mRNA_M-pyrifera_M_contig105911.1263.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig105911.1263.1
Unique NamemRNA_M-pyrifera_M_contig105911.1263.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig105911.1263.1 vs. uniprot
Match: A0A2D5S8M4_9PLAN (RNA polymerase subunit sigma n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A2D5S8M4_9PLAN)

HSP 1 Score: 115 bits (288), Expect = 2.170e-30
Identity = 53/99 (53.54%), Postives = 77/99 (77.78%), Query Frame = 1
Query:    1 DKGRLKRGGDYRRIDLDQIEVATDVPDDGLLDMDDCITRLTAEYPECATLVKLRFFAGLTLNEAAIAAGISTSTAKRQWTFARAWLYDAMRPQAESTNA 297
            DKGR+KRGG++++IDL++IE+A D P++ LL +D+ I  L  E P CA +V +RFFAGL+++EAA A GIS STAKR WT+ARAWL+D ++    S+++
Sbjct:   93 DKGRIKRGGEFQKIDLEKIEIALDAPNEDLLAIDEAIESLVEENPACAKVVMMRFFAGLSIDEAAAALGISASTAKRHWTYARAWLFDVLQADDSSSSS 191          
BLAST of mRNA_M-pyrifera_M_contig105911.1263.1 vs. uniprot
Match: A0A8J7TWI8_9BACT (Sigma-70 family RNA polymerase sigma factor n=1 Tax=Zavarzinella sp. TaxID=1914240 RepID=A0A8J7TWI8_9BACT)

HSP 1 Score: 114 bits (285), Expect = 5.400e-30
Identity = 56/91 (61.54%), Postives = 69/91 (75.82%), Query Frame = 1
Query:    1 DKGRLKRGGDYRRIDLDQIEVATDVPDDGLLDMDDCITRLTAEYPECATLVKLRFFAGLTLNEAAIAAGISTSTAKRQWTFARAWLYDAMR 273
            DK RLKRGGD RR+DLDQ+E+A DV D  L+ +DD +T L AE P+ A LV LRFFAGLTL +AA   G+S+ TA+RQW +ARAWLY  +R
Sbjct:   93 DKNRLKRGGDRRRVDLDQVEIALDVDDGQLVALDDALTELAAEDPDAARLVNLRFFAGLTLRDAAALQGLSSRTAERQWAYARAWLYARLR 183          
BLAST of mRNA_M-pyrifera_M_contig105911.1263.1 vs. uniprot
Match: A0A2D6SSL6_9PLAN (RNA polymerase subunit sigma n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A2D6SSL6_9PLAN)

HSP 1 Score: 110 bits (276), Expect = 1.440e-28
Identity = 54/96 (56.25%), Postives = 71/96 (73.96%), Query Frame = 1
Query:    1 DKGRLKRGGDYRRIDLDQIEVATDVPDDGLLDMDDCITRLTAEYPECATLVKLRFFAGLTLNEAAIAAGISTSTAKRQWTFARAWLYDAMRPQAES 288
            DKGRLKRGG   R+DLD++E+A D P   LL +D+ + +L  E  ECA LVK+RFFAGL+++E+A A GIST TAKR   +ARAWL++A+RP   S
Sbjct:   94 DKGRLKRGGHLERVDLDRVEIAIDTPSGDLLALDEALKQLAEENEECAALVKIRFFAGLSVDESATALGISTRTAKRHSAYARAWLFEALRPDDTS 189          
BLAST of mRNA_M-pyrifera_M_contig105911.1263.1 vs. uniprot
Match: A0A838QMD9_9BACT (Sigma-70 family RNA polymerase sigma factor n=1 Tax=Pirellulales bacterium TaxID=2715253 RepID=A0A838QMD9_9BACT)

