mRNA_M-pyrifera_M_contig10565.1207.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig10565.1207.1
Unique NamemRNA_M-pyrifera_M_contig10565.1207.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig10565.1207.1 vs. uniprot
Match: A0A6H5JQ14_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQ14_9PHAE)

HSP 1 Score: 224 bits (571), Expect = 1.020e-72
Identity = 115/158 (72.78%), Postives = 130/158 (82.28%), Query Frame = 1 
Query:    4 QRAARPLRVHFERGKLAAEDNVGLILFKKTVGVPRSFSAWQRRYFVLGGAVAKAHVLQVYVSKQSYDRMVLAVFERQRINERVKAYKLNTHFKCGPIK------------VRLYKGHPSAINFFSVKLPSTRLKQLNFASQSLAELQHLRTAMTRFAA 441
            Q AARPLRV FERG+L  EDNVG ILFKKTVGVPRSFSAWQRRYFVLGGAVAK HVLQVYVSKQSYDRMVLAVFE +RINERVKAYKL+  FKCGPIK            V+ +KGHP+ + FF+VK P +RLKQLNFASQ+L +LQHLRT++++F A
Sbjct:   16 QNAARPLRVEFERGQLDQEDNVGQILFKKTVGVPRSFSAWQRRYFVLGGAVAKVHVLQVYVSKQSYDRMVLAVFENRRINERVKAYKLSNLFKCGPIKASICCYRRERSVVKSFKGHPTPLYFFTVKPPKSRLKQLNFASQNLGDLQHLRTSISKFTA 173
[Close]
BLAST of mRNA_M-pyrifera_M_contig10565.1207.1 vs. uniprot
Match: D7FX00_ECTSI (PDZ domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX00_ECTSI)

HSP 1 Score: 233 bits (594), Expect = 2.090e-72
Identity = 113/147 (76.87%), Postives = 132/147 (89.80%), Query Frame = 1 
Query:    1 LQRAARPLRVHFERGKLAAEDNVGLILFKKTVGVPRSFSAWQRRYFVLGGAVAKAHVLQVYVSKQSYDRMVLAVFERQRINERVKAYKLNTHFKCGPIKVRLYKGHPSAINFFSVKLPSTRLKQLNFASQSLAELQHLRTAMTRFAA 441
            ++ AARPLRV FERG+L  EDNVG ILFKKTVGVPRS+SAWQRRYFVLGGAVAK HVLQVYVSKQSYDRMVLAVFE +RINERVKAYKL+  FKCGPIKV+ +KGHP+ + FF+VKLP +RLKQLNFASQ+L +LQHLRT++++F +
Sbjct:  321 IKNAARPLRVEFERGQLEQEDNVGQILFKKTVGVPRSYSAWQRRYFVLGGAVAKVHVLQVYVSKQSYDRMVLAVFENRRINERVKAYKLSNLFKCGPIKVKSFKGHPTPLYFFTVKLPKSRLKQLNFASQNLGDLQHLRTSISKFTS 467
[Close]
BLAST of mRNA_M-pyrifera_M_contig10565.1207.1 vs. uniprot
Match: A0A835ZA47_9STRA (PDZ domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZA47_9STRA)

HSP 1 Score: 134 bits (338), Expect = 6.900e-37
Identity = 70/144 (48.61%), Postives = 95/144 (65.97%), Query Frame = 1 
Query:    1 LQRAARPLRVHFERGKLAAEDNVGLILFKKTVGVPRSFSAWQRRYFVLGGAVAKAHVLQVYVSKQSYDRMVLAVFERQRINERVKAYKLNTHFKCGPIKVRLYKGHPSAINFFSVKLPSTRLKQLNFASQSLAELQHLRTAMTR 432
            ++ A RP+RV F RG    E NVG  L+K   G PRS+  W+RRYFV+GGAVA+ +VLQ+Y SKQ++D +V+AVF+R  + +RVKA KL + +   PI+ + Y G P    FF VK      KQ+NFAS+SL EL+ LR  + R
Sbjct:   62 IKAAPRPMRVTFARGGGGEEANVGRCLYKTCAGAPRSYKVWKRRYFVIGGAVARPNVLQLYNSKQAFDHVVIAVFQRAPVTQRVKAVKLGSAWWTSPIRAKQYDGAPPLHTFF-VKKSGWHFKQMNFASESLPELERLREQILR 204
[Close]
BLAST of mRNA_M-pyrifera_M_contig10565.1207.1 vs. uniprot
Match: A0A7S3XPD0_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XPD0_HETAK)

