mRNA_M-pyrifera_M_contig105908.1262.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig105908.1262.1
Unique NamemRNA_M-pyrifera_M_contig105908.1262.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig105908.1262.1 vs. uniprot
Match: A0A812M3C6_9DINO (Ift172 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812M3C6_9DINO)

HSP 1 Score: 292 bits (747), Expect = 5.830e-88
Identity = 146/209 (69.86%), Postives = 173/209 (82.78%), Query Frame = 1 
Query:    4 STLLPFCNYAQWVPRSDVVVAQSRSNLCVWYNIRAPDRVTQFELKGDVEEIERTDERTEVVVDEGVNTASYMLDEGLISFGTAVEDGDLSSAAGILESLELAPETEGMWRQLMDMAVANADLIIAERCAVAIGDAAKARFLRKTAKIADLASERLGGDGRDFWMVRARLAQLRGDFAAAEAVFLEAGKLDEAIFMNQTLHQFEEAIALA 630
            STLL  C+Y QWVP SDVVVAQSRS+LCVWYNI APD+VT +++KGDVE+IER D RTEVVVDEG+NTASY+LDEGLI+FGTA++D D   A  ILE LEL+ ETE MWR+L D  +    L+IA+RCA A+GD A+ARFL KTAKIA LA ++LG DGRDFWMVRARLAQLRGDF  AE VFL+AGK DEA+ M QT+H+F+EAIA+A
Sbjct:  113 STLLSHCSYVQWVPESDVVVAQSRSSLCVWYNIAAPDKVTSYDIKGDVEDIERADGRTEVVVDEGLNTASYLLDEGLIAFGTAIDDRDHDGAMDILEGLELSSETEAMWRRLGDATLEAGHLLIAQRCAAAVGDIARARFLHKTAKIARLAEQKLGTDGRDFWMVRARLAQLRGDFDEAEGVFLDAGKTDEAVMMYQTMHRFDEAIAVA 321
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BLAST of mRNA_M-pyrifera_M_contig105908.1262.1 vs. uniprot
Match: A0A5A8DM00_CAFRO (Hypothetical protein n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DM00_CAFRO)

HSP 1 Score: 292 bits (747), Expect = 1.020e-87
Identity = 146/209 (69.86%), Postives = 173/209 (82.78%), Query Frame = 1 
Query:    4 STLLPFCNYAQWVPRSDVVVAQSRSNLCVWYNIRAPDRVTQFELKGDVEEIERTDERTEVVVDEGVNTASYMLDEGLISFGTAVEDGDLSSAAGILESLELAPETEGMWRQLMDMAVANADLIIAERCAVAIGDAAKARFLRKTAKIADLASERLGGDGRDFWMVRARLAQLRGDFAAAEAVFLEAGKLDEAIFMNQTLHQFEEAIALA 630
            STLL  C+Y QWVP SDVVVAQSRS+LCVWYNI APD+VT +++KGDVE+IER D RTEVVVDEG+NTASY+LDEGLI+FGTA++D D   A  ILE LEL+ ETE MWR+L D  +    L+IA+RCA A+GD A+ARFL KTAKIA LA ++LG DGRDFWMVRARLAQLRGDF  AE VFL+AGK DEA+ M QT+H+F+EAIA+A
Sbjct:  540 STLLSHCSYVQWVPESDVVVAQSRSSLCVWYNIAAPDKVTSYDIKGDVEDIERADGRTEVVVDEGLNTASYLLDEGLIAFGTAIDDRDHDGAMDILEGLELSSETEAMWRRLGDATLEAGHLLIAQRCAAAVGDIARARFLHKTAKIARLAEQKLGTDGRDFWMVRARLAQLRGDFDEAEGVFLDAGKTDEAVMMYQTMHRFDEAIAVA 748
[Close]
BLAST of mRNA_M-pyrifera_M_contig105908.1262.1 vs. uniprot
Match: A0A6S7JVN3_PARCT (Intraflagellar transport 172 homolog, partial n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7JVN3_PARCT)

HSP 1 Score: 237 bits (605), Expect = 2.020e-75
Identity = 116/210 (55.24%), Postives = 157/210 (74.76%), Query Frame = 1 
Query:    1 RSTLLPFCNYAQWVPRSDVVVAQSRSNLCVWYNIRAPDRVTQFELKGDVEEIERTDERTEVVVDEGVNTASYMLDEGLISFGTAVEDGDLSSAAGILESLELAPETEGMWRQLMDMAVANADLIIAERCAVAIGDAAKARFLRKTAKIADLASERLGGDGRDFWMVRARLAQLRGDFAAAEAVFLEAGKLDEAIFMNQTLHQFEEAIALA 630