HSP 1 Score: 103 bits (258), Expect = 7.420e-26
Identity = 55/99 (55.56%), Postives = 66/99 (66.67%), Query Frame = 1
Query:    1 DKGRLKRGGDYRRIDLDQIEVATDVPDDGLLDMDDCITRLTAEYPECATLVKLRFFAGLTLNEAAIAAGISTSTAKRQWTFARAWLYDAMRPQAESTNA 297
            DK RLKRGG   R+DLD IE+A D PD+ L+++DD I  L +E    A LVKLRFFAGLTL EAA + GI   TA R W +ARAWLYD +     S +A
Sbjct:   94 DKNRLKRGGQRHRLDLDHIEIALDSPDEDLIELDDAIQALASEDEVGANLVKLRFFAGLTLGEAAESLGIPRRTADRHWAYARAWLYDQLSGGDASQDA 192          
BLAST of mRNA_M-pyrifera_M_contig105911.1263.1 vs. uniprot
Match: A0A6P2CU56_9BACT (Uncharacterized protein n=2 Tax=Gemmata massiliana TaxID=1210884 RepID=A0A6P2CU56_9BACT)

HSP 1 Score: 103 bits (256), Expect = 1.210e-25
Identity = 53/97 (54.64%), Postives = 67/97 (69.07%), Query Frame = 1
Query:    4 KGRLKRGGDYRRIDLDQIEVATDVPDDGLLDMDDCITRLTAEYPECATLVKLRFFAGLTLNEAAIAAGISTSTAKRQWTFARAWLYDAMRPQAESTN 294
            KGR+KRGGD RR+DLD  EV    P D +L +D+ +TRLTAE PE A +V+L FFAGL++  AA   G+S +TA RQWT+AR+WL  AM    E T 
Sbjct:   88 KGRVKRGGDQRRVDLDDFEVTVGPPADEILALDEALTRLTAEDPEAARVVQLHFFAGLSVERAAEVLGVSRATAYRQWTYARSWLRCAMGGGDEPTG 184          
BLAST of mRNA_M-pyrifera_M_contig105911.1263.1 vs. uniprot
Match: A0A3E0PL85_9BACT (RNA polymerase subunit sigma n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3E0PL85_9BACT)

HSP 1 Score: 103 bits (256), Expect = 1.280e-25
Identity = 49/92 (53.26%), Postives = 68/92 (73.91%), Query Frame = 1
Query:    4 KGRLKRGGDYRRIDLDQIEVATDVPDDGLLDMDDCITRLTAEYPECATLVKLRFFAGLTLNEAAIAAGISTSTAKRQWTFARAWLYDAMRPQ 279
            + RLKRGG ++R+ LD+++VA +  DD LL +D+ +T+L  E+P+ A LVKLRFFAGLT  +AA A GIS  TA R W FARAWLY +++ +
Sbjct:   94 RNRLKRGGGWQRVSLDELDVADNASDDDLLALDEALTQLAREHPQAAELVKLRFFAGLTTEDAARALGISLRTANRHWAFARAWLYRSLQAE 185          
BLAST of mRNA_M-pyrifera_M_contig105911.1263.1 vs. uniprot
Match: UPI001474BB5D (ECF-type sigma factor n=1 Tax=Tautonia rosea TaxID=2728037 RepID=UPI001474BB5D)

HSP 1 Score: 99.8 bits (247), Expect = 3.510e-24
Identity = 50/93 (53.76%), Postives = 63/93 (67.74%), Query Frame = 1
Query:    4 KGRLKRGGDYRRIDLDQIEVATDVPDDGLLDMDDCITRLTAEYPECATLVKLRFFAGLTLNEAAIAAGISTSTAKRQWTFARAWLYDAMRPQA 282
            KGRLKRGG  RR+DLD++++  +  D  LL +D+ + RL  E PECA +VKLRFFAGL+  E A A GIS  TA R W +ARAWL  A+   A
Sbjct:   94 KGRLKRGGGLRRVDLDRVDIEAETDDLDLLALDEALARLADEEPECARVVKLRFFAGLSQEEVAEALGISRRTADRYWAYARAWLLHALEADA 186          
BLAST of mRNA_M-pyrifera_M_contig105911.1263.1 vs. uniprot
Match: A0A2D6SYG3_9PLAN (RNA polymerase subunit sigma n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A2D6SYG3_9PLAN)

