mRNA_M-pyrifera_M_contig10584.1250.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig10584.1250.1
Unique NamemRNA_M-pyrifera_M_contig10584.1250.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig10584.1250.1 vs. uniprot
Match: A0A6H5K5Y6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5Y6_9PHAE)

HSP 1 Score: 95.9 bits (237), Expect = 6.310e-22
Identity = 49/77 (63.64%), Postives = 57/77 (74.03%), Query Frame = 1 
Query:  118 MLSEVPGEGKFIRMDSTEDAQRFGPRCILGSGLSADEILAARSILEEEDSDREGVTPLVLLTPEIADERVGDVLTNA 348
            M    PG GKF++M  TEDAQ FGPRCIL SGLS +E  A RSIL++ED DRE  TP V  T EIA++RVGDVLT+A
Sbjct:   80 MSGPPPGRGKFVKMGGTEDAQSFGPRCILASGLSLEERGAIRSILDDEDQDREDRTPFVAHTLEIAEKRVGDVLTDA 156
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BLAST of mRNA_M-pyrifera_M_contig10584.1250.1 vs. uniprot
Match: D8LIT4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIT4_ECTSI)

HSP 1 Score: 79.7 bits (195), Expect = 1.580e-16
Identity = 42/64 (65.62%), Postives = 49/64 (76.56%), Query Frame = 1 
Query:  157 MDSTEDAQRFGPRCILGSGLSADEILAARSILEEEDSDREGVTPLVLLTPEIADERVGDVLTNA 348
            M  TEDAQ FGPRCIL SGLS +E  A RSIL+++D DRE  TPLV    EIA++RVGDVLT+A
Sbjct:    1 MGGTEDAQSFGPRCILASGLSLEERRAIRSILDDKDQDREDRTPLVAHNLEIAEKRVGDVLTDA 64
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig10584.1250.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K5Y6_9PHAE6.310e-2263.64Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LIT4_ECTSI1.580e-1665.63Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig10584contigM-pyrifera_M_contig10584:4529..6844 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionUncharacterised conserved protein UCP014543
Ec32 orthologEc-20_001430.1
Exons2
Model size354
Cds size354
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815567.356754-CDS-M-pyrifera_M_contig10584:4528..46881622815567.356754-CDS-M-pyrifera_M_contig10584:4528..4688Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10584 4529..4688 -
1692277467.1616468-CDS-M-pyrifera_M_contig10584:4528..46881692277467.1616468-CDS-M-pyrifera_M_contig10584:4528..4688Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10584 4529..4688 -
1622815567.3681297-CDS-M-pyrifera_M_contig10584:6650..68441622815567.3681297-CDS-M-pyrifera_M_contig10584:6650..6844Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10584 6651..6844 -
1692277467.175196-CDS-M-pyrifera_M_contig10584:6650..68441692277467.175196-CDS-M-pyrifera_M_contig10584:6650..6844Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10584 6651..6844 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig10584.1250.1prot_M-pyrifera_M_contig10584.1250.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig10584 4529..6844 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig10584.1250.1