            R+T+L +C Y QWVP SDVVVAQ+R NLC+WYNI AP RVT F +KGD+ ++ER + +T+VVV+EGV T SY LDEGLI FGTA++DGD   A   LE+LE+ PETE MW+ L  +A+ +  L+IAERC  A+GD +KA++L+K  ++A+ A+  +GGDG   +MVRA+LA L  +F  AE + LE G +DEAI M Q LH+++EAIA+A
Sbjct:   61 RTTILNYCTYVQWVPMSDVVVAQNRGNLCIWYNIDAPQRVTMFPIKGDIVDLERNEGKTDVVVNEGVTTVSYTLDEGLIEFGTAIDDGDFDRAVSFLETLEMVPETEAMWKTLSKLALEDRQLMIAERCFAALGDISKAKYLKKVNELAEQAAVDMGGDGSHHFMVRAKLAILDKNFKTAENILLEQGHVDEAIEMYQELHKWDEAIAVA 270
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BLAST of mRNA_M-pyrifera_M_contig105908.1262.1 vs. uniprot
Match: A0A7D9JWF9_PARCT (Intraflagellar transport 172 homolog n=2 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9JWF9_PARCT)

HSP 1 Score: 237 bits (605), Expect = 2.660e-74
Identity = 116/210 (55.24%), Postives = 157/210 (74.76%), Query Frame = 1 
Query:    1 RSTLLPFCNYAQWVPRSDVVVAQSRSNLCVWYNIRAPDRVTQFELKGDVEEIERTDERTEVVVDEGVNTASYMLDEGLISFGTAVEDGDLSSAAGILESLELAPETEGMWRQLMDMAVANADLIIAERCAVAIGDAAKARFLRKTAKIADLASERLGGDGRDFWMVRARLAQLRGDFAAAEAVFLEAGKLDEAIFMNQTLHQFEEAIALA 630
            R+T+L +C Y QWVP SDVVVAQ+R NLC+WYNI AP RVT F +KGD+ ++ER + +T+VVV+EGV T SY LDEGLI FGTA++DGD   A   LE+LE+ PETE MW+ L  +A+ +  L+IAERC  A+GD +KA++L+K  ++A+ A+  +GGDG   +MVRA+LA L  +F  AE + LE G +DEAI M Q LH+++EAIA+A
Sbjct:   61 RTTILNYCTYVQWVPMSDVVVAQNRGNLCIWYNIDAPQRVTMFPIKGDIVDLERNEGKTDVVVNEGVTTVSYTLDEGLIEFGTAIDDGDFDRAVSFLETLEMVPETEAMWKTLSKLALEDRQLMIAERCFAALGDISKAKYLKKVNELAEQAAVDMGGDGSHHFMVRAKLAILDKNFKTAENILLEQGHVDEAIEMYQELHKWDEAIAVA 270
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BLAST of mRNA_M-pyrifera_M_contig105908.1262.1 vs. uniprot
Match: A0A8B9VBG5_9AVES (Intraflagellar transport 172 n=3 Tax=Aves TaxID=8782 RepID=A0A8B9VBG5_9AVES)

HSP 1 Score: 236 bits (602), Expect = 7.920e-73
Identity = 118/210 (56.19%), Postives = 154/210 (73.33%), Query Frame = 1 
Query:    1 RSTLLPFCNYAQWVPRSDVVVAQSRSNLCVWYNIRAPDRVTQFELKGDVEEIERTDERTEVVVDEGVNTASYMLDEGLISFGTAVEDGDLSSAAGILESLELAPETEGMWRQLMDMAVANADLIIAERCAVAIGDAAKARFLRKTAKIADLASERLGGDGRDFWMVRARLAQLRGDFAAAEAVFLEAGKLDEAIFMNQTLHQFEEAIALA 630
            ++T+L +C+Y QWVP SDVVVAQSR+NLC+WYNI AP+RVT F LKGD+ ++ER D +TEV+V EGVNT SY LDEGLI FGTA++DGD   A   LE+LE++ ETE MW+ L  +A+    L IAERC  A+G+ AKARFL +T  IAD A++  GGDG D ++VRARLA L  ++  AE +FLE    +EA+ M Q LH ++E I +A
Sbjct:   13 KTTILNYCSYVQWVPGSDVVVAQSRNNLCIWYNIDAPERVTMFPLKGDIVDLERNDGKTEVIVSEGVNTVSYTLDEGLIEFGTAIDDGDYHRATAFLETLEMSTETEAMWKTLSRLALEARQLHIAERCFAALGNMAKARFLHETNAIADQAAQEHGGDGTDHYLVRARLAMLDKNYKLAEMIFLEQNATEEAMDMYQELHMWDECIVVA 222
