mRNA_M-pyrifera_M_contig105898.1256.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig105898.1256.1
Unique NamemRNA_M-pyrifera_M_contig105898.1256.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig105898.1256.1 vs. uniprot
Match: A0A665TCX6_ECHNA (ArfGAP with GTPase domain, ankyrin repeat and PH domain 1 n=1 Tax=Echeneis naucrates TaxID=173247 RepID=A0A665TCX6_ECHNA)

HSP 1 Score: 112 bits (280), Expect = 1.820e-28
Identity = 52/93 (55.91%), Postives = 65/93 (69.89%), Query Frame = 1 
Query:    7 EPTWASINLGILICIECSGIHRQVGTHISKVRSTTLDSWEKEMLRLMQGVGNRLSNSVFLETLPGVITPPSPKCDRGTREAWIRDKYERRLYV 285
             P WAS+NLG LICIECSGIHR +GTH+S+VRS  LD W  E++R+M  +GN L+NSV+     G + P  P   R  RE WIR KYE+RL+V
Sbjct:   22 NPDWASLNLGALICIECSGIHRNLGTHLSRVRSLDLDEWPLELIRVMSAIGNELANSVWEANAQGRLKP-GPDASREERERWIRAKYEQRLFV 113
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BLAST of mRNA_M-pyrifera_M_contig105898.1256.1 vs. uniprot
Match: A0A8C7WTB5_9TELE (Arf-GAP domain-containing protein n=1 Tax=Oryzias sinensis TaxID=183150 RepID=A0A8C7WTB5_9TELE)

HSP 1 Score: 112 bits (279), Expect = 2.880e-28
Identity = 51/94 (54.26%), Postives = 68/94 (72.34%), Query Frame = 1 
Query:    4 AEPTWASINLGILICIECSGIHRQVGTHISKVRSTTLDSWEKEMLRLMQGVGNRLSNSVFLETLPGVITPPSPKCDRGTREAWIRDKYERRLYV 285
            A+PTWAS+NLG LICIECSGIHR +GTH+S+VRS  LD W  E+ +++  +GN ++NSV+     G I P +P   R  RE+WIR KYE+R +V
Sbjct:   15 ADPTWASLNLGALICIECSGIHRNLGTHLSRVRSLDLDDWPGELTQVLAAIGNHMANSVWESCTQGRIKP-TPNATREERESWIRAKYEQRAFV 107
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BLAST of mRNA_M-pyrifera_M_contig105898.1256.1 vs. uniprot
Match: UPI001F4F2983 (arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 2 isoform X1 n=3 Tax=Schistocerca TaxID=7008 RepID=UPI001F4F2983)

HSP 1 Score: 116 bits (291), Expect = 4.390e-28
Identity = 54/103 (52.43%), Postives = 72/103 (69.90%), Query Frame = 1 
Query:    1 RAEPTWASINLGILICIECSGIHRQVGTHISKVRSTTLDSWEKEMLRLMQGVGNRLSNSVFLETLPGVITPPSPKCDRGTREAWIRDKYERRLYVRRSARVPE 309
             +EP WASINLGI +CIECSG+HR +G H SKVRS TLD+WE E+L++M  +GN + NSV+    P  +   +PKC    REAWI+ KY  R +V++ + VPE
Sbjct:  451 NSEPRWASINLGITLCIECSGVHRSLGVHFSKVRSLTLDAWEPEILKVMAELGNTIVNSVYEANTPTDVIRATPKCQDNIREAWIKRKYVERQFVKQLS-VPE 552
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BLAST of mRNA_M-pyrifera_M_contig105898.1256.1 vs. uniprot
Match: A0A0D2WIY8_CAPO3 (Stromal membrane-associated GTPase-activating protein 2 n=1 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2WIY8_CAPO3)

