mRNA_M-pyrifera_M_contig105679.1217.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig105679.1217.1
Unique NamemRNA_M-pyrifera_M_contig105679.1217.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig105679.1217.1 vs. uniprot
Match: W7TWG8_9STRA (Nrap protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TWG8_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 5.840e-17
Identity = 34/58 (58.62%), Postives = 44/58 (75.86%), Query Frame = 1
Query:   25 RGWLWVCVRVHPSNSLRQVLRGPPSSETVKAQAFRALWGPKAELRRFRDGALLESAVW 198
            RGW+WV + + P  +LR V RGPP+ E  KA+ FRA WG KAELRRF+DGA++E+ VW
Sbjct:  405 RGWVWVGISIDPMQALRLVDRGPPAEEETKAREFRAFWGQKAELRRFKDGAIVEAVVW 462          
BLAST of mRNA_M-pyrifera_M_contig105679.1217.1 vs. uniprot
Match: A0A4D9D5Y6_9STRA (Uncharacterized protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D5Y6_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 5.870e-17
Identity = 34/58 (58.62%), Postives = 44/58 (75.86%), Query Frame = 1
Query:   25 RGWLWVCVRVHPSNSLRQVLRGPPSSETVKAQAFRALWGPKAELRRFRDGALLESAVW 198
            RGW+WV + + P  +LR V RGPP+ E  KA+ FRA WG KAELRRF+DGA++E+ VW
Sbjct:  673 RGWVWVGISIDPMQALRLVDRGPPAEEETKAREFRAFWGQKAELRRFKDGAIVEAVVW 730          
BLAST of mRNA_M-pyrifera_M_contig105679.1217.1 vs. uniprot
Match: A0A5A8CC89_CAFRO (Uncharacterized protein n=4 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CC89_CAFRO)

HSP 1 Score: 80.1 bits (196), Expect = 1.330e-15
Identity = 37/82 (45.12%), Postives = 54/82 (65.85%), Query Frame = 1
Query:   37 WVCVRVHPSNSLRQVLRGPPSSE------TVKAQAFRALWGPKAELRRFRDGALLESAVWPHVEGRECGILMRMVTHLLVMH 264
            WVC+R+ PS + +  +RGP + +         A AFRALWGPKA+LRRF+DGA++ESAV+   +     + +R+ THLL +H
Sbjct:  760 WVCLRLDPSAAFKATVRGPAAGDGSGRRAQQAAAAFRALWGPKAQLRRFKDGAVVESAVFGGPDTHRTAVPLRIATHLLALH 841          
BLAST of mRNA_M-pyrifera_M_contig105679.1217.1 vs. uniprot
Match: A0A433DCS4_9FUNG (U3 small nucleolar RNA-associated protein 22 n=2 Tax=Jimgerdemannia flammicorona TaxID=994334 RepID=A0A433DCS4_9FUNG)

HSP 1 Score: 74.7 bits (182), Expect = 1.040e-13
Identity = 35/78 (44.87%), Postives = 53/78 (67.95%), Query Frame = 1
Query:   34 LWVCVRVHPSNSLRQVLRGPPSSETVKAQAFRALWGPKAELRRFRDGALLESAVWPHVEGRECGILM-RMVTHLLVMH 264
            L + + ++P ++ R V +GPP+ +   + AFR LWG KAELRRF+DG++LES VW   +  E G+++ R V HLL +H
Sbjct:  606 LIIGIILNPEHATRLVDQGPPAEDATASAAFRQLWGDKAELRRFKDGSILESVVWDAKDTEERGLIVGRAVQHLLQLH 683          
BLAST of mRNA_M-pyrifera_M_contig105679.1217.1 vs. uniprot
Match: A0A8E2F1T6_9PEZI (U3 small nucleolar RNA-associated protein 22 (Fragment) n=1 Tax=Glonium stellatum TaxID=574774 RepID=A0A8E2F1T6_9PEZI)

