mRNA_M-pyrifera_M_contig105663.1212.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig105663.1212.1
Unique NamemRNA_M-pyrifera_M_contig105663.1212.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig105663.1212.1 vs. uniprot
Match: A0A225WX57_9STRA (Fe2OG dioxygenase domain-containing protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WX57_9STRA)

HSP 1 Score: 112 bits (280), Expect = 2.680e-27
Identity = 53/112 (47.32%), Postives = 72/112 (64.29%), Query Frame = 1
Query:    1 GWTRARHKSYPTVDLPVRDIPAVSRWCNNLLESRVFPFLREQYKFLQTDRFWVQDLFIVKYEANTDMGMSSLAIHRDGALLSFNILLNPATDFVGGHTYFEALRGVVPMHQG 336
            GW + RH SY T D+P   + A++ W  + L  R+FP + ++YK  +T R   +DLF VKYEA      S LA+HRDG++LSFN+LLN A DF GG TYF+A +  V + QG
Sbjct:  241 GWCKERHASYQTTDMPCHQVAALNSWVRSTLADRLFPQVAKRYKLPKTQRLLFRDLFFVKYEARKGE-RSELALHRDGSVLSFNVLLNSADDFTGGGTYFDATKLTVRISQG 351          
BLAST of mRNA_M-pyrifera_M_contig105663.1212.1 vs. uniprot
Match: D0MZY8_PHYIT (Fe2OG dioxygenase domain-containing protein n=2 Tax=Phytophthora infestans TaxID=4787 RepID=D0MZY8_PHYIT)

HSP 1 Score: 111 bits (278), Expect = 1.180e-26
Identity = 53/112 (47.32%), Postives = 71/112 (63.39%), Query Frame = 1
Query:    1 GWTRARHKSYPTVDLPVRDIPAVSRWCNNLLESRVFPFLREQYKFLQTDRFWVQDLFIVKYEANTDMGMSSLAIHRDGALLSFNILLNPATDFVGGHTYFEALRGVVPMHQG 336
            GW + RH SY T D+P   + A++ W  + LE R+FP + ++Y+   T R    DLF VKYEA      S LA+HRDG++LSFNILLN A DF GG TYF++ +  V + QG
Sbjct:  317 GWCKERHASYQTTDMPCHQVAALNSWVRSTLEDRLFPQIAKRYELPTTKRLLFHDLFFVKYEARKGE-RSELALHRDGSVLSFNILLNSADDFTGGGTYFDSTKRTVHITQG 427          
BLAST of mRNA_M-pyrifera_M_contig105663.1212.1 vs. uniprot
Match: A0A329SZ59_9STRA (Fe2OG dioxygenase domain-containing protein n=8 Tax=Phytophthora TaxID=4783 RepID=A0A329SZ59_9STRA)

HSP 1 Score: 110 bits (276), Expect = 2.270e-26
Identity = 52/112 (46.43%), Postives = 72/112 (64.29%), Query Frame = 1
Query:    1 GWTRARHKSYPTVDLPVRDIPAVSRWCNNLLESRVFPFLREQYKFLQTDRFWVQDLFIVKYEANTDMGMSSLAIHRDGALLSFNILLNPATDFVGGHTYFEALRGVVPMHQG 336
            GW + RH SY T D+P   + A++ W  + L  R+FP + ++Y+  +T R   +DLF VKYEA      S LA+HRDG++LSFN+LLN A DF GG TYF+A +  V + QG
Sbjct:  317 GWCKERHASYQTTDMPCHQVAALNSWVRSALADRLFPQIAKRYQLPKTKRLLFRDLFFVKYEARRGE-RSELALHRDGSVLSFNLLLNSADDFTGGGTYFDATKHTVHITQG 427          
BLAST of mRNA_M-pyrifera_M_contig105663.1212.1 vs. uniprot
Match: H3GJ77_PHYRM (Fe2OG dioxygenase domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GJ77_PHYRM)

HSP 1 Score: 108 bits (270), Expect = 1.610e-25
Identity = 51/112 (45.54%), Postives = 69/112 (61.61%), Query Frame = 1
Query:    1 GWTRARHKSYPTVDLPVRDIPAVSRWCNNLLESRVFPFLREQYKFLQTDRFWVQDLFIVKYEANTDMGMSSLAIHRDGALLSFNILLNPATDFVGGHTYFEALRGVVPMHQG 336
            GW + RH SY T D+P   +  ++ W    L  R+FP + ++YK  +  R   +DLF VKYEA      S LA+HRDG++LSFN+LLN A DF GG TYF+A +  V + QG
Sbjct:  318 GWCKERHASYQTTDMPCHHVAGLNSWVRATLADRLFPQIAKRYKLPKNQRLLFRDLFFVKYEARNGE-RSELALHRDGSVLSFNVLLNSADDFTGGGTYFDATKRTVHITQG 428          
BLAST of mRNA_M-pyrifera_M_contig105663.1212.1 vs. uniprot
Match: A0A3M6VAF2_9STRA (Fe2OG dioxygenase domain-containing protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VAF2_9STRA)

