mRNA_M-pyrifera_M_contig105817.1247.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig105817.1247.1
Unique NamemRNA_M-pyrifera_M_contig105817.1247.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig105817.1247.1 vs. uniprot
Match: A0A5A8EHS8_CAFRO (Uncharacterized protein n=5 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8EHS8_CAFRO)

HSP 1 Score: 185 bits (470), Expect = 1.050e-51
Identity = 92/151 (60.93%), Postives = 111/151 (73.51%), Query Frame = 1
Query:    1 GTAVRVFETRSGRAVGSAYVHPTEVRQVRLSQHGSGLPRRRLALVDASGDLYVTPVTQHEPEKLATMCESCAWNDASDALLAAADGRSVLWMDPSSVWVDRDLCALAKVETDASDWGRLPTLISFIGPRATVQRGDGAILHTTINPFLPLL 453
            G  VRVFETRSGR VG  YVH   VRQV LSQ   GL  RRLA+VD++GDL+VTPV  HEPEKLA+M ES AW DA+DALLA ADGR VLW  PS+VWVDRDLC  A+ +  A  +GR+P ++S+ G R  V+RGDGA +H +++   PLL
Sbjct:  540 GRTVRVFETRSGRPVGVPYVHTVAVRQVALSQFTPGLAERRLAIVDSAGDLWVTPVLVHEPEKLASMVESAAWCDAADALLACADGRRVLWHCPSAVWVDRDLCEAAREDVAAPAFGRIPRVLSYRGSRCVVRRGDGAAVHASVSVNTPLL 690          
BLAST of mRNA_M-pyrifera_M_contig105817.1247.1 vs. uniprot
Match: UPI001E1DB922 (intraflagellar transport protein 80 homolog isoform X1 n=2 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1DB922)

HSP 1 Score: 116 bits (290), Expect = 2.870e-27
Identity = 62/154 (40.26%), Postives = 94/154 (61.04%), Query Frame = 1
Query:   10 VRVFETRSGRAVGSA--YVHPTEVRQVRLSQHGSGLPRRRLALVDASGDLYVTPV----TQHEPEKLATMCESCAWNDASDALLAAADGRSVLWMDPSSVWVDRDLCALAKVETDASDWGRLPTLISFIGPRATVQRGDGAILHTTINPFLPLL 453
            V VF+  SG+ +G      H  EV ++ L Q G G   RRLA++D + DLY+T V    T  +  KL TM  S AWNDA++ L A ADG+  +W  PS+V+VDRDL      E +AS++G+ P L+ F+G    ++R +G+++ T+I+P+  +L
Sbjct:  450 VYVFDALSGKPLGDGKPITHKLEVMEIALDQCGPGA-ERRLAIIDKNRDLYLTSVRVFGTDRKTVKLGTMIMSLAWNDATNMLAALADGKFTVWYYPSAVYVDRDLLPRTIFEKEASEFGKNPQLLQFVGNHIVIRRAEGSLVSTSISPYPAIL 602          
BLAST of mRNA_M-pyrifera_M_contig105817.1247.1 vs. uniprot
Match: A0A482UM66_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482UM66_9ARCH)

HSP 1 Score: 110 bits (275), Expect = 2.680e-26
Identity = 53/119 (44.54%), Postives = 77/119 (64.71%), Query Frame = 1
Query:  106 GLPRRRLALVDASGDLYVTPVTQHEPEKLATMCESCAWNDASDALLAAADGRSVLWMDPSSVWVDRDLCALAKVETDASD---WGRLPTLISFIGPRATVQRGDGAILHTTINPFLPLL 453
            GLP RRLA VD+S DLY+TP+ + +P KL+ M +S AWN+A+D L    DG+   W+ PS+   D +LCA AKV +DA+     G  P+++   GPR  V + DG++LH T + + P+L
Sbjct:    5 GLPERRLAFVDSSLDLYITPLLKPQPYKLSAMIDSIAWNEAADMLTCLGDGQCTTWLVPSAASTDSELCAAAKVTSDATLSTLLGPSPSILRAAGPRLCVLKADGSLLHITTSYYAPIL 123          
BLAST of mRNA_M-pyrifera_M_contig105817.1247.1 vs. uniprot
Match: A0A835Y449_9CHLO (Uncharacterized protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A835Y449_9CHLO)