HSP 1 Score: 115 bits (289), Expect = 8.450e-28
Identity = 52/95 (54.74%), Postives = 67/95 (70.53%), Query Frame = 1 
Query:    4 AEPTWASINLGILICIECSGIHRQVGTHISKVRSTTLDSWEKEMLRLMQGVGNRLSNSVFLETLPGVITPPSPKCDRGTREAWIRDKYERRLYVR 288
            A P WASINLGI++CIECSGIHR +G HISKVRS TLD W  EM+ +MQ  GN  +N+++   LP  +  P+P   R  RE +IR KYER+ ++R
Sbjct:  906 ANPDWASINLGIVVCIECSGIHRSLGVHISKVRSVTLDDWSSEMIAVMQESGNATANAIWEVDLPPTVRKPTPDTPRAPREEFIRAKYERKQFIR 1000
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BLAST of mRNA_M-pyrifera_M_contig105898.1256.1 vs. uniprot
Match: A0A665TTA4_ECHNA (ArfGAP with GTPase domain, ankyrin repeat and PH domain 1 n=1 Tax=Echeneis naucrates TaxID=173247 RepID=A0A665TTA4_ECHNA)

HSP 1 Score: 112 bits (280), Expect = 1.130e-27
Identity = 52/93 (55.91%), Postives = 65/93 (69.89%), Query Frame = 1 
Query:    7 EPTWASINLGILICIECSGIHRQVGTHISKVRSTTLDSWEKEMLRLMQGVGNRLSNSVFLETLPGVITPPSPKCDRGTREAWIRDKYERRLYV 285
             P WAS+NLG LICIECSGIHR +GTH+S+VRS  LD W  E++R+M  +GN L+NSV+     G + P  P   R  RE WIR KYE+RL+V
Sbjct:  108 NPDWASLNLGALICIECSGIHRNLGTHLSRVRSLDLDEWPLELIRVMSAIGNELANSVWEANAQGRLKP-GPDASREERERWIRAKYEQRLFV 199
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BLAST of mRNA_M-pyrifera_M_contig105898.1256.1 vs. uniprot
Match: A0A7R9FDJ1_9NEOP (Hypothetical protein n=1 Tax=Timema bartmani TaxID=61472 RepID=A0A7R9FDJ1_9NEOP)

HSP 1 Score: 110 bits (276), Expect = 1.660e-27
Identity = 49/94 (52.13%), Postives = 64/94 (68.09%), Query Frame = 1 
Query:    7 EPTWASINLGILICIECSGIHRQVGTHISKVRSTTLDSWEKEMLRLMQGVGNRLSNSVFLETLPGVITPPSPKCDRGTREAWIRDKYERRLYVR 288
             P WASINLGI +CIECSG+HR +G H SKVRS TLD+WE E+L++M  +GN + N V+   +P      +PKC    REAWI+ KY  R +V+
Sbjct:   21 NPRWASINLGITLCIECSGVHRSLGVHYSKVRSLTLDAWEPEILKVMAELGNSIVNKVYEANIPPDFARATPKCHGNIREAWIKAKYVERKFVK 114
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BLAST of mRNA_M-pyrifera_M_contig105898.1256.1 vs. uniprot
Match: A0A8C1CY61_CYPCA (ArfGAP with GTPase domain, ankyrin repeat and PH domain 1 n=1 Tax=Cyprinus carpio TaxID=7962 RepID=A0A8C1CY61_CYPCA)

HSP 1 Score: 109 bits (273), Expect = 1.890e-27
Identity = 49/93 (52.69%), Postives = 67/93 (72.04%), Query Frame = 1 
Query:    7 EPTWASINLGILICIECSGIHRQVGTHISKVRSTTLDSWEKEMLRLMQGVGNRLSNSVFLETLPGVITPPSPKCDRGTREAWIRDKYERRLYV 285
            +P WAS+NLG LICIECSGIHR +GTH+S+VRS  LD W  E++++M  +GN L+NSV+     G + P +P   R  RE WIR KYE++L++
Sbjct:   20 DPDWASLNLGALICIECSGIHRNLGTHLSRVRSLDLDEWPLELIKVMSAIGNELANSVWEANAQGRLKP-APDATREERERWIRAKYEQKLFL 111
[Close]
BLAST of mRNA_M-pyrifera_M_contig105898.1256.1 vs. uniprot
Match: UPI0009076E77 (arf-GAP with GTPase, ANK repeat and PH domain-containing protein 2-like n=1 Tax=Alligator mississippiensis TaxID=8496 RepID=UPI0009076E77)