HSP 1 Score: 108 bits (269), Expect = 2.160e-25
Identity = 52/113 (46.02%), Postives = 73/113 (64.60%), Query Frame = 1
Query:    1 GWTRARHKSYPTVDLPVRDIPAVSRWCNNLLESRVFPFLREQYKFLQTDRFWVQDLFIVKYEANTDMG-MSSLAIHRDGALLSFNILLNPATDFVGGHTYFEALRGVVPMHQG 336
            GW   RH SY T D+P   + +++ W  + L SR+FP + ++YK L+  R   +DLF VKYEA   MG  S LA+HRDG++LSFN+LLN A +F GG T F+A +  + + QG
Sbjct:  314 GWCTERHASYQTTDMPCHQVASLNSWVRSTLASRLFPQIAKRYKLLKLQRLLFRDLFFVKYEAR--MGERSDLALHRDGSVLSFNVLLNSAHEFTGGGTCFDATKRTIHISQG 424          
BLAST of mRNA_M-pyrifera_M_contig105663.1212.1 vs. uniprot
Match: G4YIN7_PHYSP (Fe2OG dioxygenase domain-containing protein n=5 Tax=Phytophthora TaxID=4783 RepID=G4YIN7_PHYSP)

HSP 1 Score: 107 bits (268), Expect = 3.100e-25
Identity = 51/112 (45.54%), Postives = 70/112 (62.50%), Query Frame = 1
Query:    1 GWTRARHKSYPTVDLPVRDIPAVSRWCNNLLESRVFPFLREQYKFLQTDRFWVQDLFIVKYEANTDMGMSSLAIHRDGALLSFNILLNPATDFVGGHTYFEALRGVVPMHQG 336
            GW + RH SY T D+P   +  ++ W    L  R+FP + ++YK  ++ R   +DLF VKYEA      S LA+HRDG++LSFN+LLN A DF GG TYF+A +  V + QG
Sbjct:  319 GWCKERHASYQTTDMPCHHVAGLNSWVRATLADRLFPQIAKRYKLPKSKRLLFRDLFFVKYEARKGE-RSELALHRDGSVLSFNLLLNSADDFTGGGTYFDATKHTVHITQG 429          
BLAST of mRNA_M-pyrifera_M_contig105663.1212.1 vs. uniprot
Match: A0A0P1B267_PLAHL (Procollagen-2-oxoglutarate 5-dioxygenase n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1B267_PLAHL)

HSP 1 Score: 105 bits (263), Expect = 4.760e-25
Identity = 48/104 (46.15%), Postives = 68/104 (65.38%), Query Frame = 1
Query:    1 GWTRARHKSYPTVDLPVRDIPAVSRWCNNLLESRVFPFLREQYKFLQTDRFWVQDLFIVKYEANTDMGMSSLAIHRDGALLSFNILLNPATDFVGGHTYFEALR 312
            GW + RH SY T D+P   +P +S W  + L  R+FP + ++YK  +T+R   +DLF VKYEA +    S+L +HRDG++LSFNILLN    F GG TYF++ +
Sbjct:  237 GWCKERHTSYQTTDMPCHQVPTLSSWICSTLTDRMFPQITQRYKLSRTERLSFRDLFFVKYEARSGE-RSNLELHRDGSILSFNILLNSTDAFTGGGTYFDSTK 339          
BLAST of mRNA_M-pyrifera_M_contig105663.1212.1 vs. uniprot
Match: A0A7S2NU43_9STRA (Hypothetical protein (Fragment) n=2 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2NU43_9STRA)

