mRNA_M-pyrifera_M_contig1059.1259.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig1059.1259.1
Unique NamemRNA_M-pyrifera_M_contig1059.1259.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig1059.1259.1 vs. uniprot
Match: D7G199_ECTSI (N-acetyltransferase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G199_ECTSI)

HSP 1 Score: 300 bits (769), Expect = 8.370e-97
Identity = 215/381 (56.43%), Postives = 247/381 (64.83%), Query Frame = 1 
Query:    1 MRTPLVAALS-HGACFGLAFSPPGSLQLGV-SRHTPRVYRRLSTQLLFSPEHGDHAGPIAVVTSKKG---GSGKTVAPTTAGGWGSWKKIVSQREEQDGVLQKFSSHGGSGVESGLLVRTAQKDDMFSISHLCVDTFRGPFQWFEFPLQLFQARNLYPFYTATLLADFSFFGQVNGRLGRVTRNEIRHSMVVVEDKLSGKVVGFLEIGMLPKPTSSEERSLA-ESVLAETTAVAVAXXXXXXXXXXXXGEHSPASDXXXXXXXXXXXXXTSRESAVG----------STAIK--KSPDVSYLANVVVDRSQRRRGIGRTMVNSALKIVRELWPEEDRLYVSGNDIALALYEGMGFELAALEDEMLARKRRRPSRVYLSKQL 1089
            M  PL+A L  +G   GLAF+PP  ++  V SR+T           LFSP+HGDH GPI    SK       GK V+   +GGWGSW+K+VSQR EQD VL +F+S GG    + L VRTA   DM SIS LC+D FRGPFQWFE P+QLFQ              +F+FFGQ+ GRLGRVTRNEI+HSMV+ +D  S +VVGFLEIGMLPKP+SSEE +LA ES+ A        XXXXXXXXXXXX        XXXXXXXXXXXXX                  +TAIK  K PDV+YLANVVVDR QRRRGIGRTMVNSA++I              GNDIALALY+GMGFELAALEDEM+AR RRRP RVYLSK L
Sbjct:    1 MHYPLIAVLCWYGLPVGLAFAPPPLVRARVGSRNTASAV----ACHLFSPDHGDHDGPIVRAPSKAAKAAAQGKEVSGKPSGGWGSWEKVVSQRVEQDEVLDRFTSAGGVPEAAKLAVRTANSGDMPSISRLCIDIFRGPFQWFELPIQLFQ--------------EFAFFGQIKGRLGRVTRNEIKHSMVIAQDTTSRRVVGFLEIGMLPKPSSSEESALAGESLTAARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTAIKREKQPDVAYLANVVVDRGQRRRGIGRTMVNSAIEI--------------GNDIALALYQGMGFELAALEDEMMARSRRRPPRVYLSKPL 349
[Close]
BLAST of mRNA_M-pyrifera_M_contig1059.1259.1 vs. uniprot
Match: A0A7S1U4C5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U4C5_9STRA)

HSP 1 Score: 53.1 bits (126), Expect = 2.770e-5
Identity = 39/116 (33.62%), Postives = 57/116 (49.14%), Query Frame = 1 
Query:  307 GGSGVESG----LLVRTAQKDDMFSISHLCVDTFRGPFQWFEFPLQLFQARNLYPFYTATLLADFSFFGQVNGRLGRVTRNEIR--HSMVVVEDKLSGKVVGFLEIGMLPKPTSSE 636
            G +G E+     L  R+A  DD+ +IS LC + F GPFQW+    Q+F+       + A L        Q      R    E R  H+++V E  +  +VVGF+E+G+LP P   E
Sbjct:   10 GAAGEEAPAAAELSFRSANSDDLGTISELCAEAFGGPFQWY----QIFKRTTSVTRFRAVLTRRLRATQQ------RPLPGEARLLHALIVAE--VGQEVVGFVEVGLLPSPERKE 113
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig1059.1259.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G199_ECTSI8.370e-9756.43N-acetyltransferase domain-containing protein n=2 ... [more]
A0A7S1U4C5_9STRA2.770e-533.62Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig1059contigM-pyrifera_M_contig1059:11522..13660 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorychloroplast
Ec32 ortholog descriptionSecreted acetyltransferase (GNAT) domain protein
Ec32 orthologEc-12_005280.1
Exons3
Model size1092
Cds size1092
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig1059.1259.1prot_M-pyrifera_M_contig1059.1259.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig1059 11522..13660 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815567.8162951-CDS-M-pyrifera_M_contig1059:11521..116441622815567.8162951-CDS-M-pyrifera_M_contig1059:11521..11644Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1059 11522..11644 -
1692277467.3918784-CDS-M-pyrifera_M_contig1059:11521..116441692277467.3918784-CDS-M-pyrifera_M_contig1059:11521..11644Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1059 11522..11644 -
1622815567.8320625-CDS-M-pyrifera_M_contig1059:12350..128361622815567.8320625-CDS-M-pyrifera_M_contig1059:12350..12836Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1059 12351..12836 -
1692277467.4023025-CDS-M-pyrifera_M_contig1059:12350..128361692277467.4023025-CDS-M-pyrifera_M_contig1059:12350..12836Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1059 12351..12836 -
1622815567.8480656-CDS-M-pyrifera_M_contig1059:13177..136601622815567.8480656-CDS-M-pyrifera_M_contig1059:13177..13660Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1059 13178..13660 -
1692277467.4130683-CDS-M-pyrifera_M_contig1059:13177..136601692277467.4130683-CDS-M-pyrifera_M_contig1059:13177..13660Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1059 13178..13660 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig1059.1259.1

>prot_M-pyrifera_M_contig1059.1259.1 ID=prot_M-pyrifera_M_contig1059.1259.1|Name=mRNA_M-pyrifera_M_contig1059.1259.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=364bp
MRTPLVAALSHGACFGLAFSPPGSLQLGVSRHTPRVYRRLSTQLLFSPEH
GDHAGPIAVVTSKKGGSGKTVAPTTAGGWGSWKKIVSQREEQDGVLQKFS
SHGGSGVESGLLVRTAQKDDMFSISHLCVDTFRGPFQWFEFPLQLFQARN
LYPFYTATLLADFSFFGQVNGRLGRVTRNEIRHSMVVVEDKLSGKVVGFL
EIGMLPKPTSSEERSLAESVLAETTAVAVAASAAAAATTAAAGEHSPASD
GEREDMSDENEVDTSRESAVGSTAIKKSPDVSYLANVVVDRSQRRRGIGR
TMVNSALKIVRELWPEEDRLYVSGNDIALALYEGMGFELAALEDEMLARK
RRRPSRVYLSKQL*
back to top

mRNA from alignment at M-pyrifera_M_contig1059:11522..13660-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig1059.1259.1 ID=mRNA_M-pyrifera_M_contig1059.1259.1|Name=mRNA_M-pyrifera_M_contig1059.1259.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=2139bp|location=Sequence derived from alignment at M-pyrifera_M_contig1059:11522..13660- (Macrocystis pyrifera P11B4 male)
ATGCGTACCCCATTGGTAGCCGCGCTATCGCACGGCGCATGTTTTGGGCT
AGCGTTTTCTCCTCCTGGATCGCTGCAGCTAGGCGTTAGCAGACACACAC
CCCGTGTATATCGCCGCCTCAGCACGCAGCTTCTTTTCAGCCCTGAGCAC
GGCGACCACGCTGGCCCGATCGCCGTAGTCACTTCAAAGAAGGGGGGCAG
CGGCAAGACGGTAGCCCCGACAACAGCCGGAGGCTGGGGATCTTGGAAGA
AGATCGTTTCTCAGCGCGAGGAGCAAGATGGCGTGCTTCAGAAGTTCAGC
AGTCATGGCGGATCAGGCGTTGAATCTGGGTTGCTCGTCCGGACGGCGCA
GAAGGACGACATGTTCAGCATCTCGCACCTGTGCGTCGACACCTTCAGAG
GGCCCTTCCAATGGTTCGAGTTTCCCCTTCAATTATTTCAGGCACGCAAT
CTGTATCCTTTTTACACGGCAACGTTACTTGCTGTTCCGTTTGTGTTTGT
CCCTCGTGCGTCGCCCTGATAGTGCCTTGGGCCGTATGGAAGGCTGTACT
TGCAACCCTCCTATTAATAGCTGCGTGTGTCACCACGTACGGCACTACCT
CGTGCGGCAACAGCAGCCCCGGTAGATCGCCACCCACGAGGTCGTTCTTG
CACCGGAAACTATCGACGCCACATTGTACGTAGCCGCATGCGCGCACTTG
CACTCAACAGTCAGTAGAGCTGCACAGCCGCACCAGGCGACGCGCCCCCT
TTTTCGCTAACGCTTGCGCTAATTGCGTGCTTCCAAACTGCCGAACGCGA
CGCTACGGACGGCGGCGAATGCAGGATTTCTCCTTTTTCGGTCAGGTCAA
CGGCCGCTTGGGGCGCGTCACGCGAAACGAGATCCGGCACAGCATGGTGG
TTGTCGAGGACAAGCTGTCGGGCAAGGTTGTGGGCTTTCTCGAGATCGGA
ATGCTTCCAAAGCCCACCTCCTCCGAAGAGAGGTCTCTAGCCGAGTCGGT
CTTAGCGGAGACAACCGCGGTGGCGGTGGCGGCGTCGGCAGCGGCGGCGG
CAACGACAGCAGCAGCAGGCGAACACTCGCCGGCATCAGACGGCGAGCGT
GAGGACATGAGCGACGAGAACGAGGTAGACACCAGCCGCGAATCGGCGGT
GGGTAGTACCGCCATCAAGAAGTCGCCGGACGTGTCCTACTTGGCCAACG
TCGTGGTCGACCGATCTCAGCGACGGAGAGGGATCGGCCGAACCATGGTC
AATTCGGCGCTCAAGATCGTGAGAGAATTGTGGCCGGAGGAGGACCGCCT
TTACGTATCGGTGGAGCAGGCAAGCAAGCAAATGGGGAGCGATCTTTCGC
CATTTTTTTCACCGTCGGGGCCTCCTGGTTTGGCTAGCGCCATCGCTGTC
CGTTTCTTGTGGCACCGTACTCGGCCGGCGTTAGGCCTGTCAGCACCCCT
AACAGCGCGAGTCTGGGCTTCTTGGTTCTGTTTTGCTGCCCACACGTGTA
ACGTTTGCATCGCGAGTTGTGCGCCGTCGGCCGATGTTTCAGACAACTGA
AAAGCGAATTCGCCGCAACTTCGGTGGGTGTTCTCATGGAGGGATGCCCC
AATGTTTTGCGTAAATATCAGTAATAGTTGAGATTCGTATATACAGCACC
CGTAGGTTTACTGCCACGATATGGATAGGTGTGCGTAGTGTCATACGATA
ACTTGTACCTATGCGTGGTACCAGGTATTATTTAATACTGCGGCTTCTAA
CTGTTTTGTAGCTTTCACCCTCAAGCGCTGCTCAGGCGAAAACGGCTTGC
TTCAGTTCGGCACGTAGCCCCCTGCAGCCCCGGCCGACCGGTCAACGCAA
CTGCCTTTCTCTTCAAGAAACGGGCGGTATTTGCTGTGTGTGGTTCGAAC
GTATTGTGCCAAAGTGTGACTTGTGAAGGGAGACACGGCGCATTACGAAG
GCCGAGAAATCTTACTGTGTATGTTCGTTGTTTTTCTTGCTCGCCCTGTC
TCGTGCTCGTCTCCAGGGAAACGACATCGCGCTTGCCTTGTACGAGGGAA
TGGGGTTCGAGCTGGCGGCTCTAGAGGACGAGATGCTGGCCAGAAAACGA
AGACGTCCATCTCGCGTCTACCTTTCCAAGCAACTATAA
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig1059:11522..13660-

>mRNA_M-pyrifera_M_contig1059.1259.1 ID=mRNA_M-pyrifera_M_contig1059.1259.1|Name=mRNA_M-pyrifera_M_contig1059.1259.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=2184bp|location=Sequence derived from alignment at M-pyrifera_M_contig1059:11522..13660- (Macrocystis pyrifera P11B4 male)
ATGCGTACCCCATTGGTAGCCGCGCTATCGCACGGCGCATGTTTTGGGCT
AGCGTTTTCTCCTCCTGGATCGCTGCAGCTAGGCGTTAGCAGACACACAC
CCCGTGTATATCGCCGCCTCAGCACGCAGCTTCTTTTCAGCCCTGAGCAC
GGCGACCACGCTGGCCCGATCGCCGTAGTCACTTCAAAGAAGGGGGGCAG
CGGCAAGACGGTAGCCCCGACAACAGCCGGAGGCTGGGGATCTTGGAAGA
AGATCGTTTCTCAGCGCGAGGAGCAAGATGGCGTGCTTCAGAAGTTCAGC
AGTCATGGCGGATCAGGCGTTGAATCTGGGTTGCTCGTCCGGACGGCGCA
GAAGGACGACATGTTCAGCATCTCGCACCTGTGCGTCGACACCTTCAGAG
GGCCCTTCCAATGGTTCGAGTTTCCCCTTCAATTATTTCAGGCACGCAAT
CTGTATCCTTTTTACACGGCAACGTTACTTGCTATGCGTACCCCATTGGT
AGCCGCGCTATCGCACGGCGCATGTTTTGGGCTAGCGTTTTCTCCTCCTG
GATCGCTGCAGCTAGGCGTTAGCAGACACACACCCCGTGTATATCGCCGC
CTCAGCACGCAGCTTCTTTTCAGCCCTGAGCACGGCGACCACGCTGGCCC
GATCGCCGTAGTCACTTCAAAGAAGGGGGGCAGCGGCAAGACGGTAGCCC
CGACAACAGCCGGAGGCTGGGGATCTTGGAAGAAGATCGTTTCTCAGCGC
GAGGAGCAAGATGGCGTGCTTCAGAAGTTCAGCAGTCATGGCGGATCAGG
CGTTGAATCTGGGTTGCTCGTCCGGACGGCGCAGAAGGACGACATGTTCA
GCATCTCGCACCTGTGCGTCGACACCTTCAGAGGGCCCTTCCAATGGTTC
GAGTTTCCCCTTCAATTATTTCAGGCACGCAATCTGTATCCTTTTTACAC
GGCAACGTTACTTGCTGATTTCTCCTTTTTCGGTCAGGTCAACGGCCGCT
TGGGGCGCGTCACGCGAAACGAGATCCGGCACAGCATGGTGGTTGTCGAG
GACAAGCTGTCGGGCAAGGTTGTGGGCTTTCTCGAGATCGGAATGCTTCC
AAAGCCCACCTCCTCCGAAGAGAGGTCTCTAGCCGAGTCGGTCTTAGCGG
AGACAACCGCGGTGGCGGTGGCGGCGTCGGCAGCGGCGGCGGCAACGACA
GCAGCAGCAGGCGAACACTCGCCGGCATCAGACGGCGAGCGTGAGGACAT
GAGCGACGAGAACGAGGTAGACACCAGCCGCGAATCGGCGGTGGGTAGTA
CCGCCATCAAGAAGTCGCCGGACGTGTCCTACTTGGCCAACGTCGTGGTC
GACCGATCTCAGCGACGGAGAGGGATCGGCCGAACCATGGTCAATTCGGC
GCTCAAGATCGTGAGAGAATTGTGGCCGGAGGAGGACCGCCTTTACGTAT
CGGATTTCTCCTTTTTCGGTCAGGTCAACGGCCGCTTGGGGCGCGTCACG
CGAAACGAGATCCGGCACAGCATGGTGGTTGTCGAGGACAAGCTGTCGGG
CAAGGTTGTGGGCTTTCTCGAGATCGGAATGCTTCCAAAGCCCACCTCCT
CCGAAGAGAGGTCTCTAGCCGAGTCGGTCTTAGCGGAGACAACCGCGGTG
GCGGTGGCGGCGTCGGCAGCGGCGGCGGCAACGACAGCAGCAGCAGGCGA
ACACTCGCCGGCATCAGACGGCGAGCGTGAGGACATGAGCGACGAGAACG
AGGTAGACACCAGCCGCGAATCGGCGGTGGGTAGTACCGCCATCAAGAAG
TCGCCGGACGTGTCCTACTTGGCCAACGTCGTGGTCGACCGATCTCAGCG
ACGGAGAGGGATCGGCCGAACCATGGTCAATTCGGCGCTCAAGATCGTGA
GAGAATTGTGGCCGGAGGAGGACCGCCTTTACGTATCGGGAAACGACATC
GCGCTTGCCTTGTACGAGGGAATGGGGTTCGAGCTGGCGGCTCTAGAGGA
CGAGATGCTGGCCAGAAAACGAAGACGTCCATCTCGCGTCTACCTTTCCA
AGCAACTATAAGGAAACGACATCGCGCTTGCCTTGTACGAGGGAATGGGG
TTCGAGCTGGCGGCTCTAGAGGACGAGATGCTGGCCAGAAAACGAAGACG
TCCATCTCGCGTCTACCTTTCCAAGCAACTATAA
back to top