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BLAST of mRNA_M-pyrifera_M_contig105908.1262.1 vs. uniprot
Match: UPI000719BCD2 (intraflagellar transport protein 172 homolog n=1 Tax=Priapulus caudatus TaxID=37621 RepID=UPI000719BCD2)

HSP 1 Score: 244 bits (624), Expect = 3.460e-71
Identity = 123/210 (58.57%), Postives = 157/210 (74.76%), Query Frame = 1 
Query:    1 RSTLLPFCNYAQWVPRSDVVVAQSRSNLCVWYNIRAPDRVTQFELKGDVEEIERTDERTEVVVDEGVNTASYMLDEGLISFGTAVEDGDLSSAAGILESLELAPETEGMWRQLMDMAVANADLIIAERCAVAIGDAAKARFLRKTAKIADLASERLGGDGRDFWMVRARLAQLRGDFAAAEAVFLEAGKLDEAIFMNQTLHQFEEAIALA 630
            R+TLL +CNY QWVP SDVVV+Q+RSNLCVWYNI AP+RVT F LKGD+ ++ER   +TEV+V+EGV T SY LDEGLI FGTA++DGD + AA  LE+LEL+PETE MW+ L  +++    L IAERC  A+GD AKAR+LR+T K A+ AS + GGDG D++ VRARLA L      AEA++LE   +DEA+ M Q LH ++ AI +A
Sbjct:  519 RTTLLNYCNYVQWVPGSDVVVSQNRSNLCVWYNIDAPERVTMFPLKGDIIDLERASGKTEVIVNEGVTTVSYTLDEGLIEFGTAIDDGDFARAAAFLETLELSPETEAMWKTLARLSLEARQLYIAERCYAALGDVAKARYLRETNKYAEWASVQFGGDGSDYYKVRARLAVLDKHLKLAEAIYLEQNSVDEAVEMYQELHMWDRAIDVA 728
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BLAST of mRNA_M-pyrifera_M_contig105908.1262.1 vs. uniprot
Match: A0A8C4XYN8_9SAUR (Intraflagellar transport 172 n=1 Tax=Gopherus evgoodei TaxID=1825980 RepID=A0A8C4XYN8_9SAUR)

HSP 1 Score: 231 bits (590), Expect = 3.540e-71
Identity = 115/210 (54.76%), Postives = 155/210 (73.81%), Query Frame = 1 
Query:    1 RSTLLPFCNYAQWVPRSDVVVAQSRSNLCVWYNIRAPDRVTQFELKGDVEEIERTDERTEVVVDEGVNTASYMLDEGLISFGTAVEDGDLSSAAGILESLELAPETEGMWRQLMDMAVANADLIIAERCAVAIGDAAKARFLRKTAKIADLASERLGGDGRDFWMVRARLAQLRGDFAAAEAVFLEAGKLDEAIFMNQTLHQFEEAIALA 630
            ++T+L +C+Y QWVP SDVVVAQ+R++LC+WYN  AP+RVT F LKGD+  +ER++ +TEV+V EGVNT SY LDEGLI FGTA++DGD S AA  LE+LE++ ETE MW+ L  +A+    L IAERC  A+G  +KARFL +T +IAD  ++  GGDG D++ VRARLA L  ++  AE +FLE   ++EA+ M Q LH +EE I +A
Sbjct:   13 KTTILNYCSYVQWVPGSDVVVAQNRNSLCIWYNNDAPERVTMFPLKGDIVNLERSNGKTEVIVAEGVNTVSYTLDEGLIEFGTAIDDGDYSRAAAFLETLEMSTETEAMWKTLSRLALEAKQLHIAERCFSALGHVSKARFLHETNEIADQVAKEYGGDGTDYYQVRARLAMLEKNYKLAEMIFLEQNAVEEAMEMYQELHMWEECIVVA 222
[Close]
BLAST of mRNA_M-pyrifera_M_contig105908.1262.1 vs. uniprot
Match: A0A672S203_SINGR (Intraflagellar transport 172 n=2 Tax=Sinocyclocheilus TaxID=75365 RepID=A0A672S203_SINGR)

HSP 1 Score: 230 bits (587), Expect = 7.660e-71
Identity = 114/210 (54.29%), Postives = 151/210 (71.90%), Query Frame = 1 
Query:    1 RSTLLPFCNYAQWVPRSDVVVAQSRSNLCVWYNIRAPDRVTQFELKGDVEEIERTDERTEVVVDEGVNTASYMLDEGLISFGTAVEDGDLSSAAGILESLELAPETEGMWRQLMDMAVANADLIIAERCAVAIGDAAKARFLRKTAKIADLASERLGGDGRDFWMVRARLAQLRGDFAAAEAVFLEAGKLDEAIFMNQTLHQFEEAIALA 630