HSP 1 Score: 98.6 bits (244), Expect = 8.780e-24
Identity = 49/95 (51.58%), Postives = 66/95 (69.47%), Query Frame = 1
Query:    4 KGRLKRGGDYRRIDLDQIEVATDVPDDGLLDMDDCITRLTAEYPECATLVKLRFFAGLTLNEAAIAAGISTSTAKRQWTFARAWLYDAMRPQAES 288
            K R++ GG ++R DLD+ E+   +P D LL +D+ + RL    P+ A LVKLRFFAGLTL +AA A G+S +TA R WT+ARAWLYDA+    +S
Sbjct:   94 KSRVRHGGAHQRSDLDEAEIVISMPTDRLLALDEALGRLAEVEPQKAELVKLRFFAGLTLEQAADAIGVSRATATRHWTYARAWLYDAVSQSQDS 188          
BLAST of mRNA_M-pyrifera_M_contig105911.1263.1 vs. uniprot
Match: UPI00141FC79E (ECF-type sigma factor n=1 Tax=Rubinisphaera sp. JC658 TaxID=2713176 RepID=UPI00141FC79E)

HSP 1 Score: 95.5 bits (236), Expect = 1.240e-22
Identity = 46/91 (50.55%), Postives = 63/91 (69.23%), Query Frame = 1
Query:    1 DKGRLKRGGDYRRIDLDQIEVATDVPDDGLLDMDDCITRLTAEYPECATLVKLRFFAGLTLNEAAIAAGISTSTAKRQWTFARAWLYDAMR 273
            DK RLKRGGD RR+DL  I +A + P D L+D+D+ I  L+ + P  A L+KLRFFAGL+L +A+ + G++     R W FARAWL+D +R
Sbjct:   92 DKKRLKRGGDRRRVDLSTISLALETPPDVLIDLDEAIEALSLQDPTAAQLIKLRFFAGLSLKDASASLGLTRRQGDRLWAFARAWLFDRLR 182          
BLAST of mRNA_M-pyrifera_M_contig105911.1263.1 vs. uniprot
Match: A0A5C6CDB8_9BACT (ECF sigma factor n=1 Tax=Novipirellula artificiosorum TaxID=2528016 RepID=A0A5C6CDB8_9BACT)

HSP 1 Score: 95.5 bits (236), Expect = 1.270e-22
Identity = 52/88 (59.09%), Postives = 59/88 (67.05%), Query Frame = 1
Query:    1 DKGRLKRGGDYRRIDLDQIEVATDVPDDGLLDMDDCITRLTAEYPECATLVKLRFFAGLTLNEAAIAAGISTSTAKRQWTFARAWLYD 264
            DKGRLKRGGD +RI+LD + VA       LL  D  + +LT E   CA LVKLRFFAGLT  EAA A GI+  TA R W +ARAWLYD
Sbjct:   93 DKGRLKRGGDRKRINLDAVTVAVTSDPADLLAFDQALEQLTDEDAVCAKLVKLRFFAGLTQGEAADALGIARRTADRYWAYARAWLYD 180          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig105911.1263.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2D5S8M4_9PLAN2.170e-3053.54RNA polymerase subunit sigma n=1 Tax=Planctomyceta... [more]
A0A8J7TWI8_9BACT5.400e-3061.54Sigma-70 family RNA polymerase sigma factor n=1 Ta... [more]
A0A2D6SSL6_9PLAN1.440e-2856.25RNA polymerase subunit sigma n=1 Tax=Planctomyceta... [more]
A0A838QMD9_9BACT7.420e-2655.56Sigma-70 family RNA polymerase sigma factor n=1 Ta... [more]
A0A6P2CU56_9BACT1.210e-2554.64Uncharacterized protein n=2 Tax=Gemmata massiliana... [more]
A0A3E0PL85_9BACT1.280e-2553.26RNA polymerase subunit sigma n=1 Tax=Planctomycete... [more]
UPI001474BB5D3.510e-2453.76ECF-type sigma factor n=1 Tax=Tautonia rosea TaxID... [more]
A0A2D6SYG3_9PLAN8.780e-2451.58RNA polymerase subunit sigma n=1 Tax=Planctomyceta... [more]
UPI00141FC79E1.240e-2250.55ECF-type sigma factor n=1 Tax=Rubinisphaera sp. JC... [more]
A0A5C6CDB8_9BACT1.270e-2259.09ECF sigma factor n=1 Tax=Novipirellula artificioso... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig105911contigM-pyrifera_M_contig105911:3..302 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score94.4
Seed ortholog evalue3.3e-17
Seed eggNOG ortholog1123242.JH636435_gene2023
KEGG koko:K02405
KEGG Pathwayko02020,ko02025,ko02026,ko02040,ko05111,map02020,map02025,map02026,map02040,map05111
Hectar predicted targeting categoryother localisation
EggNOG free text desc.COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog
EggNOG OGs2IZAB@203682,COG1595@1,COG1595@2
COG Functional cat.K
Best tax levelPlanctomycetes
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02035,ko03021
Exons1
Model size300
Cds size300
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815568.0965977-CDS-M-pyrifera_M_contig105911:2..3021622815568.0965977-CDS-M-pyrifera_M_contig105911:2..302Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig105911 3..302 +
1692277467.557988-CDS-M-pyrifera_M_contig105911:2..3021692277467.557988-CDS-M-pyrifera_M_contig105911:2..302Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig105911 3..302 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig105911.1263.1prot_M-pyrifera_M_contig105911.1263.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig105911 3..302 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig105911.1263.1