>prot_M-pyrifera_M_contig10584.1250.1 ID=prot_M-pyrifera_M_contig10584.1250.1|Name=mRNA_M-pyrifera_M_contig10584.1250.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=118bp
VDASSLLSWPSLRATTSRSATTRNSRESCTRWTSGGCCSMLSEVPGEGKF
IRMDSTEDAQRFGPRCILGSGLSADEILAARSILEEEDSDREGVTPLVLL
TPEIADERVGDVLTNAAA
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mRNA from alignment at M-pyrifera_M_contig10584:4529..6844-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig10584.1250.1 ID=mRNA_M-pyrifera_M_contig10584.1250.1|Name=mRNA_M-pyrifera_M_contig10584.1250.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=2316bp|location=Sequence derived from alignment at M-pyrifera_M_contig10584:4529..6844- (Macrocystis pyrifera P11B4 male)
GTTGATGCTTCCTCGCTGCTGAGCTGGCCTTCCTTACGAGCAACTACAAG
CAGGAGTGCAACAACACGCAACAGCCGCGAGTCTTGTACGAGATGGACAT
CAGGCGGCTGCTGCTCTATGCTGTCCGAGGTGCCTGGGGAGGGAAAGTTC
ATTCGAATGGACAGCACCGAGGATGCGCAGAGATTTGGACCGAGGTAGGT
GGATGGATGAGTCGGAGACGGACATGTATGTATGGTACACAGCAGTACAG
ATTTCCTAACAGCACCCGCCACCAGCAGTTGCAGCAGCTGCACATCGGCA
GCGGCAGCAGCAACAGCAGGTGTGACAGCTGGGTGGGCGGGTAGGTGAAG
TGGGTGGGTGGTTGGGCCTGGGATACGTATGATACCGCATGCACAAATTA
CCTAGCAGCAGGAGAGCAGCAGCAGTATCATCTAGGCAAGTACCTCGTAC
TGCCGTATAGCCTCTGTAGGTACCAGGGGTGCGGTACGTACGTGTGACGG
TCGATAAATTATTTTTTATCGTCATGCCCTTTGGTCCCTTTTTAAATACG
GGGGTCCATAGTTAATAGGACCTATGGTGTACATAAAAACCTATATATTT
ACCTATTTTTACTAACAATATTTGGTCCTATTTACTATGGTCCCCCGTAC
ATAGGACTGCAGTCCCGTTCTGGGGACGAACTACTTGAAAATTGAATGGT
GGGTCCCCTCAAGGGGACTGCAGTCCTAAAAGTTACATGCTACCTGGTAT
CTGGTAACTGCTACCGGTATCATCTACCGGTTCCTGTTGTGAATATCAGG
TACATACAAAAGCGTGAGTGAGCTACTTCGATGAAAATCGACGAGCAGTG
GGAATGCTGAACCCTATGCGCGAAAAAAAAATGAAGGCATGTACTGGGGG
GGAGACGGGACGACACCTGTGACCACGGCTTGTCCAGAAGAAGACCCCTG
AGGGTGAAGCCTCCTACGAGTTAAGCTGGACATTGAAAGTGACGAATAAA
AAAATATACAGCGGTATTTGCATCAGATTTCAGCAGCAGCAGCAGCAGCA
GAATACAGTACAACAGAAGGCGCGGCGGCTTCGACAACAGCGGCAGATGT
CAAGTCCTCGTTGTGCGCGCCGCTATCTGGTTGTACGTAAAATAGTGTGA
GCCTGCTGCTGCTGCTGCTGCTGCTGATGCTGCCGTCGGCCAAGGGGGGA
TGCTACTGCTGAATACATAGCTGGATAGCGTCGACGGAATTCGAGGAACC
TCCACCGACGCAGCAAAGAAGCAGATATCGTCACCTATGAATACTTTTTC
CCTACTCGTACCGAGGGGTCGCAACCCCTAGATAGTGACTCTTTACGGAG
GTTTCGTGCTTGGCGCCTAAAGCCGACCCTCCGGCCCGAACCCGAACCCT
GAGCCAGTGATCAGTGCTAGGATGCTGTGGTCTCGCATGACTTTAGATCG
ATTCGGCCGGCTTCGACGCTGTAGTTGACAAGACTCTAGGTTGATTTGGC
CTGCTCAGGATGCCGCGGCTTGGAAAGGCTGCATTAATAGGTTTGATCGG
ACCGCTTGTAGTTACTTTATACTGTACCCGTTAGCCCACCAGAGTGCGCA
AATGGCTACCTCAGGAATATTGACTACTGTATCAGCGGGTGACCACGACT
GCCACTACTGCCGGTACTATGTGATGGTGACGACGTTTCGGATATTTTCA
AAAGCTATTTCAGTTTCAGTCTAGTGTGCCCCCCGAGACACCGGCTCCCT
CGAACGACACCCGCCCCCCCCGCGGCCGCGCGACCGCGCCGCGCCCGCCC
CGCACTGCAGACCTCGGTGTCCCCGGCGAAAGAAAGTGTGCTAACACCAC
ACTCGGCGAGCGGGGAGCGTAGAAAGCTCGGCTCCCGCGATCAGGGAGGA
TCCCCGGAAAGGGGGGGGTTTCCATAGTTATCTGAGGCATATTTCTCCGG
GAGGGCGTCGTATCCCCTGTTTTGGGTTTTCATTTTTTATGATATGTAAG
ATACATTGTCGGAGGGGAAAATGTACAAAATACCTGGTGATATTTATCAC
CAATAAATGAATTGTCTGGTATTGTATAACACGCATTTATGTGACTACGG
CCGTGTAGGGCATCGGTTTGTTCGTCCAATCCGAAATCCGCTCGTTGCTG
GCCCAGGTGTATTCTTGGTAGCGGTCTCTCCGCAGATGAAATCCTCGCCG
CGCGCTCGATTCTCGAAGAGGAGGACAGCGATCGAGAAGGCGTTACCCCC
CTCGTCCTGCTTACCCCGGAGATTGCGGATGAACGGGTGGGAGACGTCTT
GACTAACGCCGCAGCC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig10584:4529..6844-

>mRNA_M-pyrifera_M_contig10584.1250.1 ID=mRNA_M-pyrifera_M_contig10584.1250.1|Name=mRNA_M-pyrifera_M_contig10584.1250.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=708bp|location=Sequence derived from alignment at M-pyrifera_M_contig10584:4529..6844- (Macrocystis pyrifera P11B4 male)
GTTGATGCTTCCTCGCTGCTGAGCTGGCCTTCCTTACGAGCAACTACAAG
CAGGAGTGCAACAACACGCAACAGCCGCGAGTCTTGTACGAGATGGACAT
CAGGCGGCTGCTGCTCTATGCTGTCCGAGGTGCCTGGGGAGGGAAAGTTC
ATTCGAATGGACAGCACCGAGGATGCGCAGAGATTTGGACCGAGGTTGAT
GCTTCCTCGCTGCTGAGCTGGCCTTCCTTACGAGCAACTACAAGCAGGAG
TGCAACAACACGCAACAGCCGCGAGTCTTGTACGAGATGGACATCAGGCG
GCTGCTGCTCTATGCTGTCCGAGGTGCCTGGGGAGGGAAAGTTCATTCGA
ATGGACAGCACCGAGGATGCGCAGAGATTTGGACCGAGGTGTATTCTTGG
TAGCGGTCTCTCCGCAGATGAAATCCTCGCCGCGCGCTCGATTCTCGAAG
AGGAGGACAGCGATCGAGAAGGCGTTACCCCCCTCGTCCTGCTTACCCCG
GAGATTGCGGATGAACGGGTGGGAGACGTCTTGACTAACGCCGCAGCCGT
GTATTCTTGGTAGCGGTCTCTCCGCAGATGAAATCCTCGCCGCGCGCTCG
ATTCTCGAAGAGGAGGACAGCGATCGAGAAGGCGTTACCCCCCTCGTCCT
GCTTACCCCGGAGATTGCGGATGAACGGGTGGGAGACGTCTTGACTAACG
CCGCAGCC
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