mRNA_M-pyrifera_M_contig105899.1257.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig105899.1257.1
Unique NamemRNA_M-pyrifera_M_contig105899.1257.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig105899.1257.1 vs. uniprot
Match: A0A8J2KVN9_9HEXA (Hypothetical protein n=1 Tax=Allacma fusca TaxID=39272 RepID=A0A8J2KVN9_9HEXA)

HSP 1 Score: 134 bits (336), Expect = 1.630e-36
Identity = 64/118 (54.24%), Postives = 85/118 (72.03%), Query Frame = 1
Query:    1 ALRSAMKDSRFDPVSLEELADLSCGVSLLTDFEDGKDAMDWTVGIHGIIIDFHH-RDIPMSATFLPQVASEQGWDKTQTLQALARKAGYRGALSSEFLAGVKLTRYQSSKTKCTFDEY 351
            A+ SA KDSRF P+S EE   L   VS+L  FEDG D +DWTVG+HGI I+FH+ R    +AT+LP+VA EQGW++TQT+ +L RK G++G ++ E  AG+KLTRYQS K   T+ +Y
Sbjct:  134 AITSAFKDSRFPPISREEFQKLQVSVSILRHFEDGADYLDWTVGVHGIRIEFHNERGSKRTATYLPEVAPEQGWNQTQTIDSLLRKGGFKGHVTPEVRAGIKLTRYQSEKVTVTYQDY 251          
BLAST of mRNA_M-pyrifera_M_contig105899.1257.1 vs. uniprot
Match: A0A7S2WE28_9STRA (Hypothetical protein n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WE28_9STRA)

HSP 1 Score: 132 bits (333), Expect = 1.740e-36
Identity = 65/116 (56.03%), Postives = 81/116 (69.83%), Query Frame = 1
Query:    7 RSAMKDSRFDPVSLEELADLSCGVSLLTDFEDGKDAMDWTVGIHGIIIDFHHRD-IPMSATFLPQVASEQGWDKTQTLQALARKAGYRGALSSEFLAGVKLTRYQSSKTKCTFDEY 351
            RSA +D RF+P+S  EL+ L C VSLL  +ED +DA DW +G HGI+I+FH       SATFLP+VA EQGWD  QTLQ+L RKAGY   L+   LAG+  TRYQSSK   T++E+
Sbjct:   79 RSAFQDRRFEPISARELSSLQCAVSLLVKYEDCRDAFDWEIGTHGILIEFHDASGRRYSATFLPEVAKEQGWDHRQTLQSLVRKAGYERKLTDAQLAGISTTRYQSSKMAMTYEEF 194          
BLAST of mRNA_M-pyrifera_M_contig105899.1257.1 vs. uniprot
Match: A0A151ZHA1_9MYCE (DUF51 family protein n=1 Tax=Tieghemostelium lacteum TaxID=361077 RepID=A0A151ZHA1_9MYCE)

HSP 1 Score: 132 bits (331), Expect = 1.820e-36
Identity = 63/117 (53.85%), Postives = 80/117 (68.38%), Query Frame = 1
Query:    1 ALRSAMKDSRFDPVSLEELADLSCGVSLLTDFEDGKDAMDWTVGIHGIIIDFHHRDIPMSATFLPQVASEQGWDKTQTLQALARKAGYRGALSSEFLAGVKLTRYQSSKTKCTFDEY 351
            +L SA+KD RF P+S +EL  L C VSLL DFED KD  DW +G HGI I+F  +    ++T+LP+VA EQGW + + L +L +KAGY G +   FLA VKLTRYQSSK   T+ EY
Sbjct:   76 SLTSALKDDRFSPISAKELPSLHCAVSLLVDFEDAKDVWDWEIGTHGIWIEFSDQGYTRNSTYLPEVAEEQGWTQEKALYSLIKKAGYYGKVDDNFLAKVKLTRYQSSKLTLTYKEY 192          
BLAST of mRNA_M-pyrifera_M_contig105899.1257.1 vs. uniprot
Match: A0A8J4PMX3_9MYCE (AMMECR1 domain-containing protein n=1 Tax=Polysphondylium violaceum TaxID=133409 RepID=A0A8J4PMX3_9MYCE)