HSP 1 Score: 109 bits (273), Expect = 1.890e-27
Identity = 54/104 (51.92%), Postives = 69/104 (66.35%), Query Frame = 1 
Query:   10 PTWASINLGILICIECSGIHRQVGTHISKVRSTTLDSWEKEMLRLMQGVGNRLSNSVFLETLPGVITPPSPKCDRGTREAWIRDKYERRLYVRRSARVPEEVRP 321
            PTWAS+NLG LICIECSGIHR +GTH+S+VRS  LD W  E+  ++  +GN  +N ++ E  P     P+P   R  REAWIR KYE+RL+V   A +PE   P
Sbjct:    1 PTWASLNLGALICIECSGIHRNLGTHVSRVRSLDLDDWPSELTLVLTTIGNATANGIW-EARPQGRRKPTPDASREEREAWIRAKYEQRLFV---APLPEPTAP 100
[Close]
BLAST of mRNA_M-pyrifera_M_contig105898.1256.1 vs. uniprot
Match: A0A668AT19_9TELE (ArfGAP with GTPase domain, ankyrin repeat and PH domain 1 n=1 Tax=Myripristis murdjan TaxID=586833 RepID=A0A668AT19_9TELE)

HSP 1 Score: 114 bits (285), Expect = 2.830e-27
Identity = 52/95 (54.74%), Postives = 68/95 (71.58%), Query Frame = 1 
Query:    1 RAEPTWASINLGILICIECSGIHRQVGTHISKVRSTTLDSWEKEMLRLMQGVGNRLSNSVFLETLPGVITPPSPKCDRGTREAWIRDKYERRLYV 285
            R +P WAS+NLG LICIECSGIHR +GTH+S+VRS  LD W  E++++M  +GN L+NSV+     G + P +P   R  RE WIR KYE+RL+V
Sbjct:  634 RPDPDWASLNLGALICIECSGIHRNLGTHLSRVRSLDLDEWPLELIKVMSAIGNELANSVWEANAQGRLKP-APDASREERERWIRAKYEQRLFV 727
[Close]
BLAST of mRNA_M-pyrifera_M_contig105898.1256.1 vs. uniprot
Match: UPI0015A70A18 (arf-GAP with GTPase, ANK repeat and PH domain-containing protein 2-like n=1 Tax=Oxyura jamaicensis TaxID=8884 RepID=UPI0015A70A18)

