mRNA_M-pyrifera_M_contig105764.1233.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig105764.1233.1
Unique NamemRNA_M-pyrifera_M_contig105764.1233.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig105764.1233.1 vs. uniprot
Match: A0A7S1CII1_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CII1_9STRA)

HSP 1 Score: 102 bits (255), Expect = 2.320e-24
Identity = 48/85 (56.47%), Postives = 60/85 (70.59%), Query Frame = 1
Query:    1 KARKVLTLAEKKARNAHDIDYDERNPFKVCAATHKPIYVSSPSVSCPYCGAAHLPEFKGKLCRLCQLSVVGVETLGLVCFADDRK 255
            KA+KVL  +E KARN+  IDYDERNPF+VC  +  PIY  SP V+CPY   A+ PEFK  +CR C ++ VG+ETLGLVC A   +
Sbjct:  259 KAKKVLRASEAKARNSITIDYDERNPFRVCVGSLTPIYKGSPIVACPYTNVAYKPEFKDSVCRACGMAQVGLETLGLVCSAVKTR 343          
BLAST of mRNA_M-pyrifera_M_contig105764.1233.1 vs. uniprot
Match: A0A821HMV6_9BILA (Hypothetical protein n=1 Tax=Rotaria sp. Silwood2 TaxID=2762512 RepID=A0A821HMV6_9BILA)

HSP 1 Score: 89.4 bits (220), Expect = 1.880e-21
Identity = 40/75 (53.33%), Postives = 56/75 (74.67%), Query Frame = 1
Query:    7 RKVLTLAEKKARNAHDIDYDERNPFKVCAATHKPIYVSSPSVSCPYCGAAHLPEFKGKLCRLCQLSVVGVETLGL 231
            RKVL++ EK   + H ++YDE NPF +CAA++ PIY  +P V CP  GAA+LPEFKG+LCR+ + + +G E+LGL
Sbjct:   14 RKVLSVCEKNPVDEHPLNYDEYNPFDICAASYVPIYRGNPLVKCPLSGAAYLPEFKGQLCRVTKATEIGKESLGL 88          
BLAST of mRNA_M-pyrifera_M_contig105764.1233.1 vs. uniprot
Match: A0A7J7MN17_9MAGN (Coatomer subunit alpha n=1 Tax=Kingdonia uniflora TaxID=39325 RepID=A0A7J7MN17_9MAGN)

HSP 1 Score: 94.7 bits (234), Expect = 8.840e-21
Identity = 43/84 (51.19%), Postives = 56/84 (66.67%), Query Frame = 1
Query:    4 ARKVLTLAEKKARNAHDIDYDERNPFKVCAATHKPIYVSSPSVSCPYCGAAHLPEFKGKLCRLCQLSVVGVETLGLVCFADDRK 255
            AR+VL  +EKK  +   ++YD RNPF VCAATH PIY     V+CPYCGA  +P   GKLC +C L+VVG +  GL+C A  ++
Sbjct: 1163 ARQVLQASEKKMTDQTPLNYDFRNPFVVCAATHVPIYRGQKDVACPYCGARFVPAQDGKLCTICDLAVVGSDASGLLCSASQKR 1246          
BLAST of mRNA_M-pyrifera_M_contig105764.1233.1 vs. uniprot
Match: A0A7S2RES0_9STRA (Coatomer subunit alpha n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RES0_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 2.250e-20
Identity = 44/78 (56.41%), Postives = 56/78 (71.79%), Query Frame = 1
Query:    1 KARKVLTLAEKKARNAHDIDYDERNPFKVCAATHKPIYVSSPSVSCPYCGAAHLPEFKGKLCRLCQLSVVGVETLGLV 234
            KA+KV+  +E+ ARN H + YDERNPF + + T  PIY  SP V C YC AA+ P+ K K+CR C LS+VGVET+GLV
Sbjct: 1172 KAQKVVLKSEQMARNEHQLHYDERNPFDIDSDTFLPIYRGSPVVRCAYCNAAYSPDMKNKVCRACGLSLVGVETIGLV 1249          
BLAST of mRNA_M-pyrifera_M_contig105764.1233.1 vs. uniprot
Match: A0A183CUA6_9BILA (Uncharacterized protein n=1 Tax=Gongylonema pulchrum TaxID=637853 RepID=A0A183CUA6_9BILA)

HSP 1 Score: 92.4 bits (228), Expect = 5.660e-20
Identity = 37/75 (49.33%), Postives = 55/75 (73.33%), Query Frame = 1
Query:    7 RKVLTLAEKKARNAHDIDYDERNPFKVCAATHKPIYVSSPSVSCPYCGAAHLPEFKGKLCRLCQLSVVGVETLGL 231
            RKVLT+ EK   +AH++ YDE NPF +C+ T KP+Y   P V CP+CGA++ P+F G+LC +C+++ VG + +GL
Sbjct:  799 RKVLTVTEKDPTDAHELQYDEHNPFVICSRTFKPLYRGKPQVKCPFCGASYAPDFTGELCGVCEVAEVGRDAVGL 873          
BLAST of mRNA_M-pyrifera_M_contig105764.1233.1 vs. uniprot
Match: A0A0N5AHK6_9BILA (Coatomer subunit alpha n=1 Tax=Syphacia muris TaxID=451379 RepID=A0A0N5AHK6_9BILA)

