mRNA_M-pyrifera_M_contig105911.1263.1 (mRNA) Macrocystis pyrifera P11B4 male
Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig105911.1263.1 vs. uniprot
Match: A0A2D5S8M4_9PLAN (RNA polymerase subunit sigma n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A2D5S8M4_9PLAN) HSP 1 Score: 115 bits (288), Expect = 2.170e-30 Identity = 53/99 (53.54%), Postives = 77/99 (77.78%), Query Frame = 1 Query: 1 DKGRLKRGGDYRRIDLDQIEVATDVPDDGLLDMDDCITRLTAEYPECATLVKLRFFAGLTLNEAAIAAGISTSTAKRQWTFARAWLYDAMRPQAESTNA 297 DKGR+KRGG++++IDL++IE+A D P++ LL +D+ I L E P CA +V +RFFAGL+++EAA A GIS STAKR WT+ARAWL+D ++ S+++ Sbjct: 93 DKGRIKRGGEFQKIDLEKIEIALDAPNEDLLAIDEAIESLVEENPACAKVVMMRFFAGLSIDEAAAALGISASTAKRHWTYARAWLFDVLQADDSSSSS 191
BLAST of mRNA_M-pyrifera_M_contig105911.1263.1 vs. uniprot
Match: A0A8J7TWI8_9BACT (Sigma-70 family RNA polymerase sigma factor n=1 Tax=Zavarzinella sp. TaxID=1914240 RepID=A0A8J7TWI8_9BACT) HSP 1 Score: 114 bits (285), Expect = 5.400e-30 Identity = 56/91 (61.54%), Postives = 69/91 (75.82%), Query Frame = 1 Query: 1 DKGRLKRGGDYRRIDLDQIEVATDVPDDGLLDMDDCITRLTAEYPECATLVKLRFFAGLTLNEAAIAAGISTSTAKRQWTFARAWLYDAMR 273 DK RLKRGGD RR+DLDQ+E+A DV D L+ +DD +T L AE P+ A LV LRFFAGLTL +AA G+S+ TA+RQW +ARAWLY +R Sbjct: 93 DKNRLKRGGDRRRVDLDQVEIALDVDDGQLVALDDALTELAAEDPDAARLVNLRFFAGLTLRDAAALQGLSSRTAERQWAYARAWLYARLR 183
BLAST of mRNA_M-pyrifera_M_contig105911.1263.1 vs. uniprot
Match: A0A2D6SSL6_9PLAN (RNA polymerase subunit sigma n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A2D6SSL6_9PLAN) HSP 1 Score: 110 bits (276), Expect = 1.440e-28 Identity = 54/96 (56.25%), Postives = 71/96 (73.96%), Query Frame = 1 Query: 1 DKGRLKRGGDYRRIDLDQIEVATDVPDDGLLDMDDCITRLTAEYPECATLVKLRFFAGLTLNEAAIAAGISTSTAKRQWTFARAWLYDAMRPQAES 288 DKGRLKRGG R+DLD++E+A D P LL +D+ + +L E ECA LVK+RFFAGL+++E+A A GIST TAKR +ARAWL++A+RP S Sbjct: 94 DKGRLKRGGHLERVDLDRVEIAIDTPSGDLLALDEALKQLAEENEECAALVKIRFFAGLSVDESATALGISTRTAKRHSAYARAWLFEALRPDDTS 189
BLAST of mRNA_M-pyrifera_M_contig105911.1263.1 vs. uniprot
Match: A0A838QMD9_9BACT (Sigma-70 family RNA polymerase sigma factor n=1 Tax=Pirellulales bacterium TaxID=2715253 RepID=A0A838QMD9_9BACT) HSP 1 Score: 103 bits (258), Expect = 7.420e-26 Identity = 55/99 (55.56%), Postives = 66/99 (66.67%), Query Frame = 1 Query: 1 DKGRLKRGGDYRRIDLDQIEVATDVPDDGLLDMDDCITRLTAEYPECATLVKLRFFAGLTLNEAAIAAGISTSTAKRQWTFARAWLYDAMRPQAESTNA 297 DK RLKRGG R+DLD IE+A D PD+ L+++DD I L +E A LVKLRFFAGLTL EAA + GI TA R W +ARAWLYD + S +A Sbjct: 94 DKNRLKRGGQRHRLDLDHIEIALDSPDEDLIELDDAIQALASEDEVGANLVKLRFFAGLTLGEAAESLGIPRRTADRHWAYARAWLYDQLSGGDASQDA 192