HSP 1 Score: 112 bits (280), Expect = 6.310e-26
Identity = 57/151 (37.75%), Postives = 87/151 (57.62%), Query Frame = 1
Query:    1 GTAVRVFETRSGRAVGSAYVHPTEVRQVRLSQHGSGLPRRRLALVDASGDLYVTPVTQHEPEKLATMCESCAWNDASDALLAAADGRSVLWMDPSSVWVDRDLCALAKVETDASDWGRLPTLISFIGPRATVQRGDGAILHTTINPFLPLL 453
            GT VR F+T  GR +G  + H  EV+++ LSQ G+ +  R+L ++D + DLY+ PV +    KLA MC+S  W+DA+  L A  D R  +W  PS V+VD+DL    +     SD+G+   +  F G R  V+R DG ++    +P+  +L
Sbjct:  438 GTTVRFFDTAQGRPLGDPWSHTLEVKEIALSQAGT-INDRQLIVIDRNRDLYLLPVMKRNIAKLAAMCDSAKWHDATPMLGAMVDQRLCVWYYPSEVYVDKDLLNKTRYTKSDSDFGKSAQIQMFAGNRCLVRRSDGVLVSAATSPYPAVL 587          
BLAST of mRNA_M-pyrifera_M_contig105817.1247.1 vs. uniprot
Match: UPI001EE5F7DE (intraflagellar transport protein 80 homolog n=2 Tax=Haliotis TaxID=6452 RepID=UPI001EE5F7DE)

HSP 1 Score: 112 bits (279), Expect = 8.660e-26
Identity = 58/150 (38.67%), Postives = 91/150 (60.67%), Query Frame = 1
Query:   10 VRVFETRSGRAVGSA--YVHPTEVRQVRLSQHGSGLPRRRLALVDASGDLYVTPV----TQHEPEKLATMCESCAWNDASDALLAAADGRSVLWMDPSSVWVDRDLCALAKVETDASDWGRLPTLISFIGPRATVQRGDGAILHTTINPF 441
            V VF+ ++G+++G      H  EV +V L Q G     RRLA++D + DLY+T V    T  +  KL TM +S AWND ++ L A  DG  ++W  P++V+VDRDL        DAS++G+ P LI F+G    ++R +G+++ TT++P+
Sbjct:  443 VYVFDAQTGKSMGDGKPVTHKVEVMEVALDQFGPAT-ERRLAIIDKNRDLYLTSVRVFGTDRKSVKLGTMIQSLAWNDDTNMLAAMTDGCVLVWYYPNAVFVDRDLLPKTLYRKDASEFGKAPQLIDFVGNHLILRRSEGSLISTTVSPY 591          
BLAST of mRNA_M-pyrifera_M_contig105817.1247.1 vs. uniprot
Match: A0A1S3HLL6_LINUN (intraflagellar transport protein 80 homolog isoform X1 n=3 Tax=Lingula unguis TaxID=7574 RepID=A0A1S3HLL6_LINUN)

HSP 1 Score: 110 bits (274), Expect = 4.060e-25
Identity = 59/154 (38.31%), Postives = 91/154 (59.09%), Query Frame = 1
Query:   10 VRVFETRSGRAVGSA--YVHPTEVRQVRLSQHGSGLPRRRLALVDASGDLYVTPV----TQHEPEKLATMCESCAWNDASDALLAAADGRSVLWMDPSSVWVDRDLCALAKVETDASDWGRLPTLISFIGPRATVQRGDGAILHTTINPFLPLL 453
            + +FE  +G+ +G      H  EV ++ L Q G     RRLA++D + DLY+T V    T+ +  KL TM  S  WND S+ L A ADG+  +W  P+  +VDRDL      E DAS++G+ P L+SF+G   +++R DG+++ T I+P+  +L
Sbjct:  443 IHLFEATTGKPLGDGKPITHKLEVMEIALDQCGPS-NERRLAIIDKNRDLYLTSVRTFGTERKTVKLGTMILSQVWNDNSNMLAAMADGKFTVWYYPNVAYVDRDLLPKTVCEKDASEFGKNPQLLSFLGSHVSLRRADGSLVSTGISPYPAML 595          
BLAST of mRNA_M-pyrifera_M_contig105817.1247.1 vs. uniprot
Match: K1R508_CRAGI (Intraflagellar transport protein 80-like protein n=5 Tax=Crassostrea TaxID=6564 RepID=K1R508_CRAGI)