HSP 1 Score: 131 bits (330), Expect = 2.510e-36
Identity = 62/117 (52.99%), Postives = 82/117 (70.09%), Query Frame = 1
Query:    1 ALRSAMKDSRFDPVSLEELADLSCGVSLLTDFEDGKDAMDWTVGIHGIIIDFHHRDIPMSATFLPQVASEQGWDKTQTLQALARKAGYRGALSSEFLAGVKLTRYQSSKTKCTFDEY 351
            AL SA+KDSRF P+S +EL  L C VSLL +FED +D  DW +G HGI I+F+      +AT+LP+V  EQGW K +T+++L RKAGY+G + S   + +KLTRYQSSK   +F EY
Sbjct:   79 ALTSALKDSRFKPISSKELPKLHCSVSLLVEFEDAQDCWDWDIGTHGIWIEFNDSHTTRNATYLPEVMPEQGWTKEETMKSLVRKAGYQGKVDSSLYSKIKLTRYQSSKYSLSFQEY 195          
BLAST of mRNA_M-pyrifera_M_contig105899.1257.1 vs. uniprot
Match: A0A197JDL0_9FUNG (AMMECR1 domain-containing protein n=1 Tax=Linnemannia elongata AG-77 TaxID=1314771 RepID=A0A197JDL0_9FUNG)

HSP 1 Score: 130 bits (328), Expect = 3.910e-36
Identity = 66/118 (55.93%), Postives = 82/118 (69.49%), Query Frame = 1
Query:    1 ALRSAMKDSRFDPVSLEELADLSCGVSLLTDFEDGKDAMDWTVGIHGIIIDFHH-RDIPMSATFLPQVASEQGWDKTQTLQALARKAGYRGALSSEFLAGVKLTRYQSSKTKCTFDEY 351
            AL SA KD RF P+  +EL+ L CGVSLL DFEDG D +DW VG HGI I+F   R    +AT+LP+VA EQGW K + +++L RK GYR A+S EFL  V LTRYQS K + T+ +Y
Sbjct:   71 ALTSAFKDGRFPPIDRKELSSLVCGVSLLVDFEDGDDYLDWEVGRHGIWIEFKDARGRKKTATYLPEVAKEQGWTKEKAIESLLRKGGYREAISQEFLDSVILTRYQSRKVQVTYQDY 188          
BLAST of mRNA_M-pyrifera_M_contig105899.1257.1 vs. uniprot
Match: A0A7M7KVS4_VARDE (AMMECR1 domain-containing protein n=1 Tax=Varroa destructor TaxID=109461 RepID=A0A7M7KVS4_VARDE)

HSP 1 Score: 131 bits (329), Expect = 5.790e-36
Identity = 62/122 (50.82%), Postives = 88/122 (72.13%), Query Frame = 1
Query:    1 ALRSAMKDSRFDPVSLEELADLSCGVSLLTDFEDGKDAMDWTVGIHGIIIDF-----HHRDIPMSATFLPQVASEQGWDKTQTLQALARKAGYRGALSSEFLAGVKLTRYQSSKTKCTFDEY 351
            AL SA+KDSRF+P++ +EL+ L+C VSLLT+FEDG D +DW +G+HGI I+F     HHR    SAT+LP++A EQ WD+ QT+ +L RK G+RG ++++    +KL RYQS K   ++ EY
Sbjct:   92 ALTSALKDSRFEPITRDELSRLTCAVSLLTNFEDGHDYLDWEIGVHGIRIEFETEKGHHR----SATYLPEIAKEQNWDRLQTVDSLLRKGGFRGNITADVRRSIKLVRYQSEKVYASWQEY 209          
BLAST of mRNA_M-pyrifera_M_contig105899.1257.1 vs. uniprot
Match: A0A8H7VTL7_9FUNG (AMMECR1 domain-containing protein n=1 Tax=Mucor circinatus TaxID=2054153 RepID=A0A8H7VTL7_9FUNG)

