mRNA_M-pyrifera_M_contig105670.1214.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig105670.1214.1
Unique NamemRNA_M-pyrifera_M_contig105670.1214.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig105670.1214.1 vs. uniprot
Match: A0A6B1GC46_9ACTN (Uncharacterized protein n=2 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A6B1GC46_9ACTN)

HSP 1 Score: 169 bits (427), Expect = 1.040e-48
Identity = 89/143 (62.24%), Postives = 106/143 (74.13%), Query Frame = 1 
Query:    1 VCSFNVAALAWECIEFGERIDEALFRFYDYAATELAKRLTADPAGVSPAIKVKDRDLAVKRFRKTADQIALAIDAGHDEAKVREALSEFGVFWKLIDPPSGSSASALHGAIASGTAVSVTSRGSLDTSLSGSATLVKPTRSYG 429
            VCSFN+AALAWEC+E  E +D AL RFY++AA+ LAK LT+DPAGVS  IKV DR+LAVKRFRK AD IALAIDAG D  KV + LS  G+FWKLI P   S A+A+H AI+ G ++S+T  G+L      SAT VK TRSYG
Sbjct:  198 VCSFNIAALAWECVELAEPLDRALLRFYEHAASSLAKHLTSDPAGVSAPIKVADRNLAVKRFRKVADAIALAIDAGDDGEKVHDVLSATGIFWKLIQPSLPSDAAAVHQAISDGGSLSMTKAGTLVAGTGASATPVKSTRSYG 340
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BLAST of mRNA_M-pyrifera_M_contig105670.1214.1 vs. uniprot
Match: A0A7X3V6M6_9CHLR (Uncharacterized protein n=1 Tax=Dehalococcoidia bacterium TaxID=2026734 RepID=A0A7X3V6M6_9CHLR)

HSP 1 Score: 66.6 bits (161), Expect = 4.420e-10
Identity = 38/89 (42.70%), Postives = 53/89 (59.55%), Query Frame = 1 
Query:    1 VCSFNVAALAWECIEFGERIDEALFRFYDYAATELAKRLTADPAGVSPAIK-VKDRDLAVKRFRKTADQIALAIDAGHDEAKVREALSE 264
            +CSFN+ ALA   +E G  +  AL  F++  A +L +RLT DPA VSP IK +  R+ A KR R+  + +  A+D    E  VR ALS+
Sbjct:  198 LCSFNLEALALLYVEDGTGLAVALAEFFENGAADLERRLTPDPAEVSPPIKTLLPREAAAKRLRRAGELVREALDNDEHECLVRAALSQ 286
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BLAST of mRNA_M-pyrifera_M_contig105670.1214.1 vs. uniprot
Match: UPI001E515C5E (hypothetical protein n=1 Tax=Actinomycetospora endophytica TaxID=2291215 RepID=UPI001E515C5E)

HSP 1 Score: 64.7 bits (156), Expect = 2.290e-9
Identity = 51/145 (35.17%), Postives = 70/145 (48.28%), Query Frame = 1 
Query:    1 VCSFNVAALAWECIEFGERIDEALFRFYDYAATELAKRLTADPAGVSPAIKVKDRDLAVKRFRKTADQIALAIDAGHDEAKVREALSEFGVFWK-LIDPPSGSSASALHGAIASGTAVSVTSRG-SLDTSLSGSATLVKPTRSYG 429
            +CSFN+ A     +E      EAL   +   A +L +RLT DPA VS AIKV DRD AV R    A  +  A++   DE  VR+AL+     W   +    G S + +   + +G ++S    G S   + S    L K  RSYG
Sbjct:  226 LCSFNIEAFGLMFVEGAMAEPEALLALWSQGAKDLRRRLTPDPAKVSGAIKVADRDRAVHRLEVAAGALKDALEHDDDEPYVRKALAPL---WPDYVATAGGDSKARIAATVRAGESLSFGRTGLSGSPAASTGVALTKRPRSYG 367
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BLAST of mRNA_M-pyrifera_M_contig105670.1214.1 vs. uniprot
Match: A0A7J9W767_9PSEU (Uncharacterized protein n=1 Tax=Pseudonocardiaceae bacterium TaxID=1873463 RepID=A0A7J9W767_9PSEU)

HSP 1 Score: 54.3 bits (129), Expect = 6.040e-6
Identity = 36/96 (37.50%), Postives = 52/96 (54.17%), Query Frame = 1 
Query:    7 SFNVAALAWECIEFGERIDEALFRFYDYAATELAKRLTADPAGVSPAIKVK-DRDLAVKRFRKTADQIALAIDAGHDEAKVREALSEFGVFWKLID 291
            S+N+ ALA ECI     +   L  F+ +AA EL +RLT DPA V+  I+    RD AV R R+  D +  A+    ++A  R A ++  + W L D
Sbjct:  106 SWNIKALALECITTPMPLSRGLQVFFTHAARELDRRLTPDPADVAGPIQPNLPRDQAVTRLRRARDIVTEALT---EQAAGRHASAQQKLHWLLPD 198
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig105670.1214.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6B1GC46_9ACTN1.040e-4862.24Uncharacterized protein n=2 Tax=Acidimicrobiales b... [more]
A0A7X3V6M6_9CHLR4.420e-1042.70Uncharacterized protein n=1 Tax=Dehalococcoidia ba... [more]
UPI001E515C5E2.290e-935.17hypothetical protein n=1 Tax=Actinomycetospora end... [more]
A0A7J9W767_9PSEU6.040e-637.50Uncharacterized protein n=1 Tax=Pseudonocardiaceae... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig105670contigM-pyrifera_M_contig105670:180..629 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score62.4
Seed ortholog evalue2.1e-07
Seed eggNOG ortholog1380347.JNII01000006_gene1857
Hectar predicted targeting categoryother localisation
EggNOG OGs2F3Z3@1,2IG4D@201174,33WR0@2
Best tax levelActinobacteria
Best eggNOG OGNA|NA|NA
Exons1
Model size450
Cds size450
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815565.391834-CDS-M-pyrifera_M_contig105670:179..6291622815565.391834-CDS-M-pyrifera_M_contig105670:179..629Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig105670 180..629 -
1692277466.22577-CDS-M-pyrifera_M_contig105670:179..6291692277466.22577-CDS-M-pyrifera_M_contig105670:179..629Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig105670 180..629 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig105670.1214.1prot_M-pyrifera_M_contig105670.1214.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig105670 180..629 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig105670.1214.1

