mRNA_M-pyrifera_M_contig105809.1243.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig105809.1243.1
Unique NamemRNA_M-pyrifera_M_contig105809.1243.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig105809.1243.1 vs. uniprot
Match: A0A5A8EKG1_CAFRO (TYR_PHOSPHATASE_2 domain-containing protein n=5 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8EKG1_CAFRO)

HSP 1 Score: 126 bits (316), Expect = 1.830e-31
Identity = 61/128 (47.66%), Postives = 78/128 (60.94%), Query Frame = 1 
Query:    4 LFEKFELHGGAFHTEVVLAKSEGRLIGGLADDGEFTMSWFRQPQFGEG---------------------EFAEIVGVKGGFYQPSVDDVRCRLLCKATNTENEGHTGFGEWGPLACDPKVKELAKKKI 324
            LF  FELHGG F TE ++AKS G+L+GGL DDG   MSW R  +  EG                     EF ++ GV  GFYQP+ DD+ CR+LCK ++ +NE  +GFGEWGPLACDP+V+  A+  I
Sbjct:  228 LFGGFELHGGPFQTEAIVAKSGGKLVGGLDDDGFLRMSWLRCGRIPEGSRPKPKSGKPGSGGDDDAAADEFVDVEGVTTGFYQPNADDIGCRVLCKCSHAKNETASGFGEWGPLACDPEVEAEARALI 355
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BLAST of mRNA_M-pyrifera_M_contig105809.1243.1 vs. uniprot
Match: A0A812MX10_9DINO (Dsp protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812MX10_9DINO)

HSP 1 Score: 122 bits (306), Expect = 3.960e-30
Identity = 54/105 (51.43%), Postives = 73/105 (69.52%), Query Frame = 1 
Query:   10 EKFELHGGAFHTEVVLAKSEGRLIGGLADDGEFTMSWFRQPQFGEGEFAEIVGVKGGFYQPSVDDVRCRLLCKATNTENEGHTGFGEWGPLACDPKVKELAKKKI 324
            EKFELHGG F T++++A++  R++GGL D     M+W+RQ   G G+F E+ GVKGGFYQPS DD+  R+LC+AT  E+EG + FGEWGPLA  P +    +  I
Sbjct:   52 EKFELHGGPFITDIIMARAGDRMLGGLEDQATLQMTWYRQA--GGGDFDELPGVKGGFYQPSADDIGARVLCRATALEDEGMSAFGEWGPLAAPPDLTRRVEDAI 154
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig105809.1243.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A5A8EKG1_CAFRO1.830e-3147.66TYR_PHOSPHATASE_2 domain-containing protein n=5 Ta... [more]
A0A812MX10_9DINO3.960e-3051.43Dsp protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig105809contigM-pyrifera_M_contig105809:100..423 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size324
Cds size324
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815566.9492164-CDS-M-pyrifera_M_contig105809:99..4231622815566.9492164-CDS-M-pyrifera_M_contig105809:99..423Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig105809 100..423 -
1692277466.93057-CDS-M-pyrifera_M_contig105809:99..4231692277466.93057-CDS-M-pyrifera_M_contig105809:99..423Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig105809 100..423 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig105809.1243.1prot_M-pyrifera_M_contig105809.1243.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig105809 100..423 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig105809.1243.1

>prot_M-pyrifera_M_contig105809.1243.1 ID=prot_M-pyrifera_M_contig105809.1243.1|Name=mRNA_M-pyrifera_M_contig105809.1243.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=108bp
RLFEKFELHGGAFHTEVVLAKSEGRLIGGLADDGEFTMSWFRQPQFGEGE
FAEIVGVKGGFYQPSVDDVRCRLLCKATNTENEGHTGFGEWGPLACDPKV
KELAKKKI
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mRNA from alignment at M-pyrifera_M_contig105809:100..423-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig105809.1243.1 ID=mRNA_M-pyrifera_M_contig105809.1243.1|Name=mRNA_M-pyrifera_M_contig105809.1243.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=324bp|location=Sequence derived from alignment at M-pyrifera_M_contig105809:100..423- (Macrocystis pyrifera P11B4 male)
CGTTTGTTCGAGAAGTTTGAGTTGCACGGTGGGGCGTTCCACACGGAGGT
TGTGCTGGCGAAGAGCGAGGGTCGTTTGATCGGTGGGTTGGCGGATGATG
GGGAGTTTACGATGTCTTGGTTCCGGCAACCGCAGTTTGGGGAGGGGGAG
TTTGCCGAGATTGTGGGGGTAAAAGGTGGGTTTTACCAGCCTTCAGTGGA
TGATGTGCGGTGTCGGTTGCTCTGCAAGGCGACGAATACGGAGAATGAGG
GGCATACTGGGTTTGGGGAGTGGGGACCGCTGGCGTGTGACCCCAAAGTG
AAGGAGTTGGCCAAGAAGAAAATC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig105809:100..423-

>mRNA_M-pyrifera_M_contig105809.1243.1 ID=mRNA_M-pyrifera_M_contig105809.1243.1|Name=mRNA_M-pyrifera_M_contig105809.1243.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=648bp|location=Sequence derived from alignment at M-pyrifera_M_contig105809:100..423- (Macrocystis pyrifera P11B4 male)
CGTTTGTTCGAGAAGTTTGAGTTGCACGGTGGGGCGTTCCACACGGAGGT
TGTGCTGGCGAAGAGCGAGGGTCGTTTGATCGGTGGGTTGGCGGATGATG
GGGAGTTTACGATGTCTTGGTTCCGGCAACCGCAGTTTGGGGAGGGGGAG
TTTGCCGAGATTGTGGGGGTAAAAGGTGGGTTTTACCAGCCTTCAGTGGA
TGATGTGCGGTGTCGGTTGCTCTGCAAGGCGACGAATACGGAGAATGAGG
GGCATACTGGGTTTGGGGAGTGGGGACCGCTGGCGTGTGACCCCAAAGTG
AAGGAGTTGGCCAAGAAGAAAATCCGTTTGTTCGAGAAGTTTGAGTTGCA
CGGTGGGGCGTTCCACACGGAGGTTGTGCTGGCGAAGAGCGAGGGTCGTT
TGATCGGTGGGTTGGCGGATGATGGGGAGTTTACGATGTCTTGGTTCCGG
CAACCGCAGTTTGGGGAGGGGGAGTTTGCCGAGATTGTGGGGGTAAAAGG
TGGGTTTTACCAGCCTTCAGTGGATGATGTGCGGTGTCGGTTGCTCTGCA
AGGCGACGAATACGGAGAATGAGGGGCATACTGGGTTTGGGGAGTGGGGA
CCGCTGGCGTGTGACCCCAAAGTGAAGGAGTTGGCCAAGAAGAAAATC
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