mRNA_M-pyrifera_M_contig105700.1225.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig105700.1225.1
Unique NamemRNA_M-pyrifera_M_contig105700.1225.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig105700.1225.1 vs. uniprot
Match: A0A7S1CIM6_9STRA (Coatomer subunit delta n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CIM6_9STRA)

HSP 1 Score: 99.0 bits (245), Expect = 1.160e-21
Identity = 54/129 (41.86%), Postives = 69/129 (53.49%), Query Frame = 1
Query:  175 AVADHVSVESEELLRVKMERDGSVKAMQVNGKLSLLARHVDGSHAQLQLRLGANPGWQMQPHPQLSKPALADEATLRLKDPSRSFPVGERAGLLRWKLPTGADGAEAPLALVCWPEEVGDGNVVMNIEY 561
            A    V   SEE + V M RDG +  M+V G L L   + D S  ++ L  G    ++ Q HP +SKP    E  L LKD SR FP G   G+LRW+  T  D  + P+   CWPEEVG G + +NIEY
Sbjct:   16 AAGTDVECRSEERITVNMTRDGGLHGMEVKGTLQLQVHNPDASRVRVLLDRGDLTDFKFQSHPNISKPKWNAEGVLELKDASRGFPQGADVGVLRWRSNT-RDATKVPIVFNCWPEEVGGGEINVNIEY 143          
BLAST of mRNA_M-pyrifera_M_contig105700.1225.1 vs. uniprot
Match: A0A7R9UGB9_9STRA (Coatomer subunit delta n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UGB9_9STRA)

HSP 1 Score: 100 bits (249), Expect = 4.980e-21
Identity = 51/124 (41.13%), Postives = 75/124 (60.48%), Query Frame = 1
Query:  190 VSVESEELLRVKMERDGSVKAMQVNGKLSLLARHVDGSHAQLQLRLGANPGWQMQPHPQLSKPALADEATLRLKDPSRSFPVGERAGLLRWKLPTGADGAEAPLALVCWPEEVGDGNVVMNIEY 561
            +++  EE L V++ R+G V+AM+V G LSL A   + +   +QL+L   PG   Q HP+++K    +   L LKD  + FPVG   G+LRW   T  + A  PL++ CWPE+ GDGN  ++IEY
Sbjct:  293 LTLSVEEKLSVRLSREGVVEAMEVKGALSLTANVNEAARCGVQLQLTGQPGMTFQTHPKIAKGPFDESQMLTLKDQRKGFPVGRGVGVLRWSFATSEESA-LPLSINCWPEDTGDGNFTVSIEY 415          
BLAST of mRNA_M-pyrifera_M_contig105700.1225.1 vs. uniprot
Match: A0A1Y2HZC7_9FUNG (Coatomer subunit delta n=1 Tax=Catenaria anguillulae PL171 TaxID=765915 RepID=A0A1Y2HZC7_9FUNG)

HSP 1 Score: 98.6 bits (244), Expect = 2.480e-20
Identity = 56/148 (37.84%), Postives = 86/148 (58.11%), Query Frame = 1
Query:  190 VSVESEELLRVKMERDGSVKAMQVNGKLSLLARHVDGSHAQLQLRLGANPGWQMQPHPQLSKPALADEATLRLKDPSRSFPVGERAGLLRWKLPTGADGAEAPLALVCWPEEVGDGNVVMNIEYAFAEPPERSPDATPFSLHNVVVSV 633
            V V  +E + V + RDG ++ M+V G LS+       + A++Q++L AN   Q + HP + K A  D +TL L+D S+SFPVG+ +G+L+W+L    D +  PL++ CWP    DG+  +NIEY           AT  +L NVV++V
Sbjct:  314 VHVILDERVVVSVNRDGGLQQMEVKGDLSVHVTTPAAAQARVQVQLPANSAAQFKTHPNMDKKAWTDSSTLTLRDASKSFPVGQPSGVLKWRL-VSKDESAVPLSINCWPNPTNDGHCEVNIEYELL--------ATHMTLRNVVLAV 452          
BLAST of mRNA_M-pyrifera_M_contig105700.1225.1 vs. uniprot
Match: A0A0L0T2J1_ALLM3 (Coatomer subunit delta n=1 Tax=Allomyces macrogynus (strain ATCC 38327) TaxID=578462 RepID=A0A0L0T2J1_ALLM3)

HSP 1 Score: 90.1 bits (222), Expect = 2.180e-17
Identity = 50/138 (36.23%), Postives = 78/138 (56.52%), Query Frame = 1
Query:  190 VSVESEELLRVKMERDGSVKAMQVNGKLSLLARHVDGSHAQLQLRLGAN-PGWQMQPHPQLSKPALADEATLRLKDPSRSFPVGERAGLLRWKLPTGADGAEAPLALVCWPEEVGDGNVVMNIEYAFAEPPERSPDAT 600
            V V  +E +   + RDG ++ ++V G L +     D +HA +Q+ L ++ PG Q + HP + K   +  +TL LKD S++FPVG+  G+L+W+    +D A+ PLA+ CWP    DG   +NIEY    P  R  + T
Sbjct:  300 VHVTLDERVTCIVNRDGGLQQLEVKGDLYVHVTSPDAAHAHVQVTLPSDLPGAQFKTHPNMDKKLWSASSTLALKDASKTFPVGQPTGVLKWRF-VSSDEAQVPLAINCWPNPSADGTCDVNIEYELLVPHLRLTNVT 436          
BLAST of mRNA_M-pyrifera_M_contig105700.1225.1 vs. uniprot
Match: A0A4Q1BVM2_TREME (Coatomer subunit delta n=2 Tax=Tremella mesenterica TaxID=5217 RepID=A0A4Q1BVM2_TREME)

HSP 1 Score: 89.0 bits (219), Expect = 5.090e-17
Identity = 53/152 (34.87%), Postives = 88/152 (57.89%), Query Frame = 1
Query:  184 DHVSVESEELLRVKMERDGSVKAMQVNGKLSLLARHVDGSHAQLQLRLGANPGWQMQ--PHPQLSKPALADEATLRLKDPSRSFPVGERAGLLRWKLPTGADGAEAPLALVCWPEEVGDGNVVMNIEYAFAEPPERSPDATPFSLHNVVVSV 633
            D V V  +E L + + RDG V++ ++ G L L  R  D + ++L+L L      ++Q   HP ++K + + E  + LKDPSRSFPVG+  G+LRW++ T  D +  PL++ CWP+  GDG   + +EY          +++  +L NV++S+
Sbjct:  259 DSVHVTIKEQLAITLLRDGGVQSFELKGDLDL--RITDAALSKLRLTLAPKDYTELQFKQHPNVAKFSPSGEKIIALKDPSRSFPVGQGLGVLRWRM-TAKDESNVPLSITCWPQPRGDGKSDIAVEYEL--------ESSHLTLRNVLISI 399          
BLAST of mRNA_M-pyrifera_M_contig105700.1225.1 vs. uniprot
Match: UPI00193AA37D (coatomer subunit delta-like n=1 Tax=Styela clava TaxID=7725 RepID=UPI00193AA37D)

HSP 1 Score: 87.4 bits (215), Expect = 1.790e-16
Identity = 49/130 (37.69%), Postives = 71/130 (54.62%), Query Frame = 1
Query:  172 AAVADHVSVESEELLRVKMERDGSVKAMQVNGKLSLLARHVDGSHAQLQLRLGANPGWQMQPHPQLSKPALADEATLRLKDPSRSFPVGERAGLLRWKLPTGADGAEAPLALVCWPEEVGDGNVVMNIEY 561
            AA+ + V V  EE L V  +RDG ++ MQ+ G  +L           L +    + G Q+Q HP + K A      + LK+ S+SFP+ +  G+L+W+L T  D +  PLA+ CWP E GDG   +NIEY
Sbjct:  261 AALIESVHVRVEERLNVSADRDGGLQQMQLQGLCTLHITDEKYGFILLNIENNDDTGCQLQTHPNVDKKAFQSNGVIGLKNSSKSFPMKQDVGVLKWRLQT-TDESLMPLAINCWPNESGDGGCDVNIEY 389          
BLAST of mRNA_M-pyrifera_M_contig105700.1225.1 vs. uniprot
Match: A0A0D0C6X4_9AGAR (Coatomer subunit delta n=1 Tax=Gymnopus luxurians FD-317 M1 TaxID=944289 RepID=A0A0D0C6X4_9AGAR)

HSP 1 Score: 85.1 bits (209), Expect = 1.180e-15
Identity = 44/130 (33.85%), Postives = 76/130 (58.46%), Query Frame = 1
Query:  181 ADHVSVESEELLRVKMERDGSVKAMQVNGKLSLLARHVDGSHAQLQLRLGANP---GWQMQPHPQLSKPALADEATLRLKDPSRSFPVGERAGLLRWKLPTGADGAEAPLALVCWPEEVGDGNVVMNIEY 561
            A+ + +  +E + + + RDG V++M++ G ++LL    D +H ++ L   ++      Q + HP ++K +   E  + LKDPSRSFPVG+   +L+W+  TG D +  PL++ CWP    DG   ++IEY
Sbjct:  289 AESIHIAVKEQIALSLLRDGGVQSMELKGDMNLLITDSDLAHVKIHLGQSSSDFGNNLQFKQHPNVAKFSPGKERVIALKDPSRSFPVGQSLAVLKWRY-TGTDESNVPLSINCWPTPSNDGTCEVSIEY 417          
BLAST of mRNA_M-pyrifera_M_contig105700.1225.1 vs. uniprot
Match: A0A5M6C188_9TREE (Coatomer subunit delta n=1 Tax=Kwoniella shandongensis TaxID=1734106 RepID=A0A5M6C188_9TREE)

HSP 1 Score: 84.3 bits (207), Expect = 2.160e-15
Identity = 57/161 (35.40%), Postives = 89/161 (55.28%), Query Frame = 1
Query:  172 AAVADHVSVES-----EELLRVKMERDGSVKAMQVNGKLSLLARHVDGSHAQLQLRLGANPGWQMQ--PHPQLSKPALADEATLRLKDPSRSFPVGERAGLLRWKLPTGADGAEAPLALVCWPEEVGDGNVVMNIEYAFAEPPERSPDATPFSLHNVVVSV 633
            A V D V  ES     +E L V + RDG V++ ++ G L L  R  D + ++L+L L      ++Q   HP ++K   + +  + LKD SRSFPVG+  G+LRW++ T  D +  PL++ CWP+  GDG   + +EY          +A+  +L NVV+S+
Sbjct:  281 ADVLDKVEQESIHVTIKEQLAVTLLRDGGVQSFELKGDLDL--RITDPALSKLRLTLAQKDYSELQFKQHPNVAKFTPSGDKIIALKDASRSFPVGQGLGVLRWRM-TSKDESNVPLSITCWPQPRGDGTSDVAVEYEL--------EASHLTLRNVVISI 430          
BLAST of mRNA_M-pyrifera_M_contig105700.1225.1 vs. uniprot
Match: A0A1R1YAF1_9FUNG (Coatomer subunit delta n=3 Tax=Smittium culicis TaxID=133412 RepID=A0A1R1YAF1_9FUNG)

HSP 1 Score: 84.3 bits (207), Expect = 2.190e-15
Identity = 48/149 (32.21%), Postives = 77/149 (51.68%), Query Frame = 1
Query:  187 HVSVESEELLRVKMERDGSVKAMQVNGKLSLLARHVDGSHAQLQLRLGANPGWQMQPHPQLSKPALADEATLRLKDPSRSFPVGERAGLLRWKLPTGADGAEAPLALVCWPEEVGDGNVVMNIEYAFAEPPERSPDATPFSLHNVVVSV 633
            H++VE  E +   + RDG ++ M+V G LSL+    D S   +++    +   Q + HP + K   ++   L LK+ SR+FP+ +  G+L+W+   G      PL + CWP   GDGN  +NIEY          +     LH+VV+S+
Sbjct:  303 HITVE--ENISAIVNRDGGLELMEVKGDLSLILSEEDKSTTSIRVLCVQDDSTQYKTHPNIDKKQFSESGLLTLKNQSRTFPLNQPVGVLKWRY-VGQSEDSVPLNINCWPSPTGDGNCEVNIEYEL--------NCNHMDLHDVVISI 440          
BLAST of mRNA_M-pyrifera_M_contig105700.1225.1 vs. uniprot
Match: A0A1R0GR69_9FUNG (Coatomer subunit delta n=1 Tax=Smittium mucronatum TaxID=133383 RepID=A0A1R0GR69_9FUNG)

HSP 1 Score: 84.0 bits (206), Expect = 2.780e-15
Identity = 48/149 (32.21%), Postives = 77/149 (51.68%), Query Frame = 1
Query:  187 HVSVESEELLRVKMERDGSVKAMQVNGKLSLLARHVDGSHAQLQLRLGANPGWQMQPHPQLSKPALADEATLRLKDPSRSFPVGERAGLLRWKLPTGADGAEAPLALVCWPEEVGDGNVVMNIEYAFAEPPERSPDATPFSLHNVVVSV 633
            H+S+E  E +   + RDG ++ M+V G LSL+    D S   +++    +   Q + HP + K    +   L LK+PSR+FP+ +  G+L+W+   G      PL + CWP   GDGN  ++IEY          +     LH+VV+S+
Sbjct:  253 HISIE--EHISAIVNRDGGLEMMEVKGDLSLVLSEEDKSGTSVRVLCLHDDSTQYKTHPNIDKRQFNENGLLALKNPSRTFPINQPVGVLKWRY-VGQSEDSVPLNINCWPSPTGDGNCEVSIEYEL--------NVAHMDLHDVVISI 390          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig105700.1225.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S1CIM6_9STRA1.160e-2141.86Coatomer subunit delta n=1 Tax=Bicosoecida sp. CB-... [more]
A0A7R9UGB9_9STRA4.980e-2141.13Coatomer subunit delta n=1 Tax=Pinguiococcus pyren... [more]
A0A1Y2HZC7_9FUNG2.480e-2037.84Coatomer subunit delta n=1 Tax=Catenaria anguillul... [more]
A0A0L0T2J1_ALLM32.180e-1736.23Coatomer subunit delta n=1 Tax=Allomyces macrogynu... [more]
A0A4Q1BVM2_TREME5.090e-1734.87Coatomer subunit delta n=2 Tax=Tremella mesenteric... [more]
UPI00193AA37D1.790e-1637.69coatomer subunit delta-like n=1 Tax=Styela clava T... [more]
A0A0D0C6X4_9AGAR1.180e-1533.85Coatomer subunit delta n=1 Tax=Gymnopus luxurians ... [more]
A0A5M6C188_9TREE2.160e-1535.40Coatomer subunit delta n=1 Tax=Kwoniella shandonge... [more]
A0A1R1YAF1_9FUNG2.190e-1532.21Coatomer subunit delta n=3 Tax=Smittium culicis Ta... [more]
A0A1R0GR69_9FUNG2.780e-1532.21Coatomer subunit delta n=1 Tax=Smittium mucronatum... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig105700contigM-pyrifera_M_contig105700:2..634 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score100.5
Seed ortholog evalue9.7e-19
Seed eggNOG ortholog102107.XP_008227806.1
KEGG koko:K20471
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005798,GO:0005829,GO:0005911,GO:0009506,GO:0016020,GO:0030054,GO:0031410,GO:0031982,GO:0043226,GO:0043227,GO:0043229,GO:0044424,GO:0044444,GO:0044464,GO:0055044,GO:0097708
EggNOG free text desc.The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non- clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins
EggNOG OGs37NHA@33090,3GFBK@35493,4JFK9@91835,KOG2635@1,KOG2635@2759
Ec32 ortholog descriptionCoatomer protein complex,delta sub-unit
Ec32 orthologEc-01_011270.1
COG Functional cat.U
Best tax levelfabids
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Exons1
Model size633
Cds size633
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815565.944666-CDS-M-pyrifera_M_contig105700:1..6341622815565.944666-CDS-M-pyrifera_M_contig105700:1..634Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig105700 2..634 -
1692277466.434489-CDS-M-pyrifera_M_contig105700:1..6341692277466.434489-CDS-M-pyrifera_M_contig105700:1..634Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig105700 2..634 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig105700.1225.1prot_M-pyrifera_M_contig105700.1225.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig105700 2..634 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig105700.1225.1

>prot_M-pyrifera_M_contig105700.1225.1 ID=prot_M-pyrifera_M_contig105700.1225.1|Name=mRNA_M-pyrifera_M_contig105700.1225.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=211bp
GGGGGGGGGGSGSGMGGDSELLSAMAEEGIAAVGGGGGGGESGAAEASLA
EAAAAAEAAVADHVSVESEELLRVKMERDGSVKAMQVNGKLSLLARHVDG
SHAQLQLRLGANPGWQMQPHPQLSKPALADEATLRLKDPSRSFPVGERAG
LLRWKLPTGADGAEAPLALVCWPEEVGDGNVVMNIEYAFAEPPERSPDAT
PFSLHNVVVSV
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mRNA from alignment at M-pyrifera_M_contig105700:2..634-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig105700.1225.1 ID=mRNA_M-pyrifera_M_contig105700.1225.1|Name=mRNA_M-pyrifera_M_contig105700.1225.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=633bp|location=Sequence derived from alignment at M-pyrifera_M_contig105700:2..634- (Macrocystis pyrifera P11B4 male)
GGGGGGGGGGGGGGGGGTGGTGGTGGGGGTAGTGGAAGTGGAATGGGTGG AGATTCCGAGTTATTGAGTGCAATGGCAGAAGAAGGAATTGCTGCAGTTG GTGGTGGTGGTGGTGGTGGAGAAAGTGGTGCTGCAGAAGCATCTCTAGCT GAAGCTGCAGCAGCTGCAGAGGCTGCTGTTGCGGATCATGTCTCCGTAGA GTCTGAAGAATTGTTGCGTGTGAAGATGGAACGAGATGGTTCTGTCAAAG CGATGCAAGTGAATGGCAAGTTGAGTCTCCTCGCACGACATGTGGATGGA TCACATGCACAACTTCAATTGCGCCTTGGTGCAAACCCTGGTTGGCAAAT GCAACCACATCCCCAATTGTCCAAACCTGCCTTGGCAGATGAAGCAACCT TGCGCCTCAAAGATCCTTCTCGCTCCTTCCCAGTTGGAGAAAGAGCAGGT TTGTTACGGTGGAAGTTGCCAACAGGAGCTGATGGCGCTGAGGCACCTCT TGCATTGGTGTGTTGGCCTGAAGAAGTTGGGGATGGAAATGTCGTCATGA ACATTGAATATGCCTTTGCAGAACCCCCAGAACGATCTCCAGATGCAACA CCATTCTCTCTCCACAATGTTGTGGTGTCAGTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig105700:2..634-

>mRNA_M-pyrifera_M_contig105700.1225.1 ID=mRNA_M-pyrifera_M_contig105700.1225.1|Name=mRNA_M-pyrifera_M_contig105700.1225.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1266bp|location=Sequence derived from alignment at M-pyrifera_M_contig105700:2..634- (Macrocystis pyrifera P11B4 male)
GGGGGGGGGGGGGGGGGTGGTGGTGGGGGTAGTGGAAGTGGAATGGGTGG
AGATTCCGAGTTATTGAGTGCAATGGCAGAAGAAGGAATTGCTGCAGTTG
GTGGTGGTGGTGGTGGTGGAGAAAGTGGTGCTGCAGAAGCATCTCTAGCT
GAAGCTGCAGCAGCTGCAGAGGCTGCTGTTGCGGATCATGTCTCCGTAGA
GTCTGAAGAATTGTTGCGTGTGAAGATGGAACGAGATGGTTCTGTCAAAG
CGATGCAAGTGAATGGCAAGTTGAGTCTCCTCGCACGACATGTGGATGGA
TCACATGCACAACTTCAATTGCGCCTTGGTGCAAACCCTGGTTGGCAAAT
GCAACCACATCCCCAATTGTCCAAACCTGCCTTGGCAGATGAAGCAACCT
TGCGCCTCAAAGATCCTTCTCGCTCCTTCCCAGTTGGAGAAAGAGCAGGT
TTGTTACGGTGGAAGTTGCCAACAGGAGCTGATGGCGCTGAGGCACCTCT
TGCATTGGTGTGTTGGCCTGAAGAAGTTGGGGATGGAAATGTCGTCATGA
ACATTGAATATGCCTTTGCAGAACCCCCAGAACGATCTCCAGATGCAACA
CCATTCTCTCTCCACAATGTTGTGGTGTCAGTGGGGGGGGGGGGGGGGGG
TGGTGGTGGGGGTAGTGGAAGTGGAATGGGTGGAGATTCCGAGTTATTGA
GTGCAATGGCAGAAGAAGGAATTGCTGCAGTTGGTGGTGGTGGTGGTGGT
GGAGAAAGTGGTGCTGCAGAAGCATCTCTAGCTGAAGCTGCAGCAGCTGC
AGAGGCTGCTGTTGCGGATCATGTCTCCGTAGAGTCTGAAGAATTGTTGC
GTGTGAAGATGGAACGAGATGGTTCTGTCAAAGCGATGCAAGTGAATGGC
AAGTTGAGTCTCCTCGCACGACATGTGGATGGATCACATGCACAACTTCA
ATTGCGCCTTGGTGCAAACCCTGGTTGGCAAATGCAACCACATCCCCAAT
TGTCCAAACCTGCCTTGGCAGATGAAGCAACCTTGCGCCTCAAAGATCCT
TCTCGCTCCTTCCCAGTTGGAGAAAGAGCAGGTTTGTTACGGTGGAAGTT
GCCAACAGGAGCTGATGGCGCTGAGGCACCTCTTGCATTGGTGTGTTGGC
CTGAAGAAGTTGGGGATGGAAATGTCGTCATGAACATTGAATATGCCTTT
GCAGAACCCCCAGAACGATCTCCAGATGCAACACCATTCTCTCTCCACAA
TGTTGTGGTGTCAGTG
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