mRNA_M-pyrifera_M_contig105704.1227.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_M-pyrifera_M_contig105704.1227.1
Unique Name	mRNA_M-pyrifera_M_contig105704.1227.1
Type	mRNA
Organism	Macrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))

Homology

[Close]

BLAST of mRNA_M-pyrifera_M_contig105704.1227.1 vs. uniprot
Match: A0A518A1J2_9PLAN (Uncharacterized protein n=9 Tax=Gimesia TaxID=1649453 RepID=A0A518A1J2_9PLAN)

HSP 1 Score: 315 bits (808), Expect = 4.250e-106
Identity = 142/157 (90.45%), Postives = 153/157 (97.45%), Query Frame = 1

Query:    1 MSGIVGHTMYAILGGKAAAQKQLPMASLIHRHYSSYLAGAYMGCDIQIMPEAICVDTGEEVGFGTAPLERSPLTGGEVKPWTLKFQGKEYRPREIHQLFYGRAHVVFGWVPAERKFTVPWDHLPDYAARVFQDARDLYGPGDRQLAYLFGWLAHIVG 471
            MSGIVGHTMYAILGGKAA +++LP+A LIHRHY+SYLAGAYMGCDIQIMPEAICVDTGEEVGFGTAPLERSPLTGG VKPWTLKF+GKEYRPR+IH LFYGR+HVVFGWVPAERK+TVPWDHLPDYAARVFQDARDLYGPG+R+LAYLFGWLAHIVG
Sbjct:    1 MSGIVGHTMYAILGGKAAVEQKLPIAPLIHRHYASYLAGAYMGCDIQIMPEAICVDTGEEVGFGTAPLERSPLTGGAVKPWTLKFEGKEYRPRDIHHLFYGRSHVVFGWVPAERKYTVPWDHLPDYAARVFQDARDLYGPGERKLAYLFGWLAHIVG 157

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BLAST of mRNA_M-pyrifera_M_contig105704.1227.1 vs. uniprot
Match: A0A518I793_9PLAN (Uncharacterized protein n=2 Tax=Gimesia TaxID=1649453 RepID=A0A518I793_9PLAN)

HSP 1 Score: 296 bits (758), Expect = 1.700e-98
Identity = 133/157 (84.71%), Postives = 148/157 (94.27%), Query Frame = 1

Query:    1 MSGIVGHTMYAILGGKAAAQKQLPMASLIHRHYSSYLAGAYMGCDIQIMPEAICVDTGEEVGFGTAPLERSPLTGGEVKPWTLKFQGKEYRPREIHQLFYGRAHVVFGWVPAERKFTVPWDHLPDYAARVFQDARDLYGPGDRQLAYLFGWLAHIVG 471
            MSGI+GHTMYAIL GKAAAQK+LP+ S+I++HY+SYLAGAYMGCDIQIMPEA+CVDTG+EVGFGTAPLERSPLTGGEVKPW+L+F  + YRPREIH LFYGRAHVVFGW PAERK TVPWDHLPDYAA VFQDA+DLYGPG+R+LAYLFGWLAHIVG
Sbjct:    1 MSGIIGHTMYAILAGKAAAQKKLPIVSVINQHYASYLAGAYMGCDIQIMPEAVCVDTGQEVGFGTAPLERSPLTGGEVKPWSLQFGDRAYRPREIHHLFYGRAHVVFGWQPAERKNTVPWDHLPDYAAMVFQDAKDLYGPGERKLAYLFGWLAHIVG 157

[Close]

BLAST of mRNA_M-pyrifera_M_contig105704.1227.1 vs. uniprot
Match: A0A517W2G3_9PLAN (Uncharacterized protein n=2 Tax=Gimesia aquarii TaxID=2527964 RepID=A0A517W2G3_9PLAN)

HSP 1 Score: 288 bits (737), Expect = 2.870e-95
Identity = 127/157 (80.89%), Postives = 146/157 (92.99%), Query Frame = 1