HSP 1 Score: 109 bits (272), Expect = 7.470e-25
Identity = 54/154 (35.06%), Postives = 95/154 (61.69%), Query Frame = 1
Query:   10 VRVFETRSGRAVGSA--YVHPTEVRQVRLSQHGSGLPRRRLALVDASGDLYVTPV----TQHEPEKLATMCESCAWNDASDALLAAADGRSVLWMDPSSVWVDRDLCALAKVETDASDWGRLPTLISFIGPRATVQRGDGAILHTTINPFLPLL 453
            + VF+ ++G+ +G      H  EV ++ L Q G     RRLA++D + DLY+T V    ++ +  KL  M +S  WND+++ L A ADG+  +W  P++++VDRDL +    E +AS++G+ P L++FIG    ++R +G+++ T I+P+  +L
Sbjct:  381 IYVFDAQNGKPLGDGKPITHKLEVMEIALDQCGPAT-ERRLAIIDKNRDLYLTSVRVFGSERKSNKLGNMIQSLCWNDSANMLAALADGKFTVWYYPNTIYVDRDLASRTVFEKEASEFGKNPQLLNFIGNHIIIRRAEGSLVGTGISPYPAIL 533          
BLAST of mRNA_M-pyrifera_M_contig105817.1247.1 vs. uniprot
Match: A0A1V9YGR8_9STRA (Intraflagellar Transport protein 80 n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YGR8_9STRA)

HSP 1 Score: 108 bits (271), Expect = 1.030e-24
Identity = 56/148 (37.84%), Postives = 88/148 (59.46%), Query Frame = 1
Query:   10 VRVFETRSGRAVGSAYVHPTEVRQVRLSQHGSGLPRRRLALVDASGDLYVTPVTQHEPEKLATMCESCAWNDASDALLAAADGRSVLWMDPSSVWVDRDLCALAKVETDASDWGRLPTLISFIGPRATVQRGDGAILHTTINPFLPLL 453
            VR F+  SG+A+  A+ H  EV ++ LS +G+    R+L  +D + DL++  VT     KL    ++ AWNDAS+ L+A +D +   W+ P+ V+VDR L   A    D  D+ ++  + SF+GPR TV+R DGAIL   ++P+  +L
Sbjct:  446 VRCFDINSGKALPVAFTHSLEVAELALSHYGT-FADRKLFFIDTNRDLHLARVTHKGTFKLQAQVDTAAWNDASEMLVAISDAKVFCWLYPNMVYVDRTLLPEAIETKDGVDYMKMAQITSFVGPRFTVRRADGAILAGGVSPYSTVL 592          
BLAST of mRNA_M-pyrifera_M_contig105817.1247.1 vs. uniprot
Match: UPI001CFAA37E (intraflagellar transport protein 80 homolog isoform X1 n=3 Tax=Protopterus annectens TaxID=7888 RepID=UPI001CFAA37E)

HSP 1 Score: 108 bits (269), Expect = 1.910e-24
Identity = 52/152 (34.21%), Postives = 93/152 (61.18%), Query Frame = 1
Query:   16 VFETRSGRAVGSA--YVHPTEVRQVRLSQHGSGLPRRRLALVDASGDLYVTPVTQHEPE----KLATMCESCAWNDASDALLAAADGRSVLWMDPSSVWVDRDLCALAKVETDASDWGRLPTLISFIGPRATVQRGDGAILHTTINPFLPLL 453
            +F+T SG+ +G    + H  E+ +  L+Q G     R++A +D + DLY+T V +   E    K+ TM  + AWNDA++ L    D   ++W  PS+V+VD+DL +    E DAS++G+ P +++F+G + T++R DG++++T  +P+  +L
Sbjct:  442 MFDTASGKLLGDGKPFAHKIEILETALNQSGPA-QERKMAFLDKNHDLYITAVQRLGKEQKVFKIGTMVHTMAWNDATNILCGLHDNSFIVWYYPSTVYVDKDLLSKTIFEKDASEFGKTPQIVNFVGSQVTIRRTDGSLVYTNTSPYPAIL 592          
BLAST of mRNA_M-pyrifera_M_contig105817.1247.1 vs. uniprot
Match: A0A4W3JLD7_CALMI (Uncharacterized protein n=5 Tax=Callorhinchus milii TaxID=7868 RepID=A0A4W3JLD7_CALMI)