HSP 1 Score: 73.2 bits (178), Expect = 3.580e-13
Identity = 41/92 (44.57%), Postives = 52/92 (56.52%), Query Frame = 1
Query:    1 WEVEDEPP----RGWLWVCVRVHPSNSLRQVLRGPPSSETVKAQAFRALWGPKAELRRFRDGALLESAVWPHVEGRECGILMRMVTHLLVMH 264
            W+V    P     G + V     P+N  R V  GPP+    +A +FR  WG KAELRRF+DG++LES VW   EG E  IL ++V HLL  H
Sbjct:  532 WQVGSAKPSEDREGRILVGFITDPANVARTVDHGPPAENKKEAASFRQFWGEKAELRRFKDGSILESTVWSLKEGGE-SILGQIVKHLLRRH 622          
BLAST of mRNA_M-pyrifera_M_contig105679.1217.1 vs. uniprot
Match: A0A6A5XF76_9PLEO (U3 small nucleolar RNA-associated protein 22 n=1 Tax=Aaosphaeria arxii CBS 175.79 TaxID=1450172 RepID=A0A6A5XF76_9PLEO)

HSP 1 Score: 72.8 bits (177), Expect = 4.920e-13
Identity = 34/75 (45.33%), Postives = 47/75 (62.67%), Query Frame = 1
Query:   40 VCVRVHPSNSLRQVLRGPPSSETVKAQAFRALWGPKAELRRFRDGALLESAVWPHVEGRECGILMRMVTHLLVMH 264
            V + + PSN+ R V  GPP+ +   A +FR  WG KAELRRF+DG++LES VWP        IL +++ H+L  H
Sbjct:  591 VSLAIDPSNAYRSVDHGPPAEDKKAAASFRQFWGEKAELRRFKDGSILESVVWP--VSNNSSILEQIIRHVLDRH 663          
BLAST of mRNA_M-pyrifera_M_contig105679.1217.1 vs. uniprot
Match: A0A316VQF0_9BASI (U3 small nucleolar RNA-associated protein 22 n=1 Tax=Ceraceosorus guamensis TaxID=1522189 RepID=A0A316VQF0_9BASI)

HSP 1 Score: 72.4 bits (176), Expect = 6.720e-13
Identity = 35/89 (39.33%), Postives = 51/89 (57.30%), Query Frame = 1
Query:    1 WEVED-EPPRGWLWVCVRVHPSNSLRQVLRGPPSSETVKAQAFRALWGPKAELRRFRDGALLESAVWPHVEGRECGILMRMVTHLLVMH 264
            W ++   P    + + + +   ++LR V  GPP  +   AQ+F+  WG  +ELRRFRDG +LES VWP  EGR   I  ++V H+L  H
Sbjct:  599 WSIDSPRPSNNTVELALVLDAEHALRLVEHGPPPEDAAAAQSFKQFWGDLSELRRFRDGRILESVVWPAAEGR-ARIPRKIVEHILARH 686          
BLAST of mRNA_M-pyrifera_M_contig105679.1217.1 vs. uniprot
Match: A0A433PYU5_9FUNG (U3 small nucleolar RNA-associated protein 22 n=1 Tax=Endogone sp. FLAS-F59071 TaxID=2340872 RepID=A0A433PYU5_9FUNG)

HSP 1 Score: 72.0 bits (175), Expect = 9.190e-13
Identity = 38/102 (37.25%), Postives = 58/102 (56.86%), Query Frame = 1
Query:    7 VEDEPPRGW---------------LWVCVRVHPSNSLRQVLRGPPSSETVKAQAFRALWGPKAELRRFRDGALLESAVWPHVEGRECGILM-RMVTHLLVMH 264
            V+ E PR W               L + + ++P +++R V +GPP+ +T  +  FR LWG KAELRRF+DG++LES VW      E  +++ R V +LL +H
Sbjct:  604 VQQELPRNWAISKPPTFKDLSTATLTIGLILNPEHAVRLVDQGPPAEDTAASNEFRKLWGNKAELRRFKDGSILESVVWDAKGAEERNLIVGRAVQYLLQLH 705          
BLAST of mRNA_M-pyrifera_M_contig105679.1217.1 vs. uniprot
Match: A0A0L0D852_THETB (Uncharacterized protein n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0D852_THETB)