Query:    1 MSGIVGHTMYAILGGKAAAQKQLPMASLIHRHYSSYLAGAYMGCDIQIMPEAICVDTGEEVGFGTAPLERSPLTGGEVKPWTLKFQGKEYRPREIHQLFYGRAHVVFGWVPAERKFTVPWDHLPDYAARVFQDARDLYGPGDRQLAYLFGWLAHIVG 471
            MSGI+GHTMYAIL GKAA QK+LP+  +I+R+Y+SYLAG+Y+GCDIQIMPEA+CVDTG+EVGFGTAPL +SPLTGGEVKPW LKF+ +EYRPREIH+ FYGRAH+VFGW PAERK TVPWDHLPDYAA VFQDA+DLYGPG+R+LAYLFGWLAHIVG
Sbjct:    1 MSGIIGHTMYAILAGKAATQKKLPIVPVIYRNYASYLAGSYLGCDIQIMPEAVCVDTGQEVGFGTAPLNQSPLTGGEVKPWLLKFETREYRPREIHRQFYGRAHLVFGWTPAERKNTVPWDHLPDYAAMVFQDAKDLYGPGERKLAYLFGWLAHIVG 157

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BLAST of mRNA_M-pyrifera_M_contig105704.1227.1 vs. uniprot
Match: A0A2E8CYW7_9PLAN (Uncharacterized protein n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A2E8CYW7_9PLAN)

HSP 1 Score: 262 bits (670), Expect = 3.730e-85
Identity = 113/157 (71.97%), Postives = 137/157 (87.26%), Query Frame = 1

Query:    1 MSGIVGHTMYAILGGKAAAQKQLPMASLIHRHYSSYLAGAYMGCDIQIMPEAICVDTGEEVGFGTAPLERSPLTGGEVKPWTLKFQGKEYRPREIHQLFYGRAHVVFGWVPAERKFTVPWDHLPDYAARVFQDARDLYGPGDRQLAYLFGWLAHIVG 471
            MSGI+GH+MYAIL GKAAA+++LP+ SLIH HY+SYL GAY+GCD+Q MPEA+CVDTGEEVG+GTAPL++SPLTGG V+PW+L F GK++RPREIH+ FYGR+H+VFGW  +ER  +VPWDHL DY A V QDA +LYGPG RQLAYL GW+AHIVG
Sbjct:    1 MSGIIGHSMYAILAGKAAAERKLPITSLIHWHYASYLCGAYLGCDVQTMPEAVCVDTGEEVGYGTAPLDKSPLTGGAVRPWSLDFDGKQHRPREIHRTFYGRSHLVFGWNASERTHSVPWDHLADYCAAVVQDAFELYGPGQRQLAYLLGWIAHIVG 157

[Close]

BLAST of mRNA_M-pyrifera_M_contig105704.1227.1 vs. uniprot
Match: A0A2E7D847_9PLAN (Uncharacterized protein n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A2E7D847_9PLAN)

HSP 1 Score: 254 bits (649), Expect = 5.630e-82
Identity = 110/157 (70.06%), Postives = 134/157 (85.35%), Query Frame = 1

Query:    1 MSGIVGHTMYAILGGKAAAQKQLPMASLIHRHYSSYLAGAYMGCDIQIMPEAICVDTGEEVGFGTAPLERSPLTGGEVKPWTLKFQGKEYRPREIHQLFYGRAHVVFGWVPAERKFTVPWDHLPDYAARVFQDARDLYGPGDRQLAYLFGWLAHIVG 471
            MSGI+GH+MYAILGG AA +++LP+  +I+R+Y+SYL GAY+GCD+Q MPEA CVDTG++VG+GTA L +SPLTGGEV PW+LKF+ + YRPREIH+ FYGRAHVVFGW   ER+ TVPWDHL DY A V QDA D YGPG+R+LAYLFGW+AHIVG
Sbjct:    1 MSGIIGHSMYAILGGIAAEERKLPVCGIINRNYASYLCGAYLGCDVQTMPEATCVDTGKDVGYGTATLTKSPLTGGEVMPWSLKFEDQSYRPREIHRTFYGRAHVVFGWATQERQHTVPWDHLADYCAAVVQDAVDFYGPGERKLAYLFGWMAHIVG 157