HSP 1 Score: 103 bits (257), Expect = 7.880e-23
Identity = 49/152 (32.24%), Postives = 95/152 (62.50%), Query Frame = 1
Query:   16 VFETRSGRAVGSA--YVHPTEVRQVRLSQHGSGLPRRRLALVDASGDLYVTPVTQHEPE----KLATMCESCAWNDASDALLAAADGRSVLWMDPSSVWVDRDLCALAKVETDASDWGRLPTLISFIGPRATVQRGDGAILHTTINPFLPLL 453
            + +  SG+++G     +H  EV ++ L Q GS    R++A++D + DLY++ V +   E    K++TM  S AWND  + L    +   V+W  P++V+VD++L +    E DAS++G+ P +++++G + T++R DG++++T+I+P+  +L
Sbjct:  441 LIDALSGKSLGDGKPLIHKIEVMEIALDQFGSP-NERKIAIIDKNRDLYISSVRRFGKEQRIIKMSTMVHSMAWNDTINVLCGLQNMHFVVWYYPNTVYVDKELLSKTVYEKDASEFGKSPQIVNYVGNQVTIRRADGSLIYTSISPYPAIL 591          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig105817.1247.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5A8EHS8_CAFRO1.050e-5160.93Uncharacterized protein n=5 Tax=Cafeteria roenberg... [more]
UPI001E1DB9222.870e-2740.26intraflagellar transport protein 80 homolog isofor... [more]
A0A482UM66_9ARCH2.680e-2644.54Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A835Y449_9CHLO6.310e-2637.75Uncharacterized protein n=1 Tax=Edaphochlamys deba... [more]
UPI001EE5F7DE8.660e-2638.67intraflagellar transport protein 80 homolog n=2 Ta... [more]
A0A1S3HLL6_LINUN4.060e-2538.31intraflagellar transport protein 80 homolog isofor... [more]
K1R508_CRAGI7.470e-2535.06Intraflagellar transport protein 80-like protein n... [more]
A0A1V9YGR8_9STRA1.030e-2437.84Intraflagellar Transport protein 80 n=1 Tax=Achlya... [more]
UPI001CFAA37E1.910e-2434.21intraflagellar transport protein 80 homolog isofor... [more]
A0A4W3JLD7_CALMI7.880e-2332.24Uncharacterized protein n=5 Tax=Callorhinchus mili... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig105817contigM-pyrifera_M_contig105817:180..632 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score118.2
Seed ortholog evalue3.2e-24
Seed eggNOG ortholog2880.D8LIC7
Preferred nameIFT80
KEGG koko:K19678
Hectar predicted targeting categoryother localisation
GOsGO:0002119,GO:0002164,GO:0003674,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005813,GO:0005815,GO:0005856,GO:0005929,GO:0006935,GO:0006996,GO:0007275,GO:0008150,GO:0009593,GO:0009605,GO:0009791,GO:0009966,GO:0009968,GO:0009987,GO:0010035,GO:0010646,GO:0010648,GO:0015630,GO:0016043,GO:0017015,GO:0022607,GO:0023051,GO:0023057,GO:0030030,GO:0030031,GO:0030512,GO:0030990,GO:0030992,GO:0032501,GO:0032502,GO:0032991,GO:0036064,GO:0040008,GO:0040011,GO:0040012,GO:0040014,GO:0040017,GO:0040018,GO:0040024,GO:0042221,GO:0042330,GO:0042995,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043327,GO:0044085,GO:0044422,GO:0044424,GO:0044430,GO:0044441,GO:0044446,GO:0044463,GO:0044464,GO:0044782,GO:0045927,GO:0048518,GO:0048519,GO:0048520,GO:0048523,GO:0048583,GO:0048585,GO:0048638,GO:0048639,GO:0048856,GO:0050789,GO:0050793,GO:0050794,GO:0050795,GO:0050896,GO:0051094,GO:0051239,GO:0051240,GO:0051606,GO:0060271,GO:0065007,GO:0070925,GO:0071840,GO:0090092,GO:0090101,GO:0090287,GO:0090288,GO:0090325,GO:0090326,GO:0097730,GO:0120025,GO:0120031,GO:0120036,GO:0120038,GO:1903844,GO:1903845,GO:1905515
EggNOG free text desc.cilium assembly
EggNOG OGsCOG2319@1,KOG1524@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Exons1
Model size453
Cds size453
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815567.18163-CDS-M-pyrifera_M_contig105817:179..6321622815567.18163-CDS-M-pyrifera_M_contig105817:179..632Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig105817 180..632 +
1692277467.0696182-CDS-M-pyrifera_M_contig105817:179..6321692277467.0696182-CDS-M-pyrifera_M_contig105817:179..632Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig105817 180..632 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig105817.1247.1prot_M-pyrifera_M_contig105817.1247.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig105817 180..632 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig105817.1247.1

