mRNA_M-pyrifera_M_contig105683.1220.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig105683.1220.1
Unique NamemRNA_M-pyrifera_M_contig105683.1220.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig105683.1220.1 vs. uniprot
Match: A0A517WED0_9PLAN (Sialidase B n=7 Tax=Gimesia TaxID=1649453 RepID=A0A517WED0_9PLAN)

HSP 1 Score: 422 bits (1085), Expect = 3.430e-143
Identity = 207/210 (98.57%), Postives = 209/210 (99.52%), Query Frame = 1
Query:    1 ALIVLAKAEPPKDEIIVTDVYEASKEYPRYSEGSILPLNDGSLLFATTQFIGSGSDFATARIIAKKSTDGGRTWSKPRVLQENTGKKNVMSATLRYLAGPEHEQRPIGLFYLKKNTLSDLKAYLKISSDNGKTFGPPTEITTPPGYHVMNNDRITILSTGRWLAPVASTADVHKENHFVCTCFISDDQGKTWRQSKGKVDYARRGAMEPE 630
            ALIVLAKAE PKDEIIVTDVYEASKEYPRYSEGSILPLNDGSLLFATTQFIGSGSDFATARIIAKKSTDGGRTWSKPRVLQENTGKKNVMSATLRYLAGPEHEQRPIGLFYLKKNTLSDLKAYLKIS+DNGKTFGPPTEITTPPGYHVMNNDRITILSTGRWLAPVASTADVHKENHFVCTCFISDDQGK+WRQSKGKVDYARRGAMEPE
Sbjct:  282 ALIVLAKAEAPKDEIIVTDVYEASKEYPRYSEGSILPLNDGSLLFATTQFIGSGSDFATARIIAKKSTDGGRTWSKPRVLQENTGKKNVMSATLRYLAGPEHEQRPIGLFYLKKNTLSDLKAYLKISNDNGKTFGPPTEITTPPGYHVMNNDRITILSTGRWLAPVASTADVHKENHFVCTCFISDDQGKSWRQSKGKVDYARRGAMEPE 491          
BLAST of mRNA_M-pyrifera_M_contig105683.1220.1 vs. uniprot
Match: A0A3C0AQF3_9PLAN (Sialidase (Fragment) n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A3C0AQF3_9PLAN)

HSP 1 Score: 389 bits (998), Expect = 1.970e-133
Identity = 189/210 (90.00%), Postives = 197/210 (93.81%), Query Frame = 1
Query:    1 ALIVLAKAEPPKDEIIVTDVYEASKEYPRYSEGSILPLNDGSLLFATTQFIGSGSDFATARIIAKKSTDGGRTWSKPRVLQENTGKKNVMSATLRYLAGPEHEQRPIGLFYLKKNTLSDLKAYLKISSDNGKTFGPPTEITTPPGYHVMNNDRITILSTGRWLAPVASTADVHKENHFVCTCFISDDQGKTWRQSKGKVDYARRGAMEPE 630
            ALIVLAK E P+DEI+V+DVYEASKEYPRYSEGSILPLNDGSLL+ATTQFIGSGSDFATARIIAKKSTDGGRTW K RVLQENTGKKNVMSATLRYLAGP  E+RPIGLFYLKKNTLSDLKAYLK+S DNGKTFGPP EITTPPGYHVMNNDRITILS GRWLAPVAST DVHK NHFVCTCFISDDQGKTW+QS G VDYA+RGAMEPE
Sbjct:   35 ALIVLAKNEHPQDEIVVSDVYEASKEYPRYSEGSILPLNDGSLLYATTQFIGSGSDFATARIIAKKSTDGGRTWGKQRVLQENTGKKNVMSATLRYLAGPLQEKRPIGLFYLKKNTLSDLKAYLKVSDDNGKTFGPPIEITTPPGYHVMNNDRITILSNGRWLAPVASTPDVHKNNHFVCTCFISDDQGKTWKQSTGNVDYAKRGAMEPE 244          
BLAST of mRNA_M-pyrifera_M_contig105683.1220.1 vs. uniprot
Match: A0A517VFK6_9PLAN (Sialidase B n=11 Tax=Planctomycetaceae TaxID=126 RepID=A0A517VFK6_9PLAN)

HSP 1 Score: 393 bits (1009), Expect = 9.520e-132
Identity = 190/210 (90.48%), Postives = 198/210 (94.29%), Query Frame = 1
Query:    1 ALIVLAKAEPPKDEIIVTDVYEASKEYPRYSEGSILPLNDGSLLFATTQFIGSGSDFATARIIAKKSTDGGRTWSKPRVLQENTGKKNVMSATLRYLAGPEHEQRPIGLFYLKKNTLSDLKAYLKISSDNGKTFGPPTEITTPPGYHVMNNDRITILSTGRWLAPVASTADVHKENHFVCTCFISDDQGKTWRQSKGKVDYARRGAMEPE 630
            ALIVLAK+EPP+DEI+V DVYEASKEYPRYSEGSILPLNDGSLL+ATTQFIGSGSDFATARIIAKKSTDGGRTW K RVLQENTGKKNVMSATLRYLAGP  E+RPIGLFYLKKNTLSDLKAYLK+S DNGKTFGPP EITTPPGYHVMNNDRITILS GRWLAPVAST DVHK NHFVCTCFISDDQGKTW+QSK  VDYA+RGAMEPE
Sbjct:  281 ALIVLAKSEPPQDEIVVNDVYEASKEYPRYSEGSILPLNDGSLLYATTQFIGSGSDFATARIIAKKSTDGGRTWGKQRVLQENTGKKNVMSATLRYLAGPMQEKRPIGLFYLKKNTLSDLKAYLKVSEDNGKTFGPPIEITTPPGYHVMNNDRITILSNGRWLAPVASTPDVHKNNHFVCTCFISDDQGKTWKQSKDNVDYAKRGAMEPE 490          
BLAST of mRNA_M-pyrifera_M_contig105683.1220.1 vs. uniprot
Match: A0A518A7Y8_9PLAN (Sialidase B n=3 Tax=Gimesia panareensis TaxID=2527978 RepID=A0A518A7Y8_9PLAN)

HSP 1 Score: 392 bits (1007), Expect = 1.960e-131
Identity = 190/210 (90.48%), Postives = 200/210 (95.24%), Query Frame = 1
Query:    1 ALIVLAKAEPPKDEIIVTDVYEASKEYPRYSEGSILPLNDGSLLFATTQFIGSGSDFATARIIAKKSTDGGRTWSKPRVLQENTGKKNVMSATLRYLAGPEHEQRPIGLFYLKKNTLSDLKAYLKISSDNGKTFGPPTEITTPPGYHVMNNDRITILSTGRWLAPVASTADVHKENHFVCTCFISDDQGKTWRQSKGKVDYARRGAMEPE 630
            ALIV+AK+EPPKDEI+V+DVYEAS EYPRYSEGSILPLNDGSLL+ATTQF+GS SDFATARII KKSTDGGRTWSKPRVLQENTGKKNVMSATLRYLA P HE+RPIGLFYLKKNTLSDLKAYLKIS+DN KTFGPP EITTPPGYHVMNNDRITILS+GRWLAPVASTADV K NHFVCTCFISDDQGKTWRQSKG VDYA+RGAMEPE
Sbjct:  281 ALIVMAKSEPPKDEIVVSDVYEASNEYPRYSEGSILPLNDGSLLYATTQFVGSHSDFATARIIGKKSTDGGRTWSKPRVLQENTGKKNVMSATLRYLASPLHEKRPIGLFYLKKNTLSDLKAYLKISNDNAKTFGPPIEITTPPGYHVMNNDRITILSSGRWLAPVASTADVGKVNHFVCTCFISDDQGKTWRQSKGSVDYAKRGAMEPE 490          
BLAST of mRNA_M-pyrifera_M_contig105683.1220.1 vs. uniprot
Match: A0A517RGZ8_9PLAN (Sialidase B n=2 Tax=Gimesia TaxID=1649453 RepID=A0A517RGZ8_9PLAN)

HSP 1 Score: 375 bits (964), Expect = 6.620e-125
Identity = 183/211 (86.73%), Postives = 196/211 (92.89%), Query Frame = 1
Query:    1 ALIVLAKAEP-PKDEIIVTDVYEASKEYPRYSEGSILPLNDGSLLFATTQFIGSGSDFATARIIAKKSTDGGRTWSKPRVLQENTGKKNVMSATLRYLAGPEHEQRPIGLFYLKKNTLSDLKAYLKISSDNGKTFGPPTEITTPPGYHVMNNDRITILSTGRWLAPVASTADVHKENHFVCTCFISDDQGKTWRQSKGKVDYARRGAMEPE 630
            ALIVLA+ +  PKDEI+V DVYE SKEYPRYSEGSILPLNDGSLL+ATTQFIGSGSDFA+ARIIAKKSTDGGRTWSKPRVLQENTGKKNVMSATLRYL+GP HEQRPIGLFYLKKNTLSDLKA+LK+S DNGKTFG P EIT PPGYHVMNNDR+TILS+GRWLAPVAST DV + NHF+ TCFISDDQGKTWRQSKG VDYA+RGAMEPE
Sbjct:  285 ALIVLAQTDQYPKDEIVVNDVYEFSKEYPRYSEGSILPLNDGSLLYATTQFIGSGSDFASARIIAKKSTDGGRTWSKPRVLQENTGKKNVMSATLRYLSGPMHEQRPIGLFYLKKNTLSDLKAFLKVSYDNGKTFGSPIEITAPPGYHVMNNDRVTILSSGRWLAPVASTPDVRESNHFISTCFISDDQGKTWRQSKGSVDYAKRGAMEPE 495          
BLAST of mRNA_M-pyrifera_M_contig105683.1220.1 vs. uniprot
Match: A0A517VW94_9PLAN (Sialidase B n=3 Tax=Gimesia aquarii TaxID=2527964 RepID=A0A517VW94_9PLAN)

HSP 1 Score: 361 bits (927), Expect = 2.510e-119
Identity = 176/211 (83.41%), Postives = 190/211 (90.05%), Query Frame = 1
Query:    1 ALIVLAKAEP-PKDEIIVTDVYEASKEYPRYSEGSILPLNDGSLLFATTQFIGSGSDFATARIIAKKSTDGGRTWSKPRVLQENTGKKNVMSATLRYLAGPEHEQRPIGLFYLKKNTLSDLKAYLKISSDNGKTFGPPTEITTPPGYHVMNNDRITILSTGRWLAPVASTADVHKENHFVCTCFISDDQGKTWRQSKGKVDYARRGAMEPE 630
            ALIVLAK  P P+ E++V +++ +SK+YPRYSEGSILPLNDGSLL+ATTQFI SGSDFATARII K STDGGRTWS+PRVLQENTGKKNVMSATLRY+ GP HE+RPIGLFYLKKNT SDLKAYLKIS DNGKTFG   EIT PPGYHVMNNDRITILS+GRWLAPVASTADV   NHFVCTCFISDDQGKTWRQSKG VDYA+RGAMEPE
Sbjct:  286 ALIVLAKTAPHPRGEVVVNELFPSSKKYPRYSEGSILPLNDGSLLYATTQFIDSGSDFATARIIGKTSTDGGRTWSEPRVLQENTGKKNVMSATLRYIKGPMHEKRPIGLFYLKKNTYSDLKAYLKISEDNGKTFGEAIEITVPPGYHVMNNDRITILSSGRWLAPVASTADVRNVNHFVCTCFISDDQGKTWRQSKGSVDYAKRGAMEPE 496          
BLAST of mRNA_M-pyrifera_M_contig105683.1220.1 vs. uniprot
Match: A0A2E7KAN3_9PLAN (Sialidase (Fragment) n=1 Tax=Gimesia sp. TaxID=2024833 RepID=A0A2E7KAN3_9PLAN)

HSP 1 Score: 333 bits (853), Expect = 1.110e-110
Identity = 165/166 (99.40%), Postives = 166/166 (100.00%), Query Frame = 1
Query:    1 ALIVLAKAEPPKDEIIVTDVYEASKEYPRYSEGSILPLNDGSLLFATTQFIGSGSDFATARIIAKKSTDGGRTWSKPRVLQENTGKKNVMSATLRYLAGPEHEQRPIGLFYLKKNTLSDLKAYLKISSDNGKTFGPPTEITTPPGYHVMNNDRITILSTGRWLAPV 498
            ALIVLAKAEPPKDEIIVTDVYEASKEYPRYSEGSILPLNDGSLLFATTQFIGSGSDFATARIIAKKSTDGGRTWSKPRVLQENTGKKNVMSATLRYLAGPEHEQRPIGLFYLKKNTLSDLKAYLKIS+DNGKTFGPPTEITTPPGYHVMNNDRITILSTGRWLAPV
Sbjct:  281 ALIVLAKAEPPKDEIIVTDVYEASKEYPRYSEGSILPLNDGSLLFATTQFIGSGSDFATARIIAKKSTDGGRTWSKPRVLQENTGKKNVMSATLRYLAGPEHEQRPIGLFYLKKNTLSDLKAYLKISNDNGKTFGPPTEITTPPGYHVMNNDRITILSTGRWLAPV 446          
BLAST of mRNA_M-pyrifera_M_contig105683.1220.1 vs. uniprot
Match: A0A7C7V546_9PLAN (Sialidase n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A7C7V546_9PLAN)

HSP 1 Score: 262 bits (670), Expect = 7.200e-81
Identity = 129/211 (61.14%), Postives = 161/211 (76.30%), Query Frame = 1
Query:    1 ALIVLAKAEP-PKDEIIVTDVYEASKEYPRYSEGSILPLNDGSLLFATTQFIGSGSDFATARIIAKKSTDGGRTWSKPRVLQENTGKKNVMSATLRYLAGPEHEQRPIGLFYLKKNTLSDLKAYLKISSDNGKTFGPPTEITTPPGYHVMNNDRITILSTGRWLAPVASTADVHKENHFVCTCFISDDQGKTWRQSKGKVDYARRGAMEPE 630
            +L+VL++  P  +  ++  DVY A+ + PRYSEG I+ L DG+LL+ATT+FIGSGSD A A IIA +STDGGRTWS+PRVLQ N GK+NVMS TLR LA P  E+ PIGLFYL KN+ SDLK YL+IS D  +TFG P  ++  PGYHVMNNDR+T+LS+GR +APVA T DV + NHF+  C  SDD G+TWR+ +G+VDY  RGAMEPE
Sbjct:  287 SLLVLSQPVPLGRTAVLSRDVYVATPQNPRYSEGDIVALRDGTLLYATTEFIGSGSDHARAHIIACQSTDGGRTWSEPRVLQSNVGKQNVMSVTLRRLAYPVREETPIGLFYLVKNSPSDLKVYLRISRDEARTFGDPVLVSDMPGYHVMNNDRVTLLSSGRLVAPVAWTKDVRRVNHFISFCLFSDDGGRTWRRGRGQVDYPERGAMEPE 497          
BLAST of mRNA_M-pyrifera_M_contig105683.1220.1 vs. uniprot
Match: A0A3M1M312_9BACT (Exo-alpha-sialidase (Fragment) n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3M1M312_9BACT)

HSP 1 Score: 254 bits (649), Expect = 1.970e-80
Identity = 117/198 (59.09%), Postives = 153/198 (77.27%), Query Frame = 1
Query:   37 DEIIVTDVYEASKEYPRYSEGSILPLNDGSLLFATTQFIGSGSDFATARIIAKKSTDGGRTWSKPRVLQENTGKKNVMSATLRYLAGPEHEQRPIGLFYLKKNTLSDLKAYLKISSDNGKTFGPPTEITTPPGYHVMNNDRITILSTGRWLAPVASTADVHKENHFVCTCFISDDQGKTWRQSKGKVDYARRGAMEPE 630
            DE +   VY A  ++PRY+EGSI+ L DGSLLFA T+F+G GSDF+ ARI+ ++S+DGGRTWS+P VLQENTGK+NVMS TLR +   +     + +FYL+KN   DL+  ++ SSD G++FGPP  +TT PGYHV+NNDR+TILS+GRW+ P AST DV +ENHFV  C+ISDD+G+TWR  +G+VD  RRGAMEP+
Sbjct:   57 DEDLSVLVYPADAQHPRYTEGSIVELEDGSLLFAITEFMGGGSDFSQARIVGRRSSDGGRTWSQPEVLQENTGKQNVMSVTLRRIDRDDGASE-LAMFYLEKNGFDDLQMLVRFSSDQGRSFGPPVRVTTDPGYHVVNNDRVTILSSGRWIVPAASTRDVRQENHFVSRCYISDDRGRTWRPGRGRVDAPRRGAMEPD 253          
BLAST of mRNA_M-pyrifera_M_contig105683.1220.1 vs. uniprot
Match: A0A5C6BG72_9BACT (Sialidase n=2 Tax=Novipirellula galeiformis TaxID=2528004 RepID=A0A5C6BG72_9BACT)

HSP 1 Score: 250 bits (639), Expect = 1.950e-76
Identity = 130/211 (61.61%), Postives = 155/211 (73.46%), Query Frame = 1
Query:    1 ALIVLAKAEP-PKDEIIVTDVYEASKEYPRYSEGSILPLNDGSLLFATTQFIGSGSDFATARIIAKKSTDGGRTWSKPRVLQENTGKKNVMSATLRYLAGPEHEQRPIGLFYLKKNTLSDLKAYLKISSDNGKTFGPPTEITTPPGYHVMNNDRITILSTGRWLAPVASTADVHKENHFVCTCFISDDQGKTWRQSKGKVDYARRGAMEPE 630
            +L+VL+   P P D  + T VY+A  E+PRY+EGSI+ LNDGSLLFA T+F GSGSDFA A ++A++STDGGRTWS  RVLQ NTG  NVMS TLR LA        IG+ YL+KN+ S+L  YL+IS+D G TFG P +++T  GYHV+NNDRIT LSTGR L P AST DV   NHF   CF+SDD GKTWR SKGKVD  +RGAMEPE
Sbjct:  284 SLLVLSGPVPEPSDADVSTLVYQAKPEHPRYTEGSIVALNDGSLLFAVTEFHGSGSDFAQAHVVARQSTDGGRTWSASRVLQPNTGGMNVMSVTLRRLADGS-----IGMVYLQKNSHSELTPYLRISTDEGATFGEPVKVSTAAGYHVVNNDRITALSTGRLLLPAASTPDVATNNHFQSHCFLSDDGGKTWRDSKGKVDADKRGAMEPE 489          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig105683.1220.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A517WED0_9PLAN3.430e-14398.57Sialidase B n=7 Tax=Gimesia TaxID=1649453 RepID=A0... [more]
A0A3C0AQF3_9PLAN1.970e-13390.00Sialidase (Fragment) n=1 Tax=Planctomycetaceae bac... [more]
A0A517VFK6_9PLAN9.520e-13290.48Sialidase B n=11 Tax=Planctomycetaceae TaxID=126 R... [more]
A0A518A7Y8_9PLAN1.960e-13190.48Sialidase B n=3 Tax=Gimesia panareensis TaxID=2527... [more]
A0A517RGZ8_9PLAN6.620e-12586.73Sialidase B n=2 Tax=Gimesia TaxID=1649453 RepID=A0... [more]
A0A517VW94_9PLAN2.510e-11983.41Sialidase B n=3 Tax=Gimesia aquarii TaxID=2527964 ... [more]
A0A2E7KAN3_9PLAN1.110e-11099.40Sialidase (Fragment) n=1 Tax=Gimesia sp. TaxID=202... [more]
A0A7C7V546_9PLAN7.200e-8161.14Sialidase n=1 Tax=Planctomycetaceae bacterium TaxI... [more]
A0A3M1M312_9BACT1.970e-8059.09Exo-alpha-sialidase (Fragment) n=1 Tax=Planctomyce... [more]
A0A5C6BG72_9BACT1.950e-7661.61Sialidase n=2 Tax=Novipirellula galeiformis TaxID=... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig105683contigM-pyrifera_M_contig105683:3..632 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score392.1
Seed ortholog evalue1.6e-106
Seed eggNOG ortholog344747.PM8797T_27342
KEGG rclassRC00028,RC00077
KEGG koko:K01138,ko:K01186
KEGG ReactionR04018
KEGG Pathwayko00511,ko00600,ko04142,map00511,map00600,map04142
Hectar predicted targeting categoryother localisation
EggNOG free text desc.COG1413 FOG HEAT repeat
EggNOG OGs2IWWF@203682,COG1413@1,COG1413@2,COG4409@1,COG4409@2
EC3.2.1.18
COG Functional cat.CG
CAZyGH33
Best tax levelPlanctomycetes
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko02042
Exons1
Model size630
Cds size630
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815565.6512454-CDS-M-pyrifera_M_contig105683:2..6321622815565.6512454-CDS-M-pyrifera_M_contig105683:2..632Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig105683 3..632 +
1692277466.313652-CDS-M-pyrifera_M_contig105683:2..6321692277466.313652-CDS-M-pyrifera_M_contig105683:2..632Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig105683 3..632 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig105683.1220.1prot_M-pyrifera_M_contig105683.1220.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig105683 3..632 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig105683.1220.1

>prot_M-pyrifera_M_contig105683.1220.1 ID=prot_M-pyrifera_M_contig105683.1220.1|Name=mRNA_M-pyrifera_M_contig105683.1220.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=210bp
ALIVLAKAEPPKDEIIVTDVYEASKEYPRYSEGSILPLNDGSLLFATTQF
IGSGSDFATARIIAKKSTDGGRTWSKPRVLQENTGKKNVMSATLRYLAGP
EHEQRPIGLFYLKKNTLSDLKAYLKISSDNGKTFGPPTEITTPPGYHVMN
NDRITILSTGRWLAPVASTADVHKENHFVCTCFISDDQGKTWRQSKGKVD
YARRGAMEPE
back to top

mRNA from alignment at M-pyrifera_M_contig105683:3..632+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig105683.1220.1 ID=mRNA_M-pyrifera_M_contig105683.1220.1|Name=mRNA_M-pyrifera_M_contig105683.1220.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=630bp|location=Sequence derived from alignment at M-pyrifera_M_contig105683:3..632+ (Macrocystis pyrifera P11B4 male)
GCACTGATCGTGCTGGCAAAGGCTGAGCCACCCAAAGACGAGATTATCGT CACCGACGTGTATGAAGCTTCGAAAGAGTATCCCCGCTACAGTGAAGGTT CGATCCTGCCTTTAAACGATGGTTCGCTGCTCTTCGCGACAACACAGTTT ATCGGCAGCGGTTCCGATTTCGCGACGGCCCGGATCATTGCGAAAAAGTC AACTGACGGTGGACGCACCTGGAGCAAACCACGCGTCCTGCAGGAAAATA CGGGGAAGAAGAATGTCATGTCGGCCACGCTGCGTTACCTGGCTGGCCCC GAGCATGAACAGCGACCGATTGGTCTGTTCTATCTGAAAAAGAATACGCT ATCGGACCTGAAGGCGTACCTTAAGATTTCCAGTGACAATGGAAAGACAT TTGGACCGCCGACCGAGATTACGACTCCCCCCGGGTATCACGTGATGAAC AATGACCGGATTACGATTCTCTCCACTGGACGCTGGCTGGCCCCCGTGGC TTCGACAGCCGACGTACATAAAGAGAATCATTTCGTCTGCACATGTTTCA TCTCAGATGACCAGGGTAAAACCTGGCGACAGTCGAAAGGGAAAGTTGAT TACGCCCGACGCGGAGCGATGGAACCGGAA
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig105683:3..632+

>mRNA_M-pyrifera_M_contig105683.1220.1 ID=mRNA_M-pyrifera_M_contig105683.1220.1|Name=mRNA_M-pyrifera_M_contig105683.1220.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1260bp|location=Sequence derived from alignment at M-pyrifera_M_contig105683:3..632+ (Macrocystis pyrifera P11B4 male)
GCACTGATCGTGCTGGCAAAGGCTGAGCCACCCAAAGACGAGATTATCGT
CACCGACGTGTATGAAGCTTCGAAAGAGTATCCCCGCTACAGTGAAGGTT
CGATCCTGCCTTTAAACGATGGTTCGCTGCTCTTCGCGACAACACAGTTT
ATCGGCAGCGGTTCCGATTTCGCGACGGCCCGGATCATTGCGAAAAAGTC
AACTGACGGTGGACGCACCTGGAGCAAACCACGCGTCCTGCAGGAAAATA
CGGGGAAGAAGAATGTCATGTCGGCCACGCTGCGTTACCTGGCTGGCCCC
GAGCATGAACAGCGACCGATTGGTCTGTTCTATCTGAAAAAGAATACGCT
ATCGGACCTGAAGGCGTACCTTAAGATTTCCAGTGACAATGGAAAGACAT
TTGGACCGCCGACCGAGATTACGACTCCCCCCGGGTATCACGTGATGAAC
AATGACCGGATTACGATTCTCTCCACTGGACGCTGGCTGGCCCCCGTGGC
TTCGACAGCCGACGTACATAAAGAGAATCATTTCGTCTGCACATGTTTCA
TCTCAGATGACCAGGGTAAAACCTGGCGACAGTCGAAAGGGAAAGTTGAT
TACGCCCGACGCGGAGCGATGGAACCGGAAGCACTGATCGTGCTGGCAAA
GGCTGAGCCACCCAAAGACGAGATTATCGTCACCGACGTGTATGAAGCTT
CGAAAGAGTATCCCCGCTACAGTGAAGGTTCGATCCTGCCTTTAAACGAT
GGTTCGCTGCTCTTCGCGACAACACAGTTTATCGGCAGCGGTTCCGATTT
CGCGACGGCCCGGATCATTGCGAAAAAGTCAACTGACGGTGGACGCACCT
GGAGCAAACCACGCGTCCTGCAGGAAAATACGGGGAAGAAGAATGTCATG
TCGGCCACGCTGCGTTACCTGGCTGGCCCCGAGCATGAACAGCGACCGAT
TGGTCTGTTCTATCTGAAAAAGAATACGCTATCGGACCTGAAGGCGTACC
TTAAGATTTCCAGTGACAATGGAAAGACATTTGGACCGCCGACCGAGATT
ACGACTCCCCCCGGGTATCACGTGATGAACAATGACCGGATTACGATTCT
CTCCACTGGACGCTGGCTGGCCCCCGTGGCTTCGACAGCCGACGTACATA
AAGAGAATCATTTCGTCTGCACATGTTTCATCTCAGATGACCAGGGTAAA
ACCTGGCGACAGTCGAAAGGGAAAGTTGATTACGCCCGACGCGGAGCGAT
GGAACCGGAA
back to top