mRNA_M-pyrifera_M_contig105698.1223.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig105698.1223.1
Unique NamemRNA_M-pyrifera_M_contig105698.1223.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig105698.1223.1 vs. uniprot
Match: A0A2E7KI17_9PLAN (Uncharacterized protein n=8 Tax=Gimesia TaxID=1649453 RepID=A0A2E7KI17_9PLAN)

HSP 1 Score: 169 bits (429), Expect = 1.800e-48
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 1
Query:    1 WTHFEITCKGPHISVAVNGEVVAKLNADEWTEPGKRLDGSAHKFKAAVKDFPRKGYIGFQDHGHKVWYKNVKLLEL 228
            WTHFEITCKGPHISVAVNGEVVAKLNADEWTEPGKRLDGSAHKFKAAVKDFPRKGYIGFQDHGHKVWYKNVKLLEL
Sbjct:  485 WTHFEITCKGPHISVAVNGEVVAKLNADEWTEPGKRLDGSAHKFKAAVKDFPRKGYIGFQDHGHKVWYKNVKLLEL 560          
BLAST of mRNA_M-pyrifera_M_contig105698.1223.1 vs. uniprot
Match: A0A3C0AK45_9PLAN (DUF1080 domain-containing protein (Fragment) n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A3C0AK45_9PLAN)

HSP 1 Score: 152 bits (383), Expect = 2.570e-46
Identity = 66/76 (86.84%), Postives = 70/76 (92.11%), Query Frame = 1
Query:    1 WTHFEITCKGPHISVAVNGEVVAKLNADEWTEPGKRLDGSAHKFKAAVKDFPRKGYIGFQDHGHKVWYKNVKLLEL 228
            WT+ EITC GPH+SVAVN E+VAKLNADEWTEPGKRLDGS HKFK AVKDFPRKGY+GFQDHGHKVWYKNVKLL L
Sbjct:   31 WTNIEITCNGPHVSVAVNNEIVAKLNADEWTEPGKRLDGSDHKFKDAVKDFPRKGYLGFQDHGHKVWYKNVKLLAL 106          
BLAST of mRNA_M-pyrifera_M_contig105698.1223.1 vs. uniprot
Match: A0A2D5H6H7_9PLAN (Uncharacterized protein n=10 Tax=Planctomycetaceae TaxID=126 RepID=A0A2D5H6H7_9PLAN)

HSP 1 Score: 159 bits (402), Expect = 1.300e-44
Identity = 69/76 (90.79%), Postives = 75/76 (98.68%), Query Frame = 1
Query:    1 WTHFEITCKGPHISVAVNGEVVAKLNADEWTEPGKRLDGSAHKFKAAVKDFPRKGYIGFQDHGHKVWYKNVKLLEL 228
            WT+ EITC+GPH+SVAVNG+VVAKLNADEWTEPGKRLDGS+HKFKAAVKDFPRKGY+GFQDHGHKVWYKNVKLLEL
Sbjct:  476 WTNLEITCQGPHVSVAVNGKVVAKLNADEWTEPGKRLDGSSHKFKAAVKDFPRKGYLGFQDHGHKVWYKNVKLLEL 551          
BLAST of mRNA_M-pyrifera_M_contig105698.1223.1 vs. uniprot
Match: A0A355G5V2_9PLAN (DUF1080 domain-containing protein (Fragment) n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A355G5V2_9PLAN)

HSP 1 Score: 152 bits (383), Expect = 4.620e-44
Identity = 66/76 (86.84%), Postives = 70/76 (92.11%), Query Frame = 1
Query:    1 WTHFEITCKGPHISVAVNGEVVAKLNADEWTEPGKRLDGSAHKFKAAVKDFPRKGYIGFQDHGHKVWYKNVKLLEL 228
            WT+ EITC GPH+SVAVN E+VAKLNADEWTEPGKRLDGS HKFK AVKDFPRKGY+GFQDHGHKVWYKNVKLL L
Sbjct:  209 WTNIEITCNGPHVSVAVNNEIVAKLNADEWTEPGKRLDGSDHKFKDAVKDFPRKGYLGFQDHGHKVWYKNVKLLAL 284          
BLAST of mRNA_M-pyrifera_M_contig105698.1223.1 vs. uniprot
Match: A0A517WPN6_9PLAN (Oxidoreductase family, NAD-binding Rossmann fold n=2 Tax=Gimesia aquarii TaxID=2527964 RepID=A0A517WPN6_9PLAN)

HSP 1 Score: 152 bits (385), Expect = 4.320e-42
Identity = 66/76 (86.84%), Postives = 73/76 (96.05%), Query Frame = 1
Query:    1 WTHFEITCKGPHISVAVNGEVVAKLNADEWTEPGKRLDGSAHKFKAAVKDFPRKGYIGFQDHGHKVWYKNVKLLEL 228
            WT+ EITC+GPHISVAVNG+VVA L+ADEWT+PGKRLDGS HKFKAAVKDFPRKGY+GFQDHGHKVWYKNVKLL+L
Sbjct:  485 WTNIEITCQGPHISVAVNGKVVASLDADEWTQPGKRLDGSKHKFKAAVKDFPRKGYLGFQDHGHKVWYKNVKLLDL 560          
BLAST of mRNA_M-pyrifera_M_contig105698.1223.1 vs. uniprot
Match: A0A518IKF1_9PLAN (Oxidoreductase family, NAD-binding Rossmann fold n=2 Tax=Gimesia TaxID=1649453 RepID=A0A518IKF1_9PLAN)