BLAST of mRNA_M-pyrifera_M_contig105911.1263.1 vs. uniprot
Match: A0A6P2CU56_9BACT (Uncharacterized protein n=2 Tax=Gemmata massiliana TaxID=1210884 RepID=A0A6P2CU56_9BACT) HSP 1 Score: 103 bits (256), Expect = 1.210e-25 Identity = 53/97 (54.64%), Postives = 67/97 (69.07%), Query Frame = 1 Query: 4 KGRLKRGGDYRRIDLDQIEVATDVPDDGLLDMDDCITRLTAEYPECATLVKLRFFAGLTLNEAAIAAGISTSTAKRQWTFARAWLYDAMRPQAESTN 294 KGR+KRGGD RR+DLD EV P D +L +D+ +TRLTAE PE A +V+L FFAGL++ AA G+S +TA RQWT+AR+WL AM E T Sbjct: 88 KGRVKRGGDQRRVDLDDFEVTVGPPADEILALDEALTRLTAEDPEAARVVQLHFFAGLSVERAAEVLGVSRATAYRQWTYARSWLRCAMGGGDEPTG 184
BLAST of mRNA_M-pyrifera_M_contig105911.1263.1 vs. uniprot
Match: A0A3E0PL85_9BACT (RNA polymerase subunit sigma n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3E0PL85_9BACT) HSP 1 Score: 103 bits (256), Expect = 1.280e-25 Identity = 49/92 (53.26%), Postives = 68/92 (73.91%), Query Frame = 1 Query: 4 KGRLKRGGDYRRIDLDQIEVATDVPDDGLLDMDDCITRLTAEYPECATLVKLRFFAGLTLNEAAIAAGISTSTAKRQWTFARAWLYDAMRPQ 279 + RLKRGG ++R+ LD+++VA + DD LL +D+ +T+L E+P+ A LVKLRFFAGLT +AA A GIS TA R W FARAWLY +++ + Sbjct: 94 RNRLKRGGGWQRVSLDELDVADNASDDDLLALDEALTQLAREHPQAAELVKLRFFAGLTTEDAARALGISLRTANRHWAFARAWLYRSLQAE 185
BLAST of mRNA_M-pyrifera_M_contig105911.1263.1 vs. uniprot
Match: UPI001474BB5D (ECF-type sigma factor n=1 Tax=Tautonia rosea TaxID=2728037 RepID=UPI001474BB5D) HSP 1 Score: 99.8 bits (247), Expect = 3.510e-24 Identity = 50/93 (53.76%), Postives = 63/93 (67.74%), Query Frame = 1 Query: 4 KGRLKRGGDYRRIDLDQIEVATDVPDDGLLDMDDCITRLTAEYPECATLVKLRFFAGLTLNEAAIAAGISTSTAKRQWTFARAWLYDAMRPQA 282 KGRLKRGG RR+DLD++++ + D LL +D+ + RL E PECA +VKLRFFAGL+ E A A GIS TA R W +ARAWL A+ A Sbjct: 94 KGRLKRGGGLRRVDLDRVDIEAETDDLDLLALDEALARLADEEPECARVVKLRFFAGLSQEEVAEALGISRRTADRYWAYARAWLLHALEADA 186
BLAST of mRNA_M-pyrifera_M_contig105911.1263.1 vs. uniprot
Match: A0A2D6SYG3_9PLAN (RNA polymerase subunit sigma n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A2D6SYG3_9PLAN) HSP 1 Score: 98.6 bits (244), Expect = 8.780e-24 Identity = 49/95 (51.58%), Postives = 66/95 (69.47%), Query Frame = 1 Query: 4 KGRLKRGGDYRRIDLDQIEVATDVPDDGLLDMDDCITRLTAEYPECATLVKLRFFAGLTLNEAAIAAGISTSTAKRQWTFARAWLYDAMRPQAES 288 K R++ GG ++R DLD+ E+ +P D LL +D+ + RL P+ A LVKLRFFAGLTL +AA A G+S +TA R WT+ARAWLYDA+ +S Sbjct: 94 KSRVRHGGAHQRSDLDEAEIVISMPTDRLLALDEALGRLAEVEPQKAELVKLRFFAGLTLEQAADAIGVSRATATRHWTYARAWLYDAVSQSQDS 188
BLAST of mRNA_M-pyrifera_M_contig105911.1263.1 vs. uniprot
Match: UPI00141FC79E (ECF-type sigma factor n=1 Tax=Rubinisphaera sp. JC658 TaxID=2713176 RepID=UPI00141FC79E) HSP 1 Score: 95.5 bits (236), Expect = 1.240e-22 Identity = 46/91 (50.55%), Postives = 63/91 (69.23%), Query Frame = 1 Query: 1 DKGRLKRGGDYRRIDLDQIEVATDVPDDGLLDMDDCITRLTAEYPECATLVKLRFFAGLTLNEAAIAAGISTSTAKRQWTFARAWLYDAMR 273 DK RLKRGGD RR+DL I +A + P D L+D+D+ I L+ + P A L+KLRFFAGL+L +A+ + G++ R W FARAWL+D +R Sbjct: 92 DKKRLKRGGDRRRVDLSTISLALETPPDVLIDLDEAIEALSLQDPTAAQLIKLRFFAGLSLKDASASLGLTRRQGDRLWAFARAWLFDRLR 182
BLAST of mRNA_M-pyrifera_M_contig105911.1263.1 vs. uniprot
Match: A0A5C6CDB8_9BACT (ECF sigma factor n=1 Tax=Novipirellula artificiosorum TaxID=2528016 RepID=A0A5C6CDB8_9BACT) HSP 1 Score: 95.5 bits (236), Expect = 1.270e-22 Identity = 52/88 (59.09%), Postives = 59/88 (67.05%), Query Frame = 1 Query: 1 DKGRLKRGGDYRRIDLDQIEVATDVPDDGLLDMDDCITRLTAEYPECATLVKLRFFAGLTLNEAAIAAGISTSTAKRQWTFARAWLYD 264 DKGRLKRGGD +RI+LD + VA LL D + +LT E CA LVKLRFFAGLT EAA A GI+ TA R W +ARAWLYD Sbjct: 93 DKGRLKRGGDRKRINLDAVTVAVTSDPADLLAFDQALEQLTDEDAVCAKLVKLRFFAGLTQGEAADALGIARRTADRYWAYARAWLYD 180 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig105911.1263.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig105911.1263.1 >prot_M-pyrifera_M_contig105911.1263.1 ID=prot_M-pyrifera_M_contig105911.1263.1|Name=mRNA_M-pyrifera_M_contig105911.1263.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=100bp DKGRLKRGGDYRRIDLDQIEVATDVPDDGLLDMDDCITRLTAEYPECATLback to top mRNA from alignment at M-pyrifera_M_contig105911:3..302+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig105911.1263.1 ID=mRNA_M-pyrifera_M_contig105911.1263.1|Name=mRNA_M-pyrifera_M_contig105911.1263.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=300bp|location=Sequence derived from alignment at M-pyrifera_M_contig105911:3..302+ (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig105911:3..302+ >mRNA_M-pyrifera_M_contig105911.1263.1 ID=mRNA_M-pyrifera_M_contig105911.1263.1|Name=mRNA_M-pyrifera_M_contig105911.1263.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=600bp|location=Sequence derived from alignment at M-pyrifera_M_contig105911:3..302+ (Macrocystis pyrifera P11B4 male)back to top |