alignment at M-pyrifera_M_contig105924:3..326+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig105924.1269.1 ID=mRNA_M-pyrifera_M_contig105924.1269.1|Name=mRNA_M-pyrifera_M_contig105924.1269.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=324bp|location=Sequence derived from alignment at M-pyrifera_M_contig105924:3..326+ (Macrocystis pyrifera P11B4 male)
TTCCATGTCTCGCCCTTCCTGCCGATGGACATGGATTACCGATGGCGCAT CACTTCGCCAACTGACACGCTGACCGTCGCCATCGTCAACGAGCGGTCGG GACGGCGCGTGTTCGATGCAACACTGTCGCTGCACCGTCGGCCGATCACA TCCTTCAACTTATTCCGAGCAATGACTCGGCATCCGCTGATGACTGCACA GGTGTCCGCTGCCATCTACAGGCAGGCTCTACGGCTCTGGTGGAGAGGCG CCACGTTCTATCCGCATCCGGAACACGACGCGGCTGCCAAGGAGGATCGC CACGATCAGTCTCGCGGGAATCGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig105924:3..326+

>mRNA_M-pyrifera_M_contig105924.1269.1 ID=mRNA_M-pyrifera_M_contig105924.1269.1|Name=mRNA_M-pyrifera_M_contig105924.1269.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=600bp|location=Sequence derived from alignment at M-pyrifera_M_contig105924:3..326+ (Macrocystis pyrifera P11B4 male)
ATGGACATGGATTACCGATGGCGCATCACTTCGCCAACTGACACGCTGAC
CGTCGCCATCGTCAACGAGCGGTCGGGACGGCGCGTGTTCGATGCAACAC
TGTCGCTGCACCGTCGGCCGATCACATCCTTCAACTTATTCCGAGCAATG
ACTCGGCATCCGCTGATGACTGCACAGGTGTCCGCTGCCATCTACAGGCA
GGCTCTACGGCTCTGGTGGAGAGGCGCCACGTTCTATCCGCATCCGGAAC
ACGACGCGGCTGCCAAGGAGGATCGCCACGATCAGTCTCGCGGGAATCGA
ATGGACATGGATTACCGATGGCGCATCACTTCGCCAACTGACACGCTGAC
CGTCGCCATCGTCAACGAGCGGTCGGGACGGCGCGTGTTCGATGCAACAC
TGTCGCTGCACCGTCGGCCGATCACATCCTTCAACTTATTCCGAGCAATG
ACTCGGCATCCGCTGATGACTGCACAGGTGTCCGCTGCCATCTACAGGCA
GGCTCTACGGCTCTGGTGGAGAGGCGCCACGTTCTATCCGCATCCGGAAC
ACGACGCGGCTGCCAAGGAGGATCGCCACGATCAGTCTCGCGGGAATCGA
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