HSP 1 Score: 152 bits (383), Expect = 7.990e-42
Identity = 66/76 (86.84%), Postives = 72/76 (94.74%), Query Frame = 1
Query:    1 WTHFEITCKGPHISVAVNGEVVAKLNADEWTEPGKRLDGSAHKFKAAVKDFPRKGYIGFQDHGHKVWYKNVKLLEL 228
            WT+ EITCKGP +SVAVNG++VA LNADEWTEPG+RLDGS HKFKAAVKDFPR+GYIGFQDHGHKVWYKNVKLLEL
Sbjct:  485 WTNIEITCKGPRVSVAVNGKLVASLNADEWTEPGRRLDGSKHKFKAAVKDFPREGYIGFQDHGHKVWYKNVKLLEL 560          
BLAST of mRNA_M-pyrifera_M_contig105698.1223.1 vs. uniprot
Match: L0DF46_SINAD (DUF1080 domain-containing protein n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) TaxID=886293 RepID=L0DF46_SINAD)

HSP 1 Score: 117 bits (294), Expect = 2.100e-31
Identity = 50/76 (65.79%), Postives = 59/76 (77.63%), Query Frame = 1
Query:    1 WTHFEITCKGPHISVAVNGEVVAKLNADEWTEPGKRLDGSAHKFKAAVKDFPRKGYIGFQDHGHKVWYKNVKLLEL 228
            W H  IT KGP I VA+NGE V+K++ D++ EPGKR DGS HKFKAA+KDFPR GY GFQDHG   WYKNVK+ +L
Sbjct:  141 WNHMTITAKGPIIEVALNGEPVSKIDVDQFAEPGKRPDGSKHKFKAAIKDFPRSGYFGFQDHGKDCWYKNVKIQDL 216          
BLAST of mRNA_M-pyrifera_M_contig105698.1223.1 vs. uniprot
Match: A0A836RPS1_9PLAN (DUF1080 domain-containing protein n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A836RPS1_9PLAN)

HSP 1 Score: 110 bits (274), Expect = 1.830e-29
Identity = 49/79 (62.03%), Postives = 59/79 (74.68%), Query Frame = 1
Query:    1 WTHFEITCKGPHISVAVNGEVVAKLNADEWTEPGKRLDGSAHKFKAA---VKDFPRKGYIGFQDHGHKVWYKNVKLLEL 228
            W    ITC GP ISV VNGE++ +++ DE+TE GKR DGS HKF      +KDF R+GYIGFQDHGHKVW+KNVK+ EL
Sbjct:   38 WNSVTITCCGPEISVEVNGELICRIDCDEFTEVGKRPDGSRHKFSRRGIPIKDFAREGYIGFQDHGHKVWFKNVKIKEL 116          
BLAST of mRNA_M-pyrifera_M_contig105698.1223.1 vs. uniprot
Match: A0A2E2HPW4_9BACT (DUF1080 domain-containing protein n=2 Tax=Verrucomicrobiales bacterium TaxID=2026801 RepID=A0A2E2HPW4_9BACT)

HSP 1 Score: 108 bits (271), Expect = 5.650e-28
Identity = 45/76 (59.21%), Postives = 55/76 (72.37%), Query Frame = 1
Query:    1 WTHFEITCKGPHISVAVNGEVVAKLNADEWTEPGKRLDGSAHKFKAAVKDFPRKGYIGFQDHGHKVWYKNVKLLEL 228
            W  F ITCKGPH++V +NG VV K N D+WT   K  DGS +KF+ A+KD PRKG+IGFQDHG  VWY+N+ L  L
Sbjct:  138 WNRFIITCKGPHVTVNINGTVVVKANLDKWTTGNKNPDGSRNKFRTALKDLPRKGHIGFQDHGQDVWYRNIYLKNL 213          
BLAST of mRNA_M-pyrifera_M_contig105698.1223.1 vs. uniprot
Match: A0A831XQZ5_9BACT (DUF1080 domain-containing protein n=1 Tax=Candidatus Hydrogenedentes bacterium TaxID=2030809 RepID=A0A831XQZ5_9BACT)