            ++T+L FC Y QWVP SDVVVAQ+R NLCVWY I +P+RVT F LKGD+ ++ER++ +TEV+V EGVN+ SY LDEGLI FGTA++DGD   A   LE+LE++ ETE MW+ L  +++    L IAERC  A+GD +KARFL +T KIAD  S+  GGDG D + V+ARLA L  +F  AE  ++E   +DE + M Q LH ++E IA+A
Sbjct:    2 KNTMLSFCTYVQWVPGSDVVVAQNRGNLCVWYTIDSPERVTMFSLKGDIVDLERSNGKTEVIVTEGVNSVSYTLDEGLIEFGTAIDDGDYYRATAFLETLEMSAETEAMWKTLSKLSLEAQQLHIAERCFAALGDVSKARFLNETNKIADAVSKEYGGDGTDHYQVKARLAMLDKNFKLAEMYYMEQNAVDEVMEMYQELHMWDECIAVA 211
[Close]
BLAST of mRNA_M-pyrifera_M_contig105908.1262.1 vs. uniprot
Match: A0A8C4CRI6_9TELE (Intraflagellar transport 172 n=1 Tax=Denticeps clupeoides TaxID=299321 RepID=A0A8C4CRI6_9TELE)

HSP 1 Score: 229 bits (583), Expect = 2.530e-70
Identity = 115/204 (56.37%), Postives = 150/204 (73.53%), Query Frame = 1 
Query:   19 FCNYAQWVPRSDVVVAQSRSNLCVWYNIRAPDRVTQFELKGDVEEIERTDERTEVVVDEGVNTASYMLDEGLISFGTAVEDGDLSSAAGILESLELAPETEGMWRQLMDMAVANADLIIAERCAVAIGDAAKARFLRKTAKIADLASERLGGDGRDFWMVRARLAQLRGDFAAAEAVFLEAGKLDEAIFMNQTLHQFEEAIALA 630
            FC+Y QWVP SDVVVAQ+RSNLCVWYNI +P+RVT F L+GD+ ++ER++ +TEV+V EGVNT SY LDEGLI FGT+++DGD   A   LE+LE++ ETE MWR L  +A+    L IAERC  A+GD +KARFL +T KIAD  ++  GGDG + + V+ARLA L  ++  AE  FLE   +DEA+ M Q LH ++E IA+A
Sbjct:    2 FCSYVQWVPGSDVVVAQNRSNLCVWYNIDSPERVTMFPLRGDIVDLERSNGKTEVIVAEGVNTVSYTLDEGLIEFGTSIDDGDYYRATVFLETLEMSAETEAMWRTLSKLALEAHQLHIAERCFAALGDVSKARFLNQTNKIADTVAKETGGDGTEHYQVKARLAMLDKNYKLAEMYFLEQNAIDEAMEMYQELHMWDECIAVA 205
[Close]
BLAST of mRNA_M-pyrifera_M_contig105908.1262.1 vs. uniprot
Match: A0A7S2W0W8_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W0W8_9STRA)

HSP 1 Score: 242 bits (617), Expect = 3.050e-70
Identity = 130/212 (61.32%), Postives = 157/212 (74.06%), Query Frame = 1 
Query:    1 RSTLLPFCNYAQWVPRSDVVVAQSRSNLCVWYNIRAPDRVTQFELKGDVEEIERTDERTEVVVDEGVNTASYMLDEGLISFGTAVEDGDLSSAAGILESLELAPETEGMWRQLMDMAVANADLIIAERCAVAIGDAAKARFLRKTAKIADLASERLGGDGRDF--WMVRARLAQLRGDFAAAEAVFLEAGKLDEAIFMNQTLHQFEEAIALA 630
            R TLL FC Y QWVP SDVVVAQ+RSNLCVWYNI APD+VT  ++KGDVEEIER D RTEV+VDEG++ ASY+LDE LI FGTA+ED   S A  ILE+LEL+PE EGMWRQL D A+A   L++AERCA A+GD ++ARFL       DL +E++  +  D   WMVR+RLA L  D   AE + L  G+ DEAI M +TLHQF+EAIA+A
Sbjct:  521 RHTLLNFCTYVQWVPDSDVVVAQNRSNLCVWYNIHAPDQVTVHQIKGDVEEIERVDGRTEVIVDEGISAASYLLDEALIQFGTALEDRRYSKAVEILETLELSPEAEGMWRQLSDHAMAQNQLVVAERCAAALGDVSRARFLH------DL-NEKMAEEDIDVNHWMVRSRLALLNKDLRQAEDILLAQGRADEAIDMYRTLHQFDEAIAVA 725
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig105908.1262.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A812M3C6_9DINO5.830e-8869.86Ift172 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=... [more]