HSP 1 Score: 130 bits (327), Expect = 7.120e-36
Identity = 60/118 (50.85%), Postives = 87/118 (73.73%), Query Frame = 1
Query:    1 ALRSAMKDSRFDPVSLEELADLSCGVSLLTDFEDGKDAMDWTVGIHGIIIDF-HHRDIPMSATFLPQVASEQGWDKTQTLQALARKAGYRGALSSEFLAGVKLTRYQSSKTKCTFDEY 351
            AL SA++D RF+P++L E+  L+C VSLL +FE+GKD MDW +G+HGI I+F +      +AT+LP+V  EQGW K + +++L RK GYRG+++ + L  +KLTRYQSSK + T+ EY
Sbjct:   75 ALTSALQDRRFNPITLREVPRLTCSVSLLINFEEGKDYMDWVIGVHGIWIEFINDHGHKKTATYLPEVIPEQGWTKEEAIESLLRKGGYRGSINDKVLKSIKLTRYQSSKAQATYKEY 192          
BLAST of mRNA_M-pyrifera_M_contig105899.1257.1 vs. uniprot
Match: A0A2R5GTC3_9STRA (AMME syndrome candidate 1 protein-like n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GTC3_9STRA)

HSP 1 Score: 130 bits (326), Expect = 1.250e-35
Identity = 66/119 (55.46%), Postives = 84/119 (70.59%), Query Frame = 1
Query:    1 ALRSAMKDSRFDPVSLEELADLSCGVSLLTDFEDGKDAMDWTVGIHGIIIDFHH--RDIPMSATFLPQVASEQGWDKTQTLQALARKAGYRGALSSEFLAGVKLTRYQSSKTKCTFDEY 351
            AL +A++DSRF PVSL E+  LS GVSLL +FE+G+DA DW +G HGI I F +        ATFLP+VA EQGW   +TL AL RKAGYRG+LS   +A +KL RYQSSK + +++ Y
Sbjct:   85 ALVAALEDSRFQPVSLSEVPGLSVGVSLLVNFENGRDARDWEIGKHGIRISFSNPSNGRTCGATFLPEVAKEQGWTVDETLTALVRKAGYRGSLSESLIASIKLVRYQSSKARLSYEAY 203          
BLAST of mRNA_M-pyrifera_M_contig105899.1257.1 vs. uniprot
Match: UPI001CF97C34 (AMMECR1-like protein n=1 Tax=Protopterus annectens TaxID=7888 RepID=UPI001CF97C34)

HSP 1 Score: 128 bits (322), Expect = 2.750e-35
Identity = 61/117 (52.14%), Postives = 85/117 (72.65%), Query Frame = 1
Query:    4 LRSAMKDSRFDPVSLEELADLSCGVSLLTDFEDGKDAMDWTVGIHGIIIDFHH-RDIPMSATFLPQVASEQGWDKTQTLQALARKAGYRGALSSEFLAGVKLTRYQSSKTKCTFDEY 351
            L SA+KDSRF P++ EEL  LSC VSLLT+FED  D +DW VG+HGI I+F++ + +  +AT+LP+VA EQ WD+ QT+ +L RK G++  ++SEF   +KLTRY S K   ++ EY
Sbjct:   48 LTSALKDSRFPPLTREELPKLSCSVSLLTNFEDASDYLDWEVGVHGIRIEFYNEKGVKRTATYLPEVAKEQDWDRIQTIDSLLRKGGFKAPITSEFRKTIKLTRYCSEKVTVSYAEY 164          
BLAST of mRNA_M-pyrifera_M_contig105899.1257.1 vs. uniprot
Match: A0A4X2K3R8_VOMUR (AMMECR1 domain-containing protein n=6 Tax=Euteleostomi TaxID=117571 RepID=A0A4X2K3R8_VOMUR)