[Close]

BLAST of mRNA_M-pyrifera_M_contig105704.1227.1 vs. uniprot
Match: A0A2D6SXH2_9PLAN (Uncharacterized protein n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A2D6SXH2_9PLAN)

HSP 1 Score: 243 bits (620), Expect = 1.290e-77
Identity = 105/157 (66.88%), Postives = 130/157 (82.80%), Query Frame = 1

Query:    1 MSGIVGHTMYAILGGKAAAQKQLPMASLIHRHYSSYLAGAYMGCDIQIMPEAICVDTGEEVGFGTAPLERSPLTGGEVKPWTLKFQGKEYRPREIHQLFYGRAHVVFGWVPAERKFTVPWDHLPDYAARVFQDARDLYGPGDRQLAYLFGWLAHIVG 471
            MSG+VGH MY +LG KAA Q++LP+A +I RH++SYL G+Y+GCDIQ MPEAICV+TG+EVG+GTA LE+SPLTGG VKPW L+F G++Y PREIH LFYGR+H+VFGW  A+ + TVPWDHL DY A    DA +L+GPG+R+LAYLFGW  HIVG
Sbjct:    1 MSGLVGHVMYGVLGAKAARQRKLPVAGIIERHWASYLCGSYLGCDIQTMPEAICVETGKEVGYGTAKLEKSPLTGGPVKPWHLEFGGRKYTPREIHTLFYGRSHLVFGWKGADTQHTVPWDHLDDYVAAAVGDAIELFGPGERKLAYLFGWACHIVG 157

[Close]

BLAST of mRNA_M-pyrifera_M_contig105704.1227.1 vs. uniprot
Match: A0A7C5M8L3_9PLAN (Uncharacterized protein n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A7C5M8L3_9PLAN)

HSP 1 Score: 243 bits (619), Expect = 3.600e-77
Identity = 107/157 (68.15%), Postives = 126/157 (80.25%), Query Frame = 1

Query:    1 MSGIVGHTMYAILGGKAAAQKQLPMASLIHRHYSSYLAGAYMGCDIQIMPEAICVDTGEEVGFGTAPLERSPLTGGEVKPWTLKFQGKEYRPREIHQLFYGRAHVVFGWVPAERKFTVPWDHLPDYAARVFQDARDLYGPGDRQLAYLFGWLAHIVG 471
            MSG+VGH MYAILG KAA  + + +  ++ RH  SYL GAY+GCDIQ +PEAIC+DTGE VG+GT PL+RSPLTGG V+PWTL+  G+ YRPR+IH+L YGRAH+VFGW  AER  TVPW+HL DYAA VF DA  LY PG+RQLAYLFGWL HIVG
Sbjct:   22 MSGVVGHLMYAILGAKAARARGVRVDLIVDRHQDSYLCGAYLGCDIQTLPEAICIDTGEPVGYGTVPLDRSPLTGGPVRPWTLEHAGRSYRPRDIHRLLYGRAHLVFGWAGAERVHTVPWEHLADYAADVFHDALHLYAPGERQLAYLFGWLTHIVG 178

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BLAST of mRNA_M-pyrifera_M_contig105704.1227.1 vs. uniprot
Match: A0A2E0AYB6_9BACT (Uncharacterized protein n=2 Tax=Planctomycetia TaxID=203683 RepID=A0A2E0AYB6_9BACT)

HSP 1 Score: 241 bits (616), Expect = 6.040e-77
Identity = 103/157 (65.61%), Postives = 128/157 (81.53%), Query Frame = 1