HSP 1 Score: 118 bits (295), Expect = 4.180e-29
Identity = 58/145 (40.00%), Postives = 100/145 (68.97%), Query Frame = 1 
Query:   16 RPLRVHFERGKLAAEDNV-GLILFKKTV-GVPRSFSAWQRRYFVLGGAVAKAHVLQVYVSKQSYDRMVLAVFERQRINERVKAYKLNTHFKCGPIKVRLYKGHPSAINFFSVKLPSTRLKQLNFASQSLAELQHLRTAMTRFAAN 444
            RP+ V  E  +   +D   G  L+K +V G PR++  W+RRY+V+GGAVA+ +VLQ+Y SK SY+++V+++F++++I +RVKA+KL   FK   IK ++Y+   + + +F++K P +R+KQ+ FAS+++A +Q L     RF ++
Sbjct:  206 RPIFVVLEAPRDQEDDTTQGWCLYKSSVAGAPRAYEKWKRRYYVVGGAVARPNVLQIYESKTSYEQVVVSMFQQKKITQRVKAWKLTRKFKISGIKSKVYRTRATPVKYFALKSPKSRMKQICFASENMAGIQALYAHTKRFCSS 350
[Close]
BLAST of mRNA_M-pyrifera_M_contig10565.1207.1 vs. uniprot
Match: A0A6S8UPM6_9STRA (Hypothetical protein n=3 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A6S8UPM6_9STRA)

HSP 1 Score: 109 bits (272), Expect = 2.530e-25
Identity = 58/144 (40.28%), Postives = 89/144 (61.81%), Query Frame = 1 
Query:   16 RPLRVHFERGKLAAEDNVGLILFKKTVGV--PRSFSAWQRRYFVLGGAVAKAHVLQVYVSKQSYDRMVLAVFERQRINE-RVKAYKLNTHFKCGPIKVRLYKGHPSAINFFSVKLPSTRLKQLNFASQSLAELQHLRTAMTRFA 438
            RPL + FE+   A +   G +L KK+ G   P S + WQR +FV+GGAVAK HVLQ+Y SK  Y+ +V+ +F+ Q +   + KAY L+  FKC  I+ ++YKG    + +F+++ P +R K + FASQ+ + +  L   + RFA
Sbjct:  285 RPLHLVFEKSMAACDSAKGWVLVKKSAGSGPPSSMAGWQRMFFVVGGAVAKRHVLQLYSSKAQYEDIVVRMFQGQPLTGMKYKAYALSGTFKCSAIQSKVYKGEHQPVKYFALRNPYSRTKTMKFASQNPSIVAALHNHVMRFA 428
[Close]
BLAST of mRNA_M-pyrifera_M_contig10565.1207.1 vs. uniprot
Match: A0A8J2SCY5_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SCY5_9STRA)