HSP 1 Score: 109 bits (272), Expect = 3.050e-27
Identity = 49/93 (52.69%), Postives = 68/93 (73.12%), Query Frame = 1 
Query:    7 EPTWASINLGILICIECSGIHRQVGTHISKVRSTTLDSWEKEMLRLMQGVGNRLSNSVFLETLPGVITPPSPKCDRGTREAWIRDKYERRLYV 285
            +PTWAS+NLG LICIECSGIHR +GTH+S+VRS  LD W +E+  ++  +GN  +NS++ E  P     P+P+  R  RE+WIR KYE+RL++
Sbjct:   22 DPTWASLNLGALICIECSGIHRNLGTHLSRVRSLDLDDWPRELTLVLASIGNATANSIW-EKNPQGRCKPTPESSREERESWIRAKYEQRLFL 113
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig105898.1256.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A665TCX6_ECHNA1.820e-2855.91ArfGAP with GTPase domain, ankyrin repeat and PH d... [more]
A0A8C7WTB5_9TELE2.880e-2854.26Arf-GAP domain-containing protein n=1 Tax=Oryzias ... [more]
UPI001F4F29834.390e-2852.43arf-GAP with coiled-coil, ANK repeat and PH domain... [more]
A0A0D2WIY8_CAPO38.450e-2854.74Stromal membrane-associated GTPase-activating prot... [more]
A0A665TTA4_ECHNA1.130e-2755.91ArfGAP with GTPase domain, ankyrin repeat and PH d... [more]
A0A7R9FDJ1_9NEOP1.660e-2752.13Hypothetical protein n=1 Tax=Timema bartmani TaxID... [more]
A0A8C1CY61_CYPCA1.890e-2752.69ArfGAP with GTPase domain, ankyrin repeat and PH d... [more]
UPI0009076E771.890e-2751.92arf-GAP with GTPase, ANK repeat and PH domain-cont... [more]
A0A668AT19_9TELE2.830e-2754.74ArfGAP with GTPase domain, ankyrin repeat and PH d... [more]
UPI0015A70A183.050e-2752.69arf-GAP with GTPase, ANK repeat and PH domain-cont... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig105898contigM-pyrifera_M_contig105898:302..628 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeOpisthokonta
Seed ortholog score116.7
Seed ortholog evalue6.8e-24
Seed eggNOG ortholog192875.XP_004365526.1
Preferred nameARAP1
KEGG koko:K12490,ko:K18439,ko:K18440
KEGG Pathwayko04015,ko04024,ko04144,map04015,map04024,map04144
Hectar predicted targeting categoryother localisation
GOsGO:0000139,GO:0001067,GO:0001664,GO:0001726,GO:0001919,GO:0001921,GO:0003674,GO:0003676,GO:0003677,GO:0003700,GO:0005096,GO:0005102,GO:0005488,GO:0005515,GO:0005543,GO:0005547,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005794,GO:0005795,GO:0005802,GO:0005829,GO:0005886,GO:0006355,GO:0006810,GO:0006996,GO:0007010,GO:0007015,GO:0007049,GO:0007154,GO:0007165,GO:0007166,GO:0007167,GO:0007178,GO:0007179,GO:0008047,GO:0008134,GO:0008150,GO:0008289,GO:0008360,GO:0009719,GO:0009889,GO:0009891,GO:0009893,GO:0009966,GO:0009967,GO:0009968,GO:0009987,GO:0010033,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0010639,GO:0010646,GO:0010647,GO:0010648,GO:0012505,GO:0016020,GO:0016043,GO:0016192,GO:0019219,GO:0019222,GO:0022402,GO:0022603,GO:0022604,GO:0023051,GO:0023052,GO:0023056,GO:0023057,GO:0030027,GO:0030029,GO:0030036,GO:0030037,GO:0030234,GO:0030334,GO:0030336,GO:0030695,GO:0031090,GO:0031252,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031344,GO:0031346,GO:0031410,GO:0031532,GO:0031701,GO:0031702,GO:0031974,GO:0031981,GO:0031982,GO:0031984,GO:0031985,GO:0032231,GO:0032232,GO:0032580,GO:0032879,GO:0032956,GO:0032970,GO:0033043,GO:0035020,GO:0035021,GO:0035023,GO:0035024,GO:0035091,GO:0040012,GO:0040013,GO:0042058,GO:0042221,GO:0042995,GO:0043085,GO:0043087,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043325,GO:0043547,GO:0044087,GO:0044089,GO:0044093,GO:0044212,GO:0044422,GO:0044424,GO:0044428,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0045742,GO:0045893,GO:0045935,GO:0046332,GO:0046578,GO:0046580,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048585,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050896,GO:0051056,GO:0051058,GO:0051128,GO:0051129,GO:0051130,GO:0051171,GO:0051173,GO:0051179,GO:0051234,GO:0051252,GO:0051254,GO:0051270,GO:0051271,GO:0051336,GO:0051345,GO:0051489,GO:0051491,GO:0051492,GO:0051493,GO:0051494,GO:0051497,GO:0051716,GO:0060255,GO:0060395,GO:0060491,GO:0060589,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070412,GO:0070848,GO:0070887,GO:0071310,GO:0071363,GO:0071495,GO:0071559,GO:0071560,GO:0071840,GO:0071944,GO:0080090,GO:0090527,GO:0097159,GO:0097435,GO:0097708,GO:0098588,GO:0098772,GO:0098791,GO:0110020,GO:0110053,GO:0120025,GO:0120032,GO:0120034,GO:0120035,GO:0140110,GO:1901184,GO:1901186,GO:1901363,GO:1901981,GO:1902531,GO:1902532,GO:1902680,GO:1902903,GO:1902904,GO:1902936,GO:1903506,GO:1903508,GO:2000112,GO:2000145,GO:2000146,GO:2001141
EggNOG free text desc.phosphatidylinositol-3,4,5-trisphosphate binding
EggNOG OGs38F8M@33154,COG5347@1,KOG1117@2759
COG Functional cat.T
Best tax levelOpisthokonta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131
Exons1
Model size327
Cds size327
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815567.6302896-CDS-M-pyrifera_M_contig105898:301..6281622815567.6302896-CDS-M-pyrifera_M_contig105898:301..628Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig105898 302..628 -
1692277467.281053-CDS-M-pyrifera_M_contig105898:301..6281692277467.281053-CDS-M-pyrifera_M_contig105898:301..628Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig105898 302..628 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig105898.1256.1prot_M-pyrifera_M_contig105898.1256.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig105898 302..628 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig105898.1256.1