>prot_M-pyrifera_M_contig105817.1247.1 ID=prot_M-pyrifera_M_contig105817.1247.1|Name=mRNA_M-pyrifera_M_contig105817.1247.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=151bp
GTAVRVFETRSGRAVGSAYVHPTEVRQVRLSQHGSGLPRRRLALVDASGD
LYVTPVTQHEPEKLATMCESCAWNDASDALLAAADGRSVLWMDPSSVWVD
RDLCALAKVETDASDWGRLPTLISFIGPRATVQRGDGAILHTTINPFLPL
L
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mRNA from alignment at M-pyrifera_M_contig105817:180..632+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig105817.1247.1 ID=mRNA_M-pyrifera_M_contig105817.1247.1|Name=mRNA_M-pyrifera_M_contig105817.1247.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=453bp|location=Sequence derived from alignment at M-pyrifera_M_contig105817:180..632+ (Macrocystis pyrifera P11B4 male)
GGTACAGCGGTGAGGGTGTTTGAGACGAGAAGTGGACGTGCAGTGGGGAG TGCTTATGTGCATCCTACTGAAGTGCGTCAAGTTCGTTTGTCGCAACATG GGAGTGGGTTGCCTCGTCGTCGCTTGGCGCTTGTTGATGCAAGTGGAGAT TTGTACGTGACTCCAGTGACGCAACATGAACCAGAGAAACTTGCTACGAT GTGTGAGAGTTGTGCTTGGAATGATGCTTCGGATGCTTTGCTTGCGGCTG CTGATGGGCGATCCGTGTTGTGGATGGATCCAAGTAGTGTTTGGGTGGAT CGTGATTTGTGTGCTTTGGCAAAAGTAGAAACGGATGCTTCGGATTGGGG GAGGTTGCCAACTTTGATTTCCTTCATTGGACCTCGTGCAACTGTACAAC GAGGAGATGGAGCAATTCTCCACACCACGATCAACCCATTCCTTCCACTC CTT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig105817:180..632+

>mRNA_M-pyrifera_M_contig105817.1247.1 ID=mRNA_M-pyrifera_M_contig105817.1247.1|Name=mRNA_M-pyrifera_M_contig105817.1247.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=906bp|location=Sequence derived from alignment at M-pyrifera_M_contig105817:180..632+ (Macrocystis pyrifera P11B4 male)
GGTACAGCGGTGAGGGTGTTTGAGACGAGAAGTGGACGTGCAGTGGGGAG
TGCTTATGTGCATCCTACTGAAGTGCGTCAAGTTCGTTTGTCGCAACATG
GGAGTGGGTTGCCTCGTCGTCGCTTGGCGCTTGTTGATGCAAGTGGAGAT
TTGTACGTGACTCCAGTGACGCAACATGAACCAGAGAAACTTGCTACGAT
GTGTGAGAGTTGTGCTTGGAATGATGCTTCGGATGCTTTGCTTGCGGCTG
CTGATGGGCGATCCGTGTTGTGGATGGATCCAAGTAGTGTTTGGGTGGAT
CGTGATTTGTGTGCTTTGGCAAAAGTAGAAACGGATGCTTCGGATTGGGG
GAGGTTGCCAACTTTGATTTCCTTCATTGGACCTCGTGCAACTGTACAAC
GAGGAGATGGAGCAATTCTCCACACCACGATCAACCCATTCCTTCCACTC
CTTGGTACAGCGGTGAGGGTGTTTGAGACGAGAAGTGGACGTGCAGTGGG
GAGTGCTTATGTGCATCCTACTGAAGTGCGTCAAGTTCGTTTGTCGCAAC
ATGGGAGTGGGTTGCCTCGTCGTCGCTTGGCGCTTGTTGATGCAAGTGGA
GATTTGTACGTGACTCCAGTGACGCAACATGAACCAGAGAAACTTGCTAC
GATGTGTGAGAGTTGTGCTTGGAATGATGCTTCGGATGCTTTGCTTGCGG
CTGCTGATGGGCGATCCGTGTTGTGGATGGATCCAAGTAGTGTTTGGGTG
GATCGTGATTTGTGTGCTTTGGCAAAAGTAGAAACGGATGCTTCGGATTG
GGGGAGGTTGCCAACTTTGATTTCCTTCATTGGACCTCGTGCAACTGTAC
AACGAGGAGATGGAGCAATTCTCCACACCACGATCAACCCATTCCTTCCA
CTCCTT
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