Query:    1 MSGIVGHTMYAILGGKAAAQKQLPMASLIHRHYSSYLAGAYMGCDIQIMPEAICVDTGEEVGFGTAPLERSPLTGGEVKPWTLKFQGKEYRPREIHQLFYGRAHVVFGWVPAERKFTVPWDHLPDYAARVFQDARDLYGPGDRQLAYLFGWLAHIVG 471
            MSGI+GHTMYAIL GKAA  ++LP+  ++HRHY+SYL GAY+GCD+Q MPEA+CVD+G EVG+GT  L++SPLTGGEV PW+L+   K YRPREIH+ FYGRAH+VFGW   +R  TVPWDHL DY A V +DA + +G G+R++AYL GWLAHIVG
Sbjct:    1 MSGIIGHTMYAILAGKAAEHRRLPIVPMLHRHYASYLCGAYLGCDVQTMPEAVCVDSGNEVGYGTVDLKQSPLTGGEVTPWSLQLNDKRYRPREIHRTFYGRAHLVFGWNGVDRAHTVPWDHLADYVAAVCEDAMEHFGVGERKMAYLMGWLAHIVG 157

[Close]

BLAST of mRNA_M-pyrifera_M_contig105704.1227.1 vs. uniprot
Match: A0A7Z9IAX5_9PLAN (Uncharacterized protein n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A7Z9IAX5_9PLAN)

HSP 1 Score: 227 bits (578), Expect = 3.050e-71
Identity = 98/157 (62.42%), Postives = 123/157 (78.34%), Query Frame = 1

Query:    1 MSGIVGHTMYAILGGKAAAQKQLPMASLIHRHYSSYLAGAYMGCDIQIMPEAICVDTGEEVGFGTAPLERSPLTGGEVKPWTLKFQGKEYRPREIHQLFYGRAHVVFGWVPAERKFTVPWDHLPDYAARVFQDARDLYGPGDRQLAYLFGWLAHIVG 471
            MSG+VGHT+YAIL G+   +++LP+  LIHRH+ S+L+GAY+G DIQ +PEA+CVDTG+ VG+GT  LE+SPLTGG V PW L  QG EYRPREI  LFYGR+H++FGW   + K T+PWDHL DY A V +D    YG G+R+LAY+FGWLAHIVG
Sbjct:    1 MSGVVGHTLYAILAGRKTIERRLPVGGLIHRHFDSFLSGAYLGSDIQTLPEAVCVDTGKSVGYGTVALEKSPLTGGPVVPWKLVHQGAEYRPREIADLFYGRSHLIFGWKGDQTKHTLPWDHLHDYVAVVCEDVIQRYGKGERKLAYIFGWLAHIVG 157

[Close]

BLAST of mRNA_M-pyrifera_M_contig105704.1227.1 vs. uniprot
Match: A0A2E5ERB8_9BACT (Uncharacterized protein n=1 Tax=Verrucomicrobiales bacterium TaxID=2026801 RepID=A0A2E5ERB8_9BACT)

HSP 1 Score: 221 bits (562), Expect = 5.000e-69
Identity = 96/157 (61.15%), Postives = 124/157 (78.98%), Query Frame = 1

Query:    1 MSGIVGHTMYAILGGKAAAQKQLPMASLIHRHYSSYLAGAYMGCDIQIMPEAICVDTGEEVGFGTAPLERSPLTGGEVKPWTLKFQGKEYRPREIHQLFYGRAHVVFGWVPAERKFTVPWDHLPDYAARVFQDARDLYGPGDRQLAYLFGWLAHIVG 471
            MSG++GHTMYAIL   +A +++LP+ +LI R+  SY  GAY+GCD+Q MPEAICVDTG EVG+GTA +E+SP+TGG ++ W+L+  GK YRPREIH+LFYGRAH+VFGW   +R+ TVPWDHL DY A V +D R ++   +R LAYL GW+AHIVG
Sbjct:    1 MSGVIGHTMYAILAVDSARKRKLPIVALIERNQPSYHCGAYLGCDVQTMPEAICVDTGSEVGYGTASMEKSPITGGVIRLWSLEHGGKGYRPREIHRLFYGRAHLVFGWRSEDREHTVPWDHLADYCAAVVKDCRRMHPGNERALAYLLGWIAHIVG 157

The following BLAST results are available for this feature:

BLAST of mRNA_M-pyrifera_M_contig105704.1227.1 vs. uniprot

BLAST of mRNA_M-pyrifera_M_contig105704.1227.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A518A1J2_9PLAN	4.250e-106	90.45	Uncharacterized protein n=9 Tax=Gimesia TaxID=1649...	[more]
A0A518I793_9PLAN	1.700e-98	84.71	Uncharacterized protein n=2 Tax=Gimesia TaxID=1649...	[more]
A0A517W2G3_9PLAN	2.870e-95	80.89	Uncharacterized protein n=2 Tax=Gimesia aquarii Ta...	[more]
A0A2E8CYW7_9PLAN	3.730e-85	71.97	Uncharacterized protein n=1 Tax=Planctomycetaceae ...	[more]
A0A2E7D847_9PLAN	5.630e-82	70.06	Uncharacterized protein n=1 Tax=Planctomycetaceae ...	[more]
A0A2D6SXH2_9PLAN	1.290e-77	66.88	Uncharacterized protein n=1 Tax=Planctomycetaceae ...	[more]
A0A7C5M8L3_9PLAN	3.600e-77	68.15	Uncharacterized protein n=1 Tax=Planctomycetaceae ...	[more]
A0A2E0AYB6_9BACT	6.040e-77	65.61	Uncharacterized protein n=2 Tax=Planctomycetia Tax...	[more]
A0A7Z9IAX5_9PLAN	3.050e-71	62.42	Uncharacterized protein n=1 Tax=Planctomycetaceae ...	[more]
A0A2E5ERB8_9BACT	5.000e-69	61.15	Uncharacterized protein n=1 Tax=Verrucomicrobiales...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
M-pyrifera_M_contig105704	contig	M-pyrifera_M_contig105704:1..471 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90	2022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male	2021-02-24

Properties


Property Name	Value
Hectar predicted targeting category	other localisation
Exons	1
Model size	471
Cds size	471
Stop	0
Start	1

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622815566.0195749-CDS-M-pyrifera_M_contig105704:0..471	1622815566.0195749-CDS-M-pyrifera_M_contig105704:0..471	Macrocystis pyrifera P11B4 male	CDS	M-pyrifera_M_contig105704 1..471 -
1692277466.456549-CDS-M-pyrifera_M_contig105704:0..471	1692277466.456549-CDS-M-pyrifera_M_contig105704:0..471	Macrocystis pyrifera P11B4 male	CDS	M-pyrifera_M_contig105704 1..471 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_M-pyrifera_M_contig105704.1227.1	prot_M-pyrifera_M_contig105704.1227.1	Macrocystis pyrifera P11B4 male	polypeptide	M-pyrifera_M_contig105704 1..471 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at M-pyrifera_M_contig105704:1..471-
coding sequence from alignment at M-pyrifera_M_contig105704:1..471-

protein sequence of mRNA_M-pyrifera_M_contig105704.1227.1

>prot_M-pyrifera_M_contig105704.1227.1 ID=prot_M-pyrifera_M_contig105704.1227.1|Name=mRNA_M-pyrifera_M_contig105704.1227.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=157bp
MSGIVGHTMYAILGGKAAAQKQLPMASLIHRHYSSYLAGAYMGCDIQIMP
EAICVDTGEEVGFGTAPLERSPLTGGEVKPWTLKFQGKEYRPREIHQLFY
GRAHVVFGWVPAERKFTVPWDHLPDYAARVFQDARDLYGPGDRQLAYLFG
WLAHIVG

mRNA from alignment at M-pyrifera_M_contig105704:1..471-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_M-pyrifera_M_contig105704.1227.1 ID=mRNA_M-pyrifera_M_contig105704.1227.1|Name=mRNA_M-pyrifera_M_contig105704.1227.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=471bp|location=Sequence derived from alignment at M-pyrifera_M_contig105704:1..471- (Macrocystis pyrifera P11B4 male)
ATGAGTGGAATTGTCGGTCATACGATGTACGCCATCCTGGGAGGGAAGGC
GGCAGCTCAGAAGCAGCTGCCGATGGCCTCTCTGATTCATCGGCACTATT
CAAGTTACCTGGCCGGTGCCTATATGGGTTGCGACATTCAGATCATGCCG
GAAGCGATCTGTGTGGATACGGGGGAAGAGGTCGGCTTCGGGACGGCTCC
CCTGGAACGCAGTCCGTTGACCGGCGGTGAGGTTAAGCCGTGGACGTTGA
AGTTTCAGGGGAAGGAATATCGTCCGCGGGAAATCCATCAGCTGTTCTAT
GGTCGCGCGCATGTGGTTTTCGGCTGGGTGCCTGCTGAGCGGAAATTTAC
GGTGCCCTGGGATCATCTCCCTGATTATGCAGCCCGTGTGTTTCAGGATG
CGCGGGATCTCTATGGTCCGGGGGATCGCCAGCTGGCGTACCTGTTTGGC
TGGCTGGCGCACATCGTGGGA

Coding sequence (CDS) from alignment at M-pyrifera_M_contig105704:1..471-

>mRNA_M-pyrifera_M_contig105704.1227.1 ID=mRNA_M-pyrifera_M_contig105704.1227.1|Name=mRNA_M-pyrifera_M_contig105704.1227.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=942bp|location=Sequence derived from alignment at M-pyrifera_M_contig105704:1..471- (Macrocystis pyrifera P11B4 male)
ATGAGTGGAATTGTCGGTCATACGATGTACGCCATCCTGGGAGGGAAGGC
GGCAGCTCAGAAGCAGCTGCCGATGGCCTCTCTGATTCATCGGCACTATT
CAAGTTACCTGGCCGGTGCCTATATGGGTTGCGACATTCAGATCATGCCG
GAAGCGATCTGTGTGGATACGGGGGAAGAGGTCGGCTTCGGGACGGCTCC
CCTGGAACGCAGTCCGTTGACCGGCGGTGAGGTTAAGCCGTGGACGTTGA
AGTTTCAGGGGAAGGAATATCGTCCGCGGGAAATCCATCAGCTGTTCTAT
GGTCGCGCGCATGTGGTTTTCGGCTGGGTGCCTGCTGAGCGGAAATTTAC
GGTGCCCTGGGATCATCTCCCTGATTATGCAGCCCGTGTGTTTCAGGATG
CGCGGGATCTCTATGGTCCGGGGGATCGCCAGCTGGCGTACCTGTTTGGC
TGGCTGGCGCACATCGTGGGAATGAGTGGAATTGTCGGTCATACGATGTA
CGCCATCCTGGGAGGGAAGGCGGCAGCTCAGAAGCAGCTGCCGATGGCCT
CTCTGATTCATCGGCACTATTCAAGTTACCTGGCCGGTGCCTATATGGGT
TGCGACATTCAGATCATGCCGGAAGCGATCTGTGTGGATACGGGGGAAGA
GGTCGGCTTCGGGACGGCTCCCCTGGAACGCAGTCCGTTGACCGGCGGTG
AGGTTAAGCCGTGGACGTTGAAGTTTCAGGGGAAGGAATATCGTCCGCGG
GAAATCCATCAGCTGTTCTATGGTCGCGCGCATGTGGTTTTCGGCTGGGT
GCCTGCTGAGCGGAAATTTACGGTGCCCTGGGATCATCTCCCTGATTATG
CAGCCCGTGTGTTTCAGGATGCGCGGGATCTCTATGGTCCGGGGGATCGC
CAGCTGGCGTACCTGTTTGGCTGGCTGGCGCACATCGTGGGA