HSP 1 Score: 91.7 bits (226), Expect = 1.070e-19
Identity = 38/75 (50.67%), Postives = 51/75 (68.00%), Query Frame = 1
Query:    7 RKVLTLAEKKARNAHDIDYDERNPFKVCAATHKPIYVSSPSVSCPYCGAAHLPEFKGKLCRLCQLSVVGVETLGL 231
            RKVL  AEK  ++AH ++YDE NPF VCA T  P+Y   P V CP+CGA + PE  GK+C +C+++ +G E  GL
Sbjct: 1149 RKVLAAAEKDPKDAHKLNYDEHNPFVVCAKTFSPLYRGKPQVKCPFCGACYCPELSGKICNVCEVAEIGKEASGL 1223          
BLAST of mRNA_M-pyrifera_M_contig105764.1233.1 vs. uniprot
Match: A0A817G9C2_9BILA (Hypothetical protein n=1 Tax=Rotaria sp. Silwood2 TaxID=2762512 RepID=A0A817G9C2_9BILA)

HSP 1 Score: 89.4 bits (220), Expect = 1.400e-19
Identity = 40/75 (53.33%), Postives = 56/75 (74.67%), Query Frame = 1
Query:    7 RKVLTLAEKKARNAHDIDYDERNPFKVCAATHKPIYVSSPSVSCPYCGAAHLPEFKGKLCRLCQLSVVGVETLGL 231
            RKVL++ EK   + H ++YDE NPF +CAA++ PIY  +P V CP  GAA+LPEFKG+LCR+ + + +G E+LGL
Sbjct:   14 RKVLSVCEKNPVDEHPLNYDEYNPFDICAASYVPIYRGNPLVKCPLSGAAYLPEFKGQLCRVTKATEIGKESLGL 88          
BLAST of mRNA_M-pyrifera_M_contig105764.1233.1 vs. uniprot
Match: A0A7M7NBK8_STRPU (Coatomer subunit alpha n=3 Tax=Echinacea TaxID=7674 RepID=A0A7M7NBK8_STRPU)

HSP 1 Score: 90.9 bits (224), Expect = 1.990e-19
Identity = 38/75 (50.67%), Postives = 54/75 (72.00%), Query Frame = 1
Query:    7 RKVLTLAEKKARNAHDIDYDERNPFKVCAATHKPIYVSSPSVSCPYCGAAHLPEFKGKLCRLCQLSVVGVETLGL 231
            RK+L   EK   +AH ++YDE NPF +CAAT+KPIY   P   CP  GA +LP+FKG++CR+ Q++ +G +T+GL
Sbjct: 1143 RKILQACEKSPNDAHKLNYDEHNPFDICAATYKPIYRGKPVEKCPLSGACYLPQFKGEVCRVTQVTEIGKDTIGL 1217          
BLAST of mRNA_M-pyrifera_M_contig105764.1233.1 vs. uniprot
Match: A0A7S3GXR2_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GXR2_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 2.380e-19
Identity = 40/78 (51.28%), Postives = 57/78 (73.08%), Query Frame = 1
Query:    1 KARKVLTLAEKKARNAHDIDYDERNPFKVCAATHKPIYVSSPSVSCPYCGAAHLPEFKGKLCRLCQLSVVGVETLGLV 234
            KA+KVL  +E++ RN + IDYDERNPF +  +T KP+Y  +P V C YC A +  ++KGKLC +C +S VG++T+GLV
Sbjct:  415 KAQKVLQKSEQQGRNEYTIDYDERNPFSLDCSTLKPLYKGTPLVKCSYCAACYAVDYKGKLCLICGISTVGLDTVGLV 492          
BLAST of mRNA_M-pyrifera_M_contig105764.1233.1 vs. uniprot
Match: A0A7S3GXJ7_9STRA (Coatomer subunit alpha n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GXJ7_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 2.720e-19
Identity = 40/78 (51.28%), Postives = 57/78 (73.08%), Query Frame = 1
Query:    1 KARKVLTLAEKKARNAHDIDYDERNPFKVCAATHKPIYVSSPSVSCPYCGAAHLPEFKGKLCRLCQLSVVGVETLGLV 234
            KA+KVL  +E++ RN + IDYDERNPF +  +T KP+Y  +P V C YC A +  ++KGKLC +C +S VG++T+GLV
Sbjct: 1172 KAQKVLQKSEQQGRNEYTIDYDERNPFSLDCSTLKPLYKGTPLVKCSYCAACYAVDYKGKLCLICGISTVGLDTVGLV 1249          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig105764.1233.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S1CII1_9STRA2.320e-2456.47Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
A0A821HMV6_9BILA1.880e-2153.33Hypothetical protein n=1 Tax=Rotaria sp. Silwood2 ... [more]
A0A7J7MN17_9MAGN8.840e-2151.19Coatomer subunit alpha n=1 Tax=Kingdonia uniflora ... [more]
A0A7S2RES0_9STRA2.250e-2056.41Coatomer subunit alpha n=1 Tax=Rhizochromulina mar... [more]
A0A183CUA6_9BILA5.660e-2049.33Uncharacterized protein n=1 Tax=Gongylonema pulchr... [more]
A0A0N5AHK6_9BILA1.070e-1950.67Coatomer subunit alpha n=1 Tax=Syphacia muris TaxI... [more]
A0A817G9C2_9BILA1.400e-1953.33Hypothetical protein n=1 Tax=Rotaria sp. Silwood2 ... [more]
A0A7M7NBK8_STRPU1.990e-1950.67Coatomer subunit alpha n=3 Tax=Echinacea TaxID=767... [more]
A0A7S3GXR2_9STRA2.380e-1951.28Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A7S3GXJ7_9STRA2.720e-1951.28Coatomer subunit alpha n=1 Tax=Spumella elongata T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig105764contigM-pyrifera_M_contig105764:376..633 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score96.3
Seed ortholog evalue7.5e-18
Seed eggNOG ortholog36331.EPrPI00000017744
KEGG koko:K05236
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Coatomer protein complex. Source PGD
EggNOG OGs1MATE@121069,KOG0292@1,KOG0292@2759
Ec32 ortholog descriptionVesicle coat complex COPI, alpha subunit
Ec32 orthologEc-27_001800.1
COG Functional cat.U
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131,ko04147
Exons1
Model size258
Cds size258
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815566.3753207-CDS-M-pyrifera_M_contig105764:375..6331622815566.3753207-CDS-M-pyrifera_M_contig105764:375..633Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig105764 376..633 -
1692277466.6302755-CDS-M-pyrifera_M_contig105764:375..6331692277466.6302755-CDS-M-pyrifera_M_contig105764:375..633Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig105764 376..633 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig105764.1233.1prot_M-pyrifera_M_contig105764.1233.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig105764 376..633 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig105764.1233.1