HSP 1 Score: 127 bits (318), Expect = 4.060e-35
Identity = 61/117 (52.14%), Postives = 84/117 (71.79%), Query Frame = 1
Query:    4 LRSAMKDSRFDPVSLEELADLSCGVSLLTDFEDGKDAMDWTVGIHGIIIDF-HHRDIPMSATFLPQVASEQGWDKTQTLQALARKAGYRGALSSEFLAGVKLTRYQSSKTKCTFDEY 351
            L SA+KDSRF P++ EEL  L+C VSLLT+FED  D +DW VG+HGI I+F + +    +AT+LP+VA EQGWD  QT+ +L RK GY+  ++S+F   +KLTRY+S K   ++ EY
Sbjct:   12 LTSALKDSRFPPMTREELPRLTCSVSLLTNFEDVCDYLDWEVGVHGIRIEFINEKGSKRTATYLPEVAKEQGWDHIQTIDSLLRKGGYKATITSDFRKSIKLTRYRSEKMTMSYSEY 128          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig105899.1257.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8J2KVN9_9HEXA1.630e-3654.24Hypothetical protein n=1 Tax=Allacma fusca TaxID=3... [more]
A0A7S2WE28_9STRA1.740e-3656.03Hypothetical protein n=2 Tax=Rhizochromulina marin... [more]
A0A151ZHA1_9MYCE1.820e-3653.85DUF51 family protein n=1 Tax=Tieghemostelium lacte... [more]
A0A8J4PMX3_9MYCE2.510e-3652.99AMMECR1 domain-containing protein n=1 Tax=Polyspho... [more]
A0A197JDL0_9FUNG3.910e-3655.93AMMECR1 domain-containing protein n=1 Tax=Linneman... [more]
A0A7M7KVS4_VARDE5.790e-3650.82AMMECR1 domain-containing protein n=1 Tax=Varroa d... [more]
A0A8H7VTL7_9FUNG7.120e-3650.85AMMECR1 domain-containing protein n=1 Tax=Mucor ci... [more]
A0A2R5GTC3_9STRA1.250e-3555.46AMME syndrome candidate 1 protein-like n=1 Tax=Hon... [more]
UPI001CF97C342.750e-3552.14AMMECR1-like protein n=1 Tax=Protopterus annectens... [more]
A0A4X2K3R8_VOMUR4.060e-3552.14AMMECR1 domain-containing protein n=6 Tax=Euteleos... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig105899contigM-pyrifera_M_contig105899:171..603 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMammalia
Seed ortholog score126.7
Seed ortholog evalue6.7e-27
Seed eggNOG ortholog132908.ENSPVAP00000003780
Preferred nameAMMECR1L
Hectar predicted targeting categoryother localisation
EggNOG free text desc.AMMECR1-like
EggNOG OGs38FC2@33154,3BIQB@33208,3CTBP@33213,3J2HJ@40674,4857D@7711,48XGK@7742,4KT77@9397,COG2078@1,KOG3274@2759
COG Functional cat.S
Best tax levelChiroptera
Best eggNOG OGNA|NA|NA
Exons2
Model size351
Cds size336
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig105899.1257.1prot_M-pyrifera_M_contig105899.1257.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig105899 171..588 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815567.6631625-CDS-M-pyrifera_M_contig105899:170..3071622815567.6631625-CDS-M-pyrifera_M_contig105899:170..307Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig105899 171..307 -
1692277467.2924848-CDS-M-pyrifera_M_contig105899:170..3071692277467.2924848-CDS-M-pyrifera_M_contig105899:170..307Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig105899 171..307 -
1622815567.6783864-CDS-M-pyrifera_M_contig105899:389..5881622815567.6783864-CDS-M-pyrifera_M_contig105899:389..588Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig105899 390..588 -
1692277467.3043053-CDS-M-pyrifera_M_contig105899:389..5881692277467.3043053-CDS-M-pyrifera_M_contig105899:389..588Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig105899 390..588 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815567.6920793-UTR-M-pyrifera_M_contig105899:588..6031622815567.6920793-UTR-M-pyrifera_M_contig105899:588..603Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig105899 589..603 -
1692277467.3122807-UTR-M-pyrifera_M_contig105899:588..6031692277467.3122807-UTR-M-pyrifera_M_contig105899:588..603Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig105899 589..603 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig105899.1257.1