A0A5A8DM00_CAFRO1.020e-8769.86Hypothetical protein n=2 Tax=Cafeteria roenbergens... [more]
A0A6S7JVN3_PARCT2.020e-7555.24Intraflagellar transport 172 homolog, partial n=1 ... [more]
A0A7D9JWF9_PARCT2.660e-7455.24Intraflagellar transport 172 homolog n=2 Tax=Param... [more]
A0A8B9VBG5_9AVES7.920e-7356.19Intraflagellar transport 172 n=3 Tax=Aves TaxID=87... [more]
UPI000719BCD23.460e-7158.57intraflagellar transport protein 172 homolog n=1 T... [more]
A0A8C4XYN8_9SAUR3.540e-7154.76Intraflagellar transport 172 n=1 Tax=Gopherus evgo... [more]
A0A672S203_SINGR7.660e-7154.29Intraflagellar transport 172 n=2 Tax=Sinocyclochei... [more]
A0A8C4CRI6_9TELE2.530e-7056.37Intraflagellar transport 172 n=1 Tax=Denticeps clu... [more]
A0A7S2W0W8_9STRA3.050e-7061.32Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig105908contigM-pyrifera_M_contig105908:3..632 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score243.8
Seed ortholog evalue7.1e-62
Seed eggNOG ortholog4792.ETI45514
Preferred nameIFT172
KEGG koko:K19676
Hectar predicted targeting categoryother localisation
GOsGO:0000122,GO:0000226,GO:0001501,GO:0001654,GO:0001655,GO:0001822,GO:0001838,GO:0001841,GO:0001843,GO:0001894,GO:0001895,GO:0001947,GO:0002009,GO:0002119,GO:0002164,GO:0003002,GO:0003007,GO:0003143,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005815,GO:0005856,GO:0005871,GO:0005875,GO:0005929,GO:0005930,GO:0006355,GO:0006357,GO:0006508,GO:0006807,GO:0006810,GO:0006928,GO:0006996,GO:0007010,GO:0007017,GO:0007018,GO:0007154,GO:0007165,GO:0007166,GO:0007219,GO:0007224,GO:0007275,GO:0007368,GO:0007389,GO:0007399,GO:0007417,GO:0007420,GO:0007423,GO:0007507,GO:0008134,GO:0008150,GO:0008152,GO:0008285,GO:0008544,GO:0008589,GO:0009653,GO:0009790,GO:0009791,GO:0009792,GO:0009798,GO:0009799,GO:0009855,GO:0009887,GO:0009888,GO:0009889,GO:0009890,GO:0009892,GO:0009953,GO:0009966,GO:0009967,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0010646,GO:0010647,GO:0010970,GO:0014020,GO:0015630,GO:0016043,GO:0016331,GO:0016485,GO:0019219,GO:0019222,GO:0019538,GO:0021510,GO:0021515,GO:0021517,GO:0021522,GO:0021915,GO:0021953,GO:0022008,GO:0022607,GO:0022611,GO:0023051,GO:0023052,GO:0023056,GO:0030030,GO:0030031,GO:0030154,GO:0030182,GO:0030705,GO:0030990,GO:0030992,GO:0031122,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031503,GO:0031514,GO:0031982,GO:0032006,GO:0032501,GO:0032502,GO:0032838,GO:0032991,GO:0035050,GO:0035148,GO:0035239,GO:0035295,GO:0035735,GO:0035869,GO:0036064,GO:0036126,GO:0040024,GO:0042073,GO:0042127,GO:0042592,GO:0042995,GO:0043009,GO:0043010,GO