HSP 1 Score: 109 bits (272), Expect = 6.900e-25
Identity = 58/144 (40.28%), Postives = 89/144 (61.81%), Query Frame = 1 
Query:   16 RPLRVHFERGKLAAEDNVGLILFKKTVGV--PRSFSAWQRRYFVLGGAVAKAHVLQVYVSKQSYDRMVLAVFERQRINE-RVKAYKLNTHFKCGPIKVRLYKGHPSAINFFSVKLPSTRLKQLNFASQSLAELQHLRTAMTRFA 438
            RPL + FE+   A +   G +L KK+ G   P S + WQR +FV+GGAVAK HVLQ+Y SK  Y+ +V+ +F+ Q +   + KAY L+  FKC  I+ ++YKG    + +F+++ P +R K + FASQ+ + +  L   + RFA
Sbjct:  512 RPLHLVFEKSMAACDSAKGWVLVKKSAGSGPPSSMAGWQRMFFVVGGAVAKRHVLQLYSSKAQYEDIVVRMFQGQPLTGMKYKAYALSGTFKCSAIQSKVYKGEHQPVKYFALRNPYSRTKTMKFASQNPSIVAALHNHVMRFA 655
[Close]
BLAST of mRNA_M-pyrifera_M_contig10565.1207.1 vs. uniprot
Match: A0A6U0X2E0_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A6U0X2E0_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 3.560e-19
Identity = 49/146 (33.56%), Postives = 91/146 (62.33%), Query Frame = 1 
Query:   16 RPLRVHFERGKLAAEDNVGLILFKKTVGV--PRSFSAWQRRYFVLGGAVAKAHVLQVYVSKQSYDRMVLAVFERQRINE-RVKAYKLNTHFKCGPIKVRLYKGHPSAINFFSVKLPSTRLKQLNFASQSLAELQHLRTAMTRFAAN 444
            RPLRV FE      + + G IL KK +G   P + ++W+  ++V+GGAVA+ +VLQ+Y SK  Y+ +V+ +F+ + + +   KAY+L+  F+CGP++++ Y G  S +++F +K P ++ K L  AS++ + +  L   + +  ++
Sbjct:  345 RPLRVTFEYAGNYHDMSQGEILLKKDIGYHPPSAITSWKPVFYVIGGAVARENVLQLYQSKSEYESVVVNLFQDKTVKDFNFKAYRLDLSFRCGPVQIKEYPGRKS-LSWFWIKNPQSKTKVLKVASENSSVITALHNQVAKHVSS 489
[Close]
BLAST of mRNA_M-pyrifera_M_contig10565.1207.1 vs. uniprot
Match: A0A7S2DWQ1_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DWQ1_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 1.050e-14
Identity = 45/127 (35.43%), Postives = 70/127 (55.12%), Query Frame = 1 
Query:   16 RPLRVHFERGKLAAEDNVGLILFKKTVG--VPRSFSAWQRRYFVLGGAVAKAHVLQVYVSKQSYDRMVLAVFERQRINE-RVKAYKLNTHFKCGPIKVRLYKGHPSAINFFSVKLPSTRLKQLNFAS 387
            RPL V FE      + + G  + +K  G   P +   W + YFV+GGAVAK HVLQ+Y SK  Y+++V+ +F+   I   R KAY L ++F+   I  + Y+     ++F ++K P ++ K L   S
Sbjct:  318 RPLTVEFESVGHVEDTSQGYCIVRKAPGYKAPPALHMWNKAYFVIGGAVAKPHVLQIYDSKLEYEQVVVNMFQNTPIKGIRYKAYNLTSNFRVSGIHKKSYRLSKKNVHFVTLKNPKSKTKVLKIGS 444
[Close]
BLAST of mRNA_M-pyrifera_M_contig10565.1207.1 vs. uniprot
Match: A0A7S2BII8_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BII8_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 3.420e-14
Identity = 40/103 (38.83%), Postives = 64/103 (62.14%), Query Frame = 1 
Query:  130 RYFVLGGAVAKAHVLQVYVSKQSYDRMVLAVFERQRINE-RVKAYKLNTHFKCGPIKVRLYKGHPSAINFFSVKLPSTRLKQLNFASQSLAELQHLRTAMTRF 435
            +YFV+GGAVAK +VLQ+Y SK  ++++V+ +F+ + I     KAYKL   FKCGP + R Y G    I +F +K P+++ K L   S++ A +  L   + ++
Sbjct:    1 QYFVIGGAVAKGNVLQLYSSKIDFEQVVVNMFQNRPITGIEFKAYKLGLSFKCGPCRERHYGGR--TITYFWLKNPASKTKVLKIGSENAAVITALYAQVRKY 101
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig10565.1207.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A6H5JQ14_9PHAE1.020e-7272.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FX00_ECTSI2.090e-7276.87PDZ domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A835ZA47_9STRA6.900e-3748.