>prot_M-pyrifera_M_contig105670.1214.1 ID=prot_M-pyrifera_M_contig105670.1214.1|Name=mRNA_M-pyrifera_M_contig105670.1214.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=150bp
VCSFNVAALAWECIEFGERIDEALFRFYDYAATELAKRLTADPAGVSPAI
KVKDRDLAVKRFRKTADQIALAIDAGHDEAKVREALSEFGVFWKLIDPPS
GSSASALHGAIASGTAVSVTSRGSLDTSLSGSATLVKPTRSYGSHGPVG*
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mRNA from alignment at M-pyrifera_M_contig105670:180..629-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig105670.1214.1 ID=mRNA_M-pyrifera_M_contig105670.1214.1|Name=mRNA_M-pyrifera_M_contig105670.1214.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=450bp|location=Sequence derived from alignment at M-pyrifera_M_contig105670:180..629- (Macrocystis pyrifera P11B4 male)
GTCTGTTCGTTCAACGTCGCTGCTCTGGCGTGGGAGTGCATCGAGTTCGG
CGAACGGATCGACGAGGCGCTGTTTCGATTCTACGACTACGCAGCGACCG
AGCTGGCGAAGCGCCTGACCGCCGATCCGGCCGGGGTGAGCCCCGCGATC
AAGGTCAAGGATCGGGACCTCGCGGTCAAACGATTCCGAAAGACAGCAGA
TCAGATAGCGCTGGCGATTGACGCCGGTCATGACGAGGCCAAAGTGAGGG
AGGCGCTGAGCGAGTTCGGCGTGTTCTGGAAACTCATCGATCCGCCGTCG
GGGTCCTCGGCGAGCGCCCTGCACGGCGCGATCGCGTCAGGAACGGCCGT
GTCGGTGACCTCGAGGGGCTCGCTCGACACCTCGTTGTCGGGATCGGCGA
CGCTGGTGAAGCCCACTCGCTCCTACGGTAGTCATGGCCCGGTGGGATGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig105670:180..629-

>mRNA_M-pyrifera_M_contig105670.1214.1 ID=mRNA_M-pyrifera_M_contig105670.1214.1|Name=mRNA_M-pyrifera_M_contig105670.1214.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=900bp|location=Sequence derived from alignment at M-pyrifera_M_contig105670:180..629- (Macrocystis pyrifera P11B4 male)
GTCTGTTCGTTCAACGTCGCTGCTCTGGCGTGGGAGTGCATCGAGTTCGG
CGAACGGATCGACGAGGCGCTGTTTCGATTCTACGACTACGCAGCGACCG
AGCTGGCGAAGCGCCTGACCGCCGATCCGGCCGGGGTGAGCCCCGCGATC
AAGGTCAAGGATCGGGACCTCGCGGTCAAACGATTCCGAAAGACAGCAGA
TCAGATAGCGCTGGCGATTGACGCCGGTCATGACGAGGCCAAAGTGAGGG
AGGCGCTGAGCGAGTTCGGCGTGTTCTGGAAACTCATCGATCCGCCGTCG
GGGTCCTCGGCGAGCGCCCTGCACGGCGCGATCGCGTCAGGAACGGCCGT
GTCGGTGACCTCGAGGGGCTCGCTCGACACCTCGTTGTCGGGATCGGCGA
CGCTGGTGAAGCCCACTCGCTCCTACGGTAGTCATGGCCCGGTGGGATGA
GTCTGTTCGTTCAACGTCGCTGCTCTGGCGTGGGAGTGCATCGAGTTCGG
CGAACGGATCGACGAGGCGCTGTTTCGATTCTACGACTACGCAGCGACCG
AGCTGGCGAAGCGCCTGACCGCCGATCCGGCCGGGGTGAGCCCCGCGATC
AAGGTCAAGGATCGGGACCTCGCGGTCAAACGATTCCGAAAGACAGCAGA
TCAGATAGCGCTGGCGATTGACGCCGGTCATGACGAGGCCAAAGTGAGGG
AGGCGCTGAGCGAGTTCGGCGTGTTCTGGAAACTCATCGATCCGCCGTCG
GGGTCCTCGGCGAGCGCCCTGCACGGCGCGATCGCGTCAGGAACGGCCGT
GTCGGTGACCTCGAGGGGCTCGCTCGACACCTCGTTGTCGGGATCGGCGA
CGCTGGTGAAGCCCACTCGCTCCTACGGTAGTCATGGCCCGGTGGGATGA
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