HSP 1 Score: 104 bits (259), Expect = 7.440e-25
Identity = 47/114 (41.23%), Postives = 76/114 (66.67%), Query Frame = 1
Query:    1 GWTRARHKSYPTVDLPVRDIPAVSRWCNNLLESRVFPFLREQYKFLQTD--RFWVQDLFIVKYEANTDMGMSSLAIHRDGALLSFNILLNPATDFVGGHTYFEALRGVVPMHQG 336
            GWT +RH +YPT D+PV ++   + +    L +R++P LR+Q++ +  D  +  V D F+VKY+A  + G + L  HRDG++LSFN+ LNPA++F GG T+F++L   + + QG
Sbjct:  145 GWTTSRHANYPTTDIPVIELSQTTEFLREALHTRIYPLLRDQFRHILPDGRKLRVVDGFVVKYDA--EGGQTELKPHRDGSVLSFNVALNPASEFEGGGTWFDSLSNAIKIDQG 256          
BLAST of mRNA_M-pyrifera_M_contig105663.1212.1 vs. uniprot
Match: A0A7S2GRG3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2GRG3_9STRA)

HSP 1 Score: 101 bits (251), Expect = 3.960e-24
Identity = 52/114 (45.61%), Postives = 76/114 (66.67%), Query Frame = 1
Query:    1 GWTRARHKSYPTVDLPVRDIPAVSRWCNNLLESRVFPFLREQYK-FLQTDR-FWVQDLFIVKYEANTDMGMSSLAIHRDGALLSFNILLNPATDFVGGHTYFEALRGVVPMHQG 336
            GWT  RH +YPT D+P+ ++P+  ++    LE R++P LR+Q+  +L   R   V D FIVKY+A  + G + L  HRDG++LSFNI LNPA++F GG T+F++L   V + QG
Sbjct:   88 GWTTKRHGNYPTTDIPLAELPSTLKFLRRSLEERIYPLLRKQFGGYLPDGRALRVADGFIVKYDA--EGGQTELKPHRDGSVLSFNIALNPASEFDGGGTWFQSLGESVRIDQG 199          
BLAST of mRNA_M-pyrifera_M_contig105663.1212.1 vs. uniprot
Match: A0A662X346_9STRA (Fe2OG dioxygenase domain-containing protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662X346_9STRA)

HSP 1 Score: 104 bits (260), Expect = 4.630e-24
Identity = 49/112 (43.75%), Postives = 72/112 (64.29%), Query Frame = 1
Query:    1 GWTRARHKSYPTVDLPVRDIPAVSRWCNNLLESRVFPFLREQYKFLQTDRFWVQDLFIVKYEANTDMGMSSLAIHRDGALLSFNILLNPATDFVGGHTYFEALRGVVPMHQG 336
            GW + RH +YPT DLP   + A+  W  + L +R+FP + ++Y+  +  R   +DLF VKYEA  D   + LA+HRDG++LSFN+LLN A +F GG T+FE  +  V + +G
Sbjct:  337 GWCKQRHAAYPTTDLPCYRVAALDGWVRSSLAARLFPQIAKRYQLPKHQRLLFRDLFYVKYEAR-DGERAELALHRDGSVLSFNVLLNAAEEFTGGGTFFEETKRTVHITEG 447          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig105663.1212.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A225WX57_9STRA2.680e-2747.32Fe2OG dioxygenase domain-containing protein n=1 Ta... [more]
D0MZY8_PHYIT1.180e-2647.32Fe2OG dioxygenase domain-containing protein n=2 Ta... [more]
A0A329SZ59_9STRA2.270e-2646.43Fe2OG dioxygenase domain-containing protein n=8 Ta... [more]
H3GJ77_PHYRM1.610e-2545.54Fe2OG dioxygenase domain-containing protein n=1 Ta... [more]
A0A3M6VAF2_9STRA2.160e-2546.02Fe2OG dioxygenase domain-containing protein n=2 Ta... [more]
G4YIN7_PHYSP3.100e-2545.54Fe2OG dioxygenase domain-containing protein n=5 Ta... [more]
A0A0P1B267_PLAHL4.760e-2546.15Procollagen-2-oxoglutarate 5-dioxygenase n=1 Tax=P... [more]
A0A7S2NU43_9STRA7.440e-2541.23Hypothetical protein (Fragment) n=2 Tax=Leptocylin... [more]
A0A7S2GRG3_9STRA3.960e-2445.61Hypothetical protein (Fragment) n=1 Tax=Helicothec... [more]
A0A662X346_9STRA4.630e-2443.75Fe2OG dioxygenase domain-containing protein n=1 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig105663contigM-pyrifera_M_contig105663:5..401 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score111.3
Seed ortholog evalue2.9e-22
Seed eggNOG ortholog4787.PITG_03327T0
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Prolyl 4-hydroxylase alpha subunit homologues.
EggNOG OGs29D75@1,2RKAZ@2759,3Q93C@4776
COG Functional cat.S
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons2
Model size336
Cds size336
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815565.2555392-CDS-M-pyrifera_M_contig105663:4..1741622815565.2555392-CDS-M-pyrifera_M_contig105663:4..174Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig105663 5..174 +
1692277466.2002656-CDS-M-pyrifera_M_contig105663:4..1741692277466.2002656-CDS-M-pyrifera_M_contig105663:4..174Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig105663 5..174 +
1622815565.270055-CDS-M-pyrifera_M_contig105663:235..4011622815565.270055-CDS-M-pyrifera_M_contig105663:235..401Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig105663 236..401 +
1692277466.2090602-CDS-M-pyrifera_M_contig105663:235..4011692277466.2090602-CDS-M-pyrifera_M_contig105663:235..401Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig105663 236..401 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig105663.1212.1prot_M-pyrifera_M_contig105663.1212.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig105663 5..401 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig105663.1212.1

>prot_M-pyrifera_M_contig105663.1212.1 ID=prot_M-pyrifera_M_contig105663.1212.1|Name=mRNA_M-pyrifera_M_contig105663.1212.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=112bp
GWTRARHKSYPTVDLPVRDIPAVSRWCNNLLESRVFPFLREQYKFLQTDR
FWVQDLFIVKYEANTDMGMSSLAIHRDGALLSFNILLNPATDFVGGHTYF
EALRGVVPMHQG
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mRNA from alignment at M-pyrifera_M_contig105663:5..401+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig105663.1212.1 ID=mRNA_M-pyrifera_M_contig105663.1212.1|Name=mRNA_M-pyrifera_M_contig105663.1212.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=397bp|location=Sequence derived from alignment at M-pyrifera_M_contig105663:5..401+ (Macrocystis pyrifera P11B4 male)
GGTTGGACTCGTGCACGTCACAAGAGCTACCCCACCGTCGATCTGCCAGT CCGGGACATTCCTGCAGTGTCTCGCTGGTGCAACAACTTGCTGGAGTCTC GCGTTTTCCCCTTCCTTCGTGAGCAGTACAAGTTTCTCCAGACTGACCGT TTCTGGGTCCAAGATCTCTTGTACGTTCTCACAGACTTCCTCATACACCA CAGCGCGTACTCACCCTCCCTGCGTCCACAGCATCGTGAAGTACGAAGCC AACACGGACATGGGCATGTCTTCCCTCGCCATTCACCGTGATGGAGCTCT ACTGAGCTTCAACATCCTCTTGAACCCGGCCACCGACTTTGTGGGCGGCC ACACATACTTTGAGGCGCTGCGCGGTGTAGTCCCTATGCACCAAGGT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig105663:5..401+

>mRNA_M-pyrifera_M_contig105663.1212.1 ID=mRNA_M-pyrifera_M_contig105663.1212.1|Name=mRNA_M-pyrifera_M_contig105663.1212.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=672bp|location=Sequence derived from alignment at M-pyrifera_M_contig105663:5..401+ (Macrocystis pyrifera P11B4 male)
GGTTGGACTCGTGCACGTCACAAGAGCTACCCCACCGTCGATCTGCCAGT
CCGGGACATTCCTGCAGTGTCTCGCTGGTGCAACAACTTGCTGGAGTCTC
GCGTTTTCCCCTTCCTTCGTGAGCAGTACAAGTTTCTCCAGACTGACCGT
TTCTGGGTCCAAGATCTCTTGGTTGGACTCGTGCACGTCACAAGAGCTAC
CCCACCGTCGATCTGCCAGTCCGGGACATTCCTGCAGTGTCTCGCTGGTG
CAACAACTTGCTGGAGTCTCGCGTTTTCCCCTTCCTTCGTGAGCAGTACA
AGTTTCTCCAGACTGACCGTTTCTGGGTCCAAGATCTCTTCATCGTGAAG
TACGAAGCCAACACGGACATGGGCATGTCTTCCCTCGCCATTCACCGTGA
TGGAGCTCTACTGAGCTTCAACATCCTCTTGAACCCGGCCACCGACTTTG
TGGGCGGCCACACATACTTTGAGGCGCTGCGCGGTGTAGTCCCTATGCAC
CAAGGTCATCGTGAAGTACGAAGCCAACACGGACATGGGCATGTCTTCCC
TCGCCATTCACCGTGATGGAGCTCTACTGAGCTTCAACATCCTCTTGAAC
CCGGCCACCGACTTTGTGGGCGGCCACACATACTTTGAGGCGCTGCGCGG
TGTAGTCCCTATGCACCAAGGT
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