>prot_M-pyrifera_M_contig105898.1256.1 ID=prot_M-pyrifera_M_contig105898.1256.1|Name=mRNA_M-pyrifera_M_contig105898.1256.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=109bp
RAEPTWASINLGILICIECSGIHRQVGTHISKVRSTTLDSWEKEMLRLMQ
GVGNRLSNSVFLETLPGVITPPSPKCDRGTREAWIRDKYERRLYVRRSAR
VPEEVRPRR
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mRNA from alignment at M-pyrifera_M_contig105898:302..628-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig105898.1256.1 ID=mRNA_M-pyrifera_M_contig105898.1256.1|Name=mRNA_M-pyrifera_M_contig105898.1256.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=327bp|location=Sequence derived from alignment at M-pyrifera_M_contig105898:302..628- (Macrocystis pyrifera P11B4 male)
AGAGCAGAGCCGACGTGGGCGAGCATCAACCTGGGCATCTTGATCTGCAT
CGAGTGCTCGGGCATTCACCGGCAGGTGGGCACCCATATCTCAAAGGTGC
GGTCGACGACCCTCGACTCGTGGGAGAAGGAGATGCTGCGCCTCATGCAG
GGCGTGGGTAACCGCCTCTCCAACTCTGTTTTTCTTGAGACCCTCCCTGG
AGTCATTACCCCGCCCTCGCCCAAGTGCGACCGTGGCACGCGCGAGGCGT
GGATCCGCGACAAGTACGAGCGCCGTCTCTACGTCCGCCGCTCCGCACGT
GTGCCCGAGGAGGTGCGGCCCCGTCGC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig105898:302..628-

>mRNA_M-pyrifera_M_contig105898.1256.1 ID=mRNA_M-pyrifera_M_contig105898.1256.1|Name=mRNA_M-pyrifera_M_contig105898.1256.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=654bp|location=Sequence derived from alignment at M-pyrifera_M_contig105898:302..628- (Macrocystis pyrifera P11B4 male)
AGAGCAGAGCCGACGTGGGCGAGCATCAACCTGGGCATCTTGATCTGCAT
CGAGTGCTCGGGCATTCACCGGCAGGTGGGCACCCATATCTCAAAGGTGC
GGTCGACGACCCTCGACTCGTGGGAGAAGGAGATGCTGCGCCTCATGCAG
GGCGTGGGTAACCGCCTCTCCAACTCTGTTTTTCTTGAGACCCTCCCTGG
AGTCATTACCCCGCCCTCGCCCAAGTGCGACCGTGGCACGCGCGAGGCGT
GGATCCGCGACAAGTACGAGCGCCGTCTCTACGTCCGCCGCTCCGCACGT
GTGCCCGAGGAGGTGCGGCCCCGTCGCAGAGCAGAGCCGACGTGGGCGAG
CATCAACCTGGGCATCTTGATCTGCATCGAGTGCTCGGGCATTCACCGGC
AGGTGGGCACCCATATCTCAAAGGTGCGGTCGACGACCCTCGACTCGTGG
GAGAAGGAGATGCTGCGCCTCATGCAGGGCGTGGGTAACCGCCTCTCCAA
CTCTGTTTTTCTTGAGACCCTCCCTGGAGTCATTACCCCGCCCTCGCCCA
AGTGCGACCGTGGCACGCGCGAGGCGTGGATCCGCGACAAGTACGAGCGC
CGTCTCTACGTCCGCCGCTCCGCACGTGTGCCCGAGGAGGTGCGGCCCCG
TCGC
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