>prot_M-pyrifera_M_contig105764.1233.1 ID=prot_M-pyrifera_M_contig105764.1233.1|Name=mRNA_M-pyrifera_M_contig105764.1233.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=86bp
KARKVLTLAEKKARNAHDIDYDERNPFKVCAATHKPIYVSSPSVSCPYCG
AAHLPEFKGKLCRLCQLSVVGVETLGLVCFADDRK*
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mRNA from alignment at M-pyrifera_M_contig105764:376..633-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig105764.1233.1 ID=mRNA_M-pyrifera_M_contig105764.1233.1|Name=mRNA_M-pyrifera_M_contig105764.1233.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=258bp|location=Sequence derived from alignment at M-pyrifera_M_contig105764:376..633- (Macrocystis pyrifera P11B4 male)
AAGGCGCGCAAGGTGCTGACGCTGGCGGAGAAGAAGGCGCGGAACGCACA CGACATCGACTACGACGAGCGCAACCCGTTCAAGGTGTGCGCGGCGACGC ACAAGCCCATCTACGTCAGCTCGCCGTCCGTGTCGTGCCCGTACTGTGGC GCCGCGCACCTCCCAGAGTTCAAGGGGAAGCTGTGCCGTCTGTGCCAGCT GTCTGTCGTTGGCGTGGAAACGCTGGGATTGGTATGTTTTGCGGACGACC GGAAGTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig105764:376..633-

>mRNA_M-pyrifera_M_contig105764.1233.1 ID=mRNA_M-pyrifera_M_contig105764.1233.1|Name=mRNA_M-pyrifera_M_contig105764.1233.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=516bp|location=Sequence derived from alignment at M-pyrifera_M_contig105764:376..633- (Macrocystis pyrifera P11B4 male)
AAGGCGCGCAAGGTGCTGACGCTGGCGGAGAAGAAGGCGCGGAACGCACA
CGACATCGACTACGACGAGCGCAACCCGTTCAAGGTGTGCGCGGCGACGC
ACAAGCCCATCTACGTCAGCTCGCCGTCCGTGTCGTGCCCGTACTGTGGC
GCCGCGCACCTCCCAGAGTTCAAGGGGAAGCTGTGCCGTCTGTGCCAGCT
GTCTGTCGTTGGCGTGGAAACGCTGGGATTGGTATGTTTTGCGGACGACC
GGAAGTGAAAGGCGCGCAAGGTGCTGACGCTGGCGGAGAAGAAGGCGCGG
AACGCACACGACATCGACTACGACGAGCGCAACCCGTTCAAGGTGTGCGC
GGCGACGCACAAGCCCATCTACGTCAGCTCGCCGTCCGTGTCGTGCCCGT
ACTGTGGCGCCGCGCACCTCCCAGAGTTCAAGGGGAAGCTGTGCCGTCTG
TGCCAGCTGTCTGTCGTTGGCGTGGAAACGCTGGGATTGGTATGTTTTGC
GGACGACCGGAAGTGA
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