>prot_M-pyrifera_M_contig105911.1263.1 ID=prot_M-pyrifera_M_contig105911.1263.1|Name=mRNA_M-pyrifera_M_contig105911.1263.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=100bp
DKGRLKRGGDYRRIDLDQIEVATDVPDDGLLDMDDCITRLTAEYPECATL
VKLRFFAGLTLNEAAIAAGISTSTAKRQWTFARAWLYDAMRPQAESTNA*
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mRNA from alignment at M-pyrifera_M_contig105911:3..302+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig105911.1263.1 ID=mRNA_M-pyrifera_M_contig105911.1263.1|Name=mRNA_M-pyrifera_M_contig105911.1263.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=300bp|location=Sequence derived from alignment at M-pyrifera_M_contig105911:3..302+ (Macrocystis pyrifera P11B4 male)
GATAAGGGGCGGCTGAAACGCGGCGGAGACTACCGTCGGATTGATCTGGA TCAAATCGAAGTCGCGACGGATGTCCCCGACGATGGTTTACTGGACATGG ACGATTGCATTACCCGTCTGACCGCTGAGTACCCTGAGTGTGCCACACTC GTCAAGCTCCGATTCTTCGCCGGTTTGACATTGAATGAGGCTGCCATCGC TGCCGGAATTTCAACGAGTACCGCCAAGCGTCAGTGGACGTTCGCTCGGG CCTGGCTTTATGACGCAATGCGGCCACAAGCAGAGTCGACAAACGCCTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig105911:3..302+

>mRNA_M-pyrifera_M_contig105911.1263.1 ID=mRNA_M-pyrifera_M_contig105911.1263.1|Name=mRNA_M-pyrifera_M_contig105911.1263.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=600bp|location=Sequence derived from alignment at M-pyrifera_M_contig105911:3..302+ (Macrocystis pyrifera P11B4 male)
GATAAGGGGCGGCTGAAACGCGGCGGAGACTACCGTCGGATTGATCTGGA
TCAAATCGAAGTCGCGACGGATGTCCCCGACGATGGTTTACTGGACATGG
ACGATTGCATTACCCGTCTGACCGCTGAGTACCCTGAGTGTGCCACACTC
GTCAAGCTCCGATTCTTCGCCGGTTTGACATTGAATGAGGCTGCCATCGC
TGCCGGAATTTCAACGAGTACCGCCAAGCGTCAGTGGACGTTCGCTCGGG
CCTGGCTTTATGACGCAATGCGGCCACAAGCAGAGTCGACAAACGCCTGA
GATAAGGGGCGGCTGAAACGCGGCGGAGACTACCGTCGGATTGATCTGGA
TCAAATCGAAGTCGCGACGGATGTCCCCGACGATGGTTTACTGGACATGG
ACGATTGCATTACCCGTCTGACCGCTGAGTACCCTGAGTGTGCCACACTC
GTCAAGCTCCGATTCTTCGCCGGTTTGACATTGAATGAGGCTGCCATCGC
TGCCGGAATTTCAACGAGTACCGCCAAGCGTCAGTGGACGTTCGCTCGGG
CCTGGCTTTATGACGCAATGCGGCCACAAGCAGAGTCGACAAACGCCTGA
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