>prot_M-pyrifera_M_contig105899.1257.1 ID=prot_M-pyrifera_M_contig105899.1257.1|Name=mRNA_M-pyrifera_M_contig105899.1257.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=112bp
MKDSRFDPVSLEELADLSCGVSLLTDFEDGKDAMDWTVGIHGIIIDFHHR
DIPMSATFLPQVASEQGWDKTQTLQALARKAGYRGALSSEFLAGVKLTRY
QSSKTKCTFDEY
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mRNA from alignment at M-pyrifera_M_contig105899:171..603-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig105899.1257.1 ID=mRNA_M-pyrifera_M_contig105899.1257.1|Name=mRNA_M-pyrifera_M_contig105899.1257.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=433bp|location=Sequence derived from alignment at M-pyrifera_M_contig105899:171..603- (Macrocystis pyrifera P11B4 male)
GCGCTGAGAAGTGCCATGAAGGATTCCCGGTTTGATCCCGTGTCGCTGGA GGAGCTGGCTGACCTGTCGTGCGGTGTGTCTCTGCTGACGGACTTTGAAG ACGGCAAGGACGCGATGGACTGGACAGTGGGCATCCACGGCATTATCATT GACTTCCACCACCGCGACATACCCATGTCTGCCACCTTCCTGCCACAAGT AGCATCAGAGCAGGGTGAGCAGCACCTCACTGAGCACAAGTCCGCCGAGC TTGTCCGCACCTCACCACATCTCTCTTTCGCTGTGCTTCGTGGCAGGGTG GGACAAGACGCAGACGCTGCAGGCTCTGGCGCGCAAAGCAGGATACCGTG GTGCTCTCTCCAGTGAGTTCCTCGCCGGCGTGAAGCTGACCAGGTATCAG TCCTCCAAGACGAAGTGCACGTTCGATGAGTAT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig105899:171..603-

>mRNA_M-pyrifera_M_contig105899.1257.1 ID=mRNA_M-pyrifera_M_contig105899.1257.1|Name=mRNA_M-pyrifera_M_contig105899.1257.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=672bp|location=Sequence derived from alignment at M-pyrifera_M_contig105899:171..603- (Macrocystis pyrifera P11B4 male)
ATGAAGGATTCCCGGTTTGATCCCGTGTCGCTGGAGGAGCTGGCTGACCT
GTCGTGCGGTGTGTCTCTGCTGACGGACTTTGAAGACGGCAAGGACGCGA
TGGACTGGACAGTGGGCATCCACGGCATTATCATTGACTTCCACCACCGC
GACATACCCATGTCTGCCACCTTCCTGCCACAAGTAGCATCAGAGCAGGA
TGAAGGATTCCCGGTTTGATCCCGTGTCGCTGGAGGAGCTGGCTGACCTG
TCGTGCGGTGTGTCTCTGCTGACGGACTTTGAAGACGGCAAGGACGCGAT
GGACTGGACAGTGGGCATCCACGGCATTATCATTGACTTCCACCACCGCG
ACATACCCATGTCTGCCACCTTCCTGCCACAAGTAGCATCAGAGCAGGGG
TGGGACAAGACGCAGACGCTGCAGGCTCTGGCGCGCAAAGCAGGATACCG
TGGTGCTCTCTCCAGTGAGTTCCTCGCCGGCGTGAAGCTGACCAGGTATC
AGTCCTCCAAGACGAAGTGCACGTTCGATGAGTATGGTGGGACAAGACGC
AGACGCTGCAGGCTCTGGCGCGCAAAGCAGGATACCGTGGTGCTCTCTCC
AGTGAGTTCCTCGCCGGCGTGAAGCTGACCAGGTATCAGTCCTCCAAGAC
GAAGTGCACGTTCGATGAGTAT
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