mRNA_M-pyrifera_M_contig10582.1248.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig10582.1248.1
Unique NamemRNA_M-pyrifera_M_contig10582.1248.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig10582.1248.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig10582contigM-pyrifera_M_contig10582:3602..4156 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size555
Cds size429
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig10582.1248.1prot_M-pyrifera_M_contig10582.1248.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig10582 3669..4097 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815567.2969775-UTR-M-pyrifera_M_contig10582:3601..36681622815567.2969775-UTR-M-pyrifera_M_contig10582:3601..3668Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig10582 3602..3668 +
1692277467.1307006-UTR-M-pyrifera_M_contig10582:3601..36681692277467.1307006-UTR-M-pyrifera_M_contig10582:3601..3668Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig10582 3602..3668 +
1622815567.3192782-UTR-M-pyrifera_M_contig10582:4097..41561622815567.3192782-UTR-M-pyrifera_M_contig10582:4097..4156Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig10582 4098..4156 +
1692277467.1514635-UTR-M-pyrifera_M_contig10582:4097..41561692277467.1514635-UTR-M-pyrifera_M_contig10582:4097..4156Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig10582 4098..4156 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815567.3069954-CDS-M-pyrifera_M_contig10582:3668..40971622815567.3069954-CDS-M-pyrifera_M_contig10582:3668..4097Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10582 3669..4097 +
1692277467.140603-CDS-M-pyrifera_M_contig10582:3668..40971692277467.140603-CDS-M-pyrifera_M_contig10582:3668..4097Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10582 3669..4097 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig10582.1248.1

>prot_M-pyrifera_M_contig10582.1248.1 ID=prot_M-pyrifera_M_contig10582.1248.1|Name=mRNA_M-pyrifera_M_contig10582.1248.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=143bp
MTATTPTVHPFIHPTLHFLCCDFALCHFTSTSRISTVHLNLQFILKTSII
PTFTSSSRSFDCSSQPSQPSLHPQDLRTVHFKNRNLRFILKSCFTVQLNL
DLTLETSRPFTSATPIFIWSLRPFKPFNSTFLLQSSSRMFYQ*
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mRNA from alignment at M-pyrifera_M_contig10582:3602..4156+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig10582.1248.1 ID=mRNA_M-pyrifera_M_contig10582.1248.1|Name=mRNA_M-pyrifera_M_contig10582.1248.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=555bp|location=Sequence derived from alignment at M-pyrifera_M_contig10582:3602..4156+ (Macrocystis pyrifera P11B4 male)
CGCGTGTCTTGTTAAATCGACGGCGAAAAAAAACGTGCCGCGTGTCATGT
GAACCCGATAAACGGTCATGACGGCAACCACTCCCACCGTCCATCCATTC
ATTCATCCAACCCTCCATTTTCTGTGTTGCGATTTCGCTTTGTGCCACTT
CACTTCAACCTCGAGAATTTCTACCGTTCATCTCAACCTTCAGTTTATCC
TCAAGACGTCCATCATCCCAACCTTTACATCATCTTCAAGATCTTTCGAT
TGTTCATCTCAACCATCGCAACCTTCGCTTCATCCTCAAGACCTTAGGAC
CGTTCATTTCAAAAATCGCAACCTTCGCTTCATCCTCAAGAGTTGTTTTA
CCGTTCAACTCAACCTTGATCTTACCCTCGAGACCTCTCGACCGTTCACC
TCCGCCACTCCAATCTTCATTTGGTCCTTAAGACCCTTCAAACCGTTCAA
CTCAACCTTTTTACTTCAATCATCCTCAAGAATGTTCTACCAGTAACGTT
CAGCTCGCACTTAATTCACTTCATCCTCAAAACCTTTCGACCGTTCATCT
CAACC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig10582:3602..4156+

>mRNA_M-pyrifera_M_contig10582.1248.1 ID=mRNA_M-pyrifera_M_contig10582.1248.1|Name=mRNA_M-pyrifera_M_contig10582.1248.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=858bp|location=Sequence derived from alignment at M-pyrifera_M_contig10582:3602..4156+ (Macrocystis pyrifera P11B4 male)
ATGACGGCAACCACTCCCACCGTCCATCCATTCATTCATCCAACCCTCCA
TTTTCTGTGTTGCGATTTCGCTTTGTGCCACTTCACTTCAACCTCGAGAA
TTTCTACCGTTCATCTCAACCTTCAGTTTATCCTCAAGACGTCCATCATC
CCAACCTTTACATCATCTTCAAGATCTTTCGATTGTTCATCTCAACCATC
GCAACCTTCGCTTCATCCTCAAGACCTTAGGACCGTTCATTTCAAAAATC
GCAACCTTCGCTTCATCCTCAAGAGTTGTTTTACCGTTCAACTCAACCTT
GATCTTACCCTCGAGACCTCTCGACCGTTCACCTCCGCCACTCCAATCTT
CATTTGGTCCTTAAGACCCTTCAAACCGTTCAACTCAACCTTTTTACTTC
AATCATCCTCAAGAATGTTCTACCAGTAAATGACGGCAACCACTCCCACC
GTCCATCCATTCATTCATCCAACCCTCCATTTTCTGTGTTGCGATTTCGC
TTTGTGCCACTTCACTTCAACCTCGAGAATTTCTACCGTTCATCTCAACC
TTCAGTTTATCCTCAAGACGTCCATCATCCCAACCTTTACATCATCTTCA
AGATCTTTCGATTGTTCATCTCAACCATCGCAACCTTCGCTTCATCCTCA
AGACCTTAGGACCGTTCATTTCAAAAATCGCAACCTTCGCTTCATCCTCA
AGAGTTGTTTTACCGTTCAACTCAACCTTGATCTTACCCTCGAGACCTCT
CGACCGTTCACCTCCGCCACTCCAATCTTCATTTGGTCCTTAAGACCCTT
CAAACCGTTCAACTCAACCTTTTTACTTCAATCATCCTCAAGAATGTTCT
ACCAGTAA
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