:0043053,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044085,GO:0044238,GO:0044422,GO:0044424,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044463,GO:0044464,GO:0044782,GO:0045494,GO:0045880,GO:0045892,GO:0045934,GO:0046907,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048562,GO:0048565,GO:0048568,GO:0048583,GO:0048584,GO:0048598,GO:0048646,GO:0048699,GO:0048729,GO:0048731,GO:0048736,GO:0048793,GO:0048856,GO:0048869,GO:0048871,GO:0050678,GO:0050680,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051172,GO:0051179,GO:0051234,GO:0051252,GO:0051253,GO:0051604,GO:0051641,GO:0051649,GO:0051716,GO:0055115,GO:0055123,GO:0060021,GO:0060041,GO:0060173,GO:0060249,GO:0060255,GO:0060271,GO:0060322,GO:0060348,GO:0060429,GO:0060562,GO:0060606,GO:0060972,GO:0061371,GO:0061525,GO:0065007,GO:0065008,GO:0070925,GO:0070986,GO:0071704,GO:0071840,GO:0072001,GO:0072175,GO:0072359,GO:0080090,GO:0097014,GO:0097223,GO:0097225,GO:0097228,GO:0097435,GO:0097542,GO:0097598,GO:0097708,GO:0097729,GO:0097730,GO:0099111,GO:0099568,GO:0120025,GO:0120031,GO:0120036,GO:0120038,GO:1901564,GO:1902531,GO:1902679,GO:1903506,GO:1903507,GO:1905515,GO:2000112,GO:2000113,GO:2001141
EggNOG free text desc.WD40 repeats
EggNOG OGs3Q83E@4776,KOG3616@1,KOG3616@2759
COG Functional cat.K
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Exons1
Model size630
Cds size630
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815568.0614467-CDS-M-pyrifera_M_contig105908:2..6321622815568.0614467-CDS-M-pyrifera_M_contig105908:2..632Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig105908 3..632 -
1692277467.5363967-CDS-M-pyrifera_M_contig105908:2..6321692277467.5363967-CDS-M-pyrifera_M_contig105908:2..632Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig105908 3..632 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig105908.1262.1prot_M-pyrifera_M_contig105908.1262.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig105908 3..632 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig105908.1262.1

>prot_M-pyrifera_M_contig105908.1262.1 ID=prot_M-pyrifera_M_contig105908.1262.1|Name=mRNA_M-pyrifera_M_contig105908.1262.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=210bp
RSTLLPFCNYAQWVPRSDVVVAQSRSNLCVWYNIRAPDRVTQFELKGDVE
EIERTDERTEVVVDEGVNTASYMLDEGLISFGTAVEDGDLSSAAGILESL
ELAPETEGMWRQLMDMAVANADLIIAERCAVAIGDAAKARFLRKTAKIAD
LASERLGGDGRDFWMVRARLAQLRGDFAAAEAVFLEAGKLDEAIFMNQTL
HQFEEAIALA
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mRNA from alignment at M-pyrifera_M_contig105908:3..632-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig105908.1262.1 ID=mRNA_M-pyrifera_M_contig105908.1262.1|Name=mRNA_M-pyrifera_M_contig105908.1262.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=630bp|location=Sequence derived from alignment at M-pyrifera_M_contig105908:3..632- (Macrocystis pyrifera P11B4 male)
CGCTCCACTCTGCTCCCGTTTTGCAACTATGCCCAATGGGTGCCTCGTTC
TGACGTTGTGGTGGCACAATCACGCTCCAACCTCTGCGTGTGGTACAACA
TCAGAGCACCCGATCGCGTCACGCAGTTTGAGCTCAAGGGCGACGTGGAG
GAGATTGAACGGACTGACGAACGCACCGAGGTGGTCGTGGACGAAGGCGT
GAATACGGCTTCGTACATGCTCGACGAGGGTCTCATTTCCTTTGGCACCG
CAGTCGAGGATGGCGACTTGTCCAGTGCAGCTGGAATCTTGGAATCGCTG
GAACTCGCTCCAGAAACGGAGGGCATGTGGCGACAGCTCATGGACATGGC
CGTGGCAAACGCAGACCTCATCATCGCGGAGCGGTGTGCTGTTGCCATTG
GCGACGCTGCCAAAGCGCGTTTTTTGCGGAAAACGGCAAAAATCGCTGAT
TTGGCCAGTGAGCGGCTTGGAGGAGATGGAAGGGACTTTTGGATGGTACG
GGCGAGGCTCGCACAGCTCCGAGGCGATTTTGCGGCAGCGGAAGCCGTGT
TCTTGGAGGCTGGCAAGTTGGACGAGGCCATTTTCATGAACCAGACGCTG
CACCAGTTTGAGGAAGCGATTGCGTTGGCC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig105908:3..632-

>mRNA_M-pyrifera_M_contig105908.1262.1 ID=mRNA_M-pyrifera_M_contig105908.1262.1|Name=mRNA_M-pyrifera_M_contig105908.1262.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1260bp|location=Sequence derived from alignment at M-pyrifera_M_contig105908:3..632- (Macrocystis pyrifera P11B4 male)
CGCTCCACTCTGCTCCCGTTTTGCAACTATGCCCAATGGGTGCCTCGTTC
TGACGTTGTGGTGGCACAATCACGCTCCAACCTCTGCGTGTGGTACAACA
TCAGAGCACCCGATCGCGTCACGCAGTTTGAGCTCAAGGGCGACGTGGAG
GAGATTGAACGGACTGACGAACGCACCGAGGTGGTCGTGGACGAAGGCGT
GAATACGGCTTCGTACATGCTCGACGAGGGTCTCATTTCCTTTGGCACCG
CAGTCGAGGATGGCGACTTGTCCAGTGCAGCTGGAATCTTGGAATCGCTG
GAACTCGCTCCAGAAACGGAGGGCATGTGGCGACAGCTCATGGACATGGC
CGTGGCAAACGCAGACCTCATCATCGCGGAGCGGTGTGCTGTTGCCATTG
GCGACGCTGCCAAAGCGCGTTTTTTGCGGAAAACGGCAAAAATCGCTGAT
TTGGCCAGTGAGCGGCTTGGAGGAGATGGAAGGGACTTTTGGATGGTACG
GGCGAGGCTCGCACAGCTCCGAGGCGATTTTGCGGCAGCGGAAGCCGTGT
TCTTGGAGGCTGGCAAGTTGGACGAGGCCATTTTCATGAACCAGACGCTG
CACCAGTTTGAGGAAGCGATTGCGTTGGCCCGCTCCACTCTGCTCCCGTT
TTGCAACTATGCCCAATGGGTGCCTCGTTCTGACGTTGTGGTGGCACAAT
CACGCTCCAACCTCTGCGTGTGGTACAACATCAGAGCACCCGATCGCGTC
ACGCAGTTTGAGCTCAAGGGCGACGTGGAGGAGATTGAACGGACTGACGA
ACGCACCGAGGTGGTCGTGGACGAAGGCGTGAATACGGCTTCGTACATGC
TCGACGAGGGTCTCATTTCCTTTGGCACCGCAGTCGAGGATGGCGACTTG
TCCAGTGCAGCTGGAATCTTGGAATCGCTGGAACTCGCTCCAGAAACGGA
GGGCATGTGGCGACAGCTCATGGACATGGCCGTGGCAAACGCAGACCTCA
TCATCGCGGAGCGGTGTGCTGTTGCCATTGGCGACGCTGCCAAAGCGCGT
TTTTTGCGGAAAACGGCAAAAATCGCTGATTTGGCCAGTGAGCGGCTTGG
AGGAGATGGAAGGGACTTTTGGATGGTACGGGCGAGGCTCGCACAGCTCC
GAGGCGATTTTGCGGCAGCGGAAGCCGTGTTCTTGGAGGCTGGCAAGTTG
GACGAGGCCATTTTCATGAACCAGACGCTGCACCAGTTTGAGGAAGCGAT
TGCGTTGGCC
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