HSP 1 Score: 71.6 bits (174), Expect = 1.250e-12
Identity = 34/77 (44.16%), Postives = 48/77 (62.34%), Query Frame = 1
Query:   34 LWVCVRVHPSNSLRQVLRGPPSSETVKAQAFRALWGPKAELRRFRDGALLESAVWPHVEGRECGILMRMVTHLLVMH 264
            LW+ +R+ P +S+  V  GP +     A+AFRA WG KAELRRF DG++ E+ VW   E  +  I+  +V HLL +H
Sbjct:  494 LWIGLRLAPLHSIGIVDMGPSADSGELAEAFRAFWGAKAELRRFVDGSICEAVVWSKYENHQEAIVGAVVKHLLKLH 570          
BLAST of mRNA_M-pyrifera_M_contig105679.1217.1 vs. uniprot
Match: A0A7R9U8W3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U8W3_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 1.710e-12
Identity = 32/77 (41.56%), Postives = 50/77 (64.94%), Query Frame = 1
Query:   34 LWVCVRVHPSNSLRQVLRGPPSSETVKAQAFRALWGPKAELRRFRDGALLESAVWPHVEGRECGILMRMVTHLLVMH 264
            LW  +R+  + + R V RGP +++   A+AF++LWG KAELRRF+DG+L+E+ VW +       +L  +V H+L  H
Sbjct:  658 LWFGLRLDLATAGRHVDRGPDAADREAAKAFQSLWGSKAELRRFKDGSLVETVVWGNNTAPRSAVLREIVEHVLATH 734          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig105679.1217.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
W7TWG8_9STRA5.840e-1758.62Nrap protein n=1 Tax=Nannochloropsis gaditana TaxI... [more]
A0A4D9D5Y6_9STRA5.870e-1758.62Uncharacterized protein n=3 Tax=Monodopsidaceae Ta... [more]
A0A5A8CC89_CAFRO1.330e-1545.12Uncharacterized protein n=4 Tax=Cafeteria roenberg... [more]
A0A433DCS4_9FUNG1.040e-1344.87U3 small nucleolar RNA-associated protein 22 n=2 T... [more]
A0A8E2F1T6_9PEZI3.580e-1344.57U3 small nucleolar RNA-associated protein 22 (Frag... [more]
A0A6A5XF76_9PLEO4.920e-1345.33U3 small nucleolar RNA-associated protein 22 n=1 T... [more]
A0A316VQF0_9BASI6.720e-1339.33U3 small nucleolar RNA-associated protein 22 n=1 T... [more]
A0A433PYU5_9FUNG9.190e-1337.25U3 small nucleolar RNA-associated protein 22 n=1 T... [more]
A0A0L0D852_THETB1.250e-1244.16Uncharacterized protein n=1 Tax=Thecamonas trahens... [more]
A0A7R9U8W3_9STRA1.710e-1241.56Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig105679contigM-pyrifera_M_contig105679:367..630 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score71.2
Seed ortholog evalue2.6e-10
Seed eggNOG ortholog529818.AMSG_04963T0
Preferred nameNOL6
KEGG koko:K08018,ko:K14544
KEGG Pathwayko03008,ko04010,ko04015,ko04530,map03008,map04010,map04015,map04530
Hectar predicted targeting categoryother localisation
GOsGO:0000228,GO:0000793,GO:0000794,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005730,GO:0005737,GO:0005739,GO:0006139,GO:0006364,GO:0006396,GO:0006403,GO:0006405,GO:0006409,GO:0006611,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0008104,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0015031,GO:0015833,GO:0015931,GO:0016070,GO:0016072,GO:0022613,GO:0030684,GO:0030686,GO:0031503,GO:0031974,GO:0031981,GO:0032040,GO:0032545,GO:0032991,GO:0033036,GO:0034456,GO:0034470,GO:0034613,GO:0034641,GO:0034660,GO:0042254,GO:0042886,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044452,GO:0044464,GO:0045184,GO:0046483,GO:0046907,GO:0050657,GO:0050658,GO:0051031,GO:0051168,GO:0051169,GO:0051179,GO:0051234,GO:0051236,GO:0051641,GO:0051649,GO:0070013,GO:0070727,GO:0071166,GO:0071426,GO:0071431,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0090304,GO:0097064,GO:0097159,GO:1901360,GO:1901363,GO:1990904
EggNOG free text desc.tRNA export from nucleus
EggNOG OGsKOG2054@1,KOG2054@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03009
Exons1
Model size264
Cds size264
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815565.5189047-CDS-M-pyrifera_M_contig105679:366..6301622815565.5189047-CDS-M-pyrifera_M_contig105679:366..630Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig105679 367..630 +
1692277466.270497-CDS-M-pyrifera_M_contig105679:366..6301692277466.270497-CDS-M-pyrifera_M_contig105679:366..630Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig105679 367..630 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig105679.1217.1prot_M-pyrifera_M_contig105679.1217.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig105679 367..630 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig105679.1217.1

>prot_M-pyrifera_M_contig105679.1217.1 ID=prot_M-pyrifera_M_contig105679.1217.1|Name=mRNA_M-pyrifera_M_contig105679.1217.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=88bp
WEVEDEPPRGWLWVCVRVHPSNSLRQVLRGPPSSETVKAQAFRALWGPKA
ELRRFRDGALLESAVWPHVEGRECGILMRMVTHLLVMH
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mRNA from alignment at M-pyrifera_M_contig105679:367..630+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig105679.1217.1 ID=mRNA_M-pyrifera_M_contig105679.1217.1|Name=mRNA_M-pyrifera_M_contig105679.1217.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=264bp|location=Sequence derived from alignment at M-pyrifera_M_contig105679:367..630+ (Macrocystis pyrifera P11B4 male)
TGGGAAGTAGAAGATGAACCACCACGTGGATGGTTGTGGGTATGTGTGAG AGTACACCCATCAAACTCCTTGCGACAAGTTTTGCGTGGCCCTCCATCAT CCGAGACTGTCAAAGCACAAGCATTTCGAGCATTGTGGGGACCAAAAGCA GAGCTTCGACGATTTCGGGATGGAGCATTGTTGGAATCGGCAGTATGGCC TCATGTTGAAGGACGAGAGTGTGGAATCTTGATGCGAATGGTGACACATT TGCTTGTAATGCAT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig105679:367..630+

>mRNA_M-pyrifera_M_contig105679.1217.1 ID=mRNA_M-pyrifera_M_contig105679.1217.1|Name=mRNA_M-pyrifera_M_contig105679.1217.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=528bp|location=Sequence derived from alignment at M-pyrifera_M_contig105679:367..630+ (Macrocystis pyrifera P11B4 male)
TGGGAAGTAGAAGATGAACCACCACGTGGATGGTTGTGGGTATGTGTGAG
AGTACACCCATCAAACTCCTTGCGACAAGTTTTGCGTGGCCCTCCATCAT
CCGAGACTGTCAAAGCACAAGCATTTCGAGCATTGTGGGGACCAAAAGCA
GAGCTTCGACGATTTCGGGATGGAGCATTGTTGGAATCGGCAGTATGGCC
TCATGTTGAAGGACGAGAGTGTGGAATCTTGATGCGAATGGTGACACATT
TGCTTGTAATGCATTGGGAAGTAGAAGATGAACCACCACGTGGATGGTTG
TGGGTATGTGTGAGAGTACACCCATCAAACTCCTTGCGACAAGTTTTGCG
TGGCCCTCCATCATCCGAGACTGTCAAAGCACAAGCATTTCGAGCATTGT
GGGGACCAAAAGCAGAGCTTCGACGATTTCGGGATGGAGCATTGTTGGAA
TCGGCAGTATGGCCTCATGTTGAAGGACGAGAGTGTGGAATCTTGATGCG
AATGGTGACACATTTGCTTGTAATGCAT
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