HSP 1 Score: 108 bits (270), Expect = 1.140e-27
Identity = 47/76 (61.84%), Postives = 54/76 (71.05%), Query Frame = 1
Query:    1 WTHFEITCKGPHISVAVNGEVVAKLNADEWTEPGKRLDGSAHKFKAAVKDFPRKGYIGFQDHGHKVWYKNVKLLEL 228
            W H EITC    + V +NGE VA ++ DEWT+P KR DG+ HKF  A KD PRKGYIG QDHGH VWYKN+KL  L
Sbjct:  152 WNHAEITCDDNLVKVVLNGEEVASMDLDEWTQPYKRPDGTKHKFFTAWKDHPRKGYIGLQDHGHPVWYKNIKLKPL 227          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig105698.1223.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2E7KI17_9PLAN1.800e-48100.00Uncharacterized protein n=8 Tax=Gimesia TaxID=1649... [more]
A0A3C0AK45_9PLAN2.570e-4686.84DUF1080 domain-containing protein (Fragment) n=1 T... [more]
A0A2D5H6H7_9PLAN1.300e-4490.79Uncharacterized protein n=10 Tax=Planctomycetaceae... [more]
A0A355G5V2_9PLAN4.620e-4486.84DUF1080 domain-containing protein (Fragment) n=1 T... [more]
A0A517WPN6_9PLAN4.320e-4286.84Oxidoreductase family, NAD-binding Rossmann fold n... [more]
A0A518IKF1_9PLAN7.990e-4286.84Oxidoreductase family, NAD-binding Rossmann fold n... [more]
L0DF46_SINAD2.100e-3165.79DUF1080 domain-containing protein n=1 Tax=Singulis... [more]
A0A836RPS1_9PLAN1.830e-2962.03DUF1080 domain-containing protein n=1 Tax=Planctom... [more]
A0A2E2HPW4_9BACT5.650e-2859.21DUF1080 domain-containing protein n=2 Tax=Verrucom... [more]
A0A831XQZ5_9BACT1.140e-2761.84DUF1080 domain-containing protein n=1 Tax=Candidat... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig105698contigM-pyrifera_M_contig105698:3..233 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score157.9
Seed ortholog evalue1.9e-36
Seed eggNOG ortholog344747.PM8797T_11996
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Oxidoreductase
EggNOG OGs2IWZY@203682,COG0673@1,COG0673@2,COG2133@1,COG2133@2
COG Functional cat.G
Best tax levelPlanctomycetes
Best eggNOG OGNA|NA|NA
Exons1
Model size231
Cds size231
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815565.7535667-CDS-M-pyrifera_M_contig105698:2..2331622815565.7535667-CDS-M-pyrifera_M_contig105698:2..233Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig105698 3..233 +
1692277466.342823-CDS-M-pyrifera_M_contig105698:2..2331692277466.342823-CDS-M-pyrifera_M_contig105698:2..233Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig105698 3..233 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig105698.1223.1prot_M-pyrifera_M_contig105698.1223.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig105698 3..233 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig105698.1223.1

>prot_M-pyrifera_M_contig105698.1223.1 ID=prot_M-pyrifera_M_contig105698.1223.1|Name=mRNA_M-pyrifera_M_contig105698.1223.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=77bp
WTHFEITCKGPHISVAVNGEVVAKLNADEWTEPGKRLDGSAHKFKAAVKD
FPRKGYIGFQDHGHKVWYKNVKLLEL*
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mRNA from alignment at M-pyrifera_M_contig105698:3..233+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig105698.1223.1 ID=mRNA_M-pyrifera_M_contig105698.1223.1|Name=mRNA_M-pyrifera_M_contig105698.1223.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=231bp|location=Sequence derived from alignment at M-pyrifera_M_contig105698:3..233+ (Macrocystis pyrifera P11B4 male)
TGGACTCATTTTGAGATTACCTGCAAAGGTCCGCACATCAGCGTCGCCGT GAATGGAGAAGTGGTTGCCAAACTGAATGCAGATGAATGGACTGAGCCGG GCAAGCGTCTGGATGGTTCTGCGCACAAGTTCAAGGCGGCCGTCAAAGAC TTCCCGCGGAAAGGTTACATCGGTTTTCAGGACCACGGACACAAAGTCTG GTATAAGAATGTAAAGTTGCTGGAACTGTAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig105698:3..233+

>mRNA_M-pyrifera_M_contig105698.1223.1 ID=mRNA_M-pyrifera_M_contig105698.1223.1|Name=mRNA_M-pyrifera_M_contig105698.1223.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=462bp|location=Sequence derived from alignment at M-pyrifera_M_contig105698:3..233+ (Macrocystis pyrifera P11B4 male)
TGGACTCATTTTGAGATTACCTGCAAAGGTCCGCACATCAGCGTCGCCGT
GAATGGAGAAGTGGTTGCCAAACTGAATGCAGATGAATGGACTGAGCCGG
GCAAGCGTCTGGATGGTTCTGCGCACAAGTTCAAGGCGGCCGTCAAAGAC
TTCCCGCGGAAAGGTTACATCGGTTTTCAGGACCACGGACACAAAGTCTG
GTATAAGAATGTAAAGTTGCTGGAACTGTAATGGACTCATTTTGAGATTA
CCTGCAAAGGTCCGCACATCAGCGTCGCCGTGAATGGAGAAGTGGTTGCC
AAACTGAATGCAGATGAATGGACTGAGCCGGGCAAGCGTCTGGATGGTTC
TGCGCACAAGTTCAAGGCGGCCGTCAAAGACTTCCCGCGGAAAGGTTACA
TCGGTTTTCAGGACCACGGACACAAAGTCTGGTATAAGAATGTAAAGTTG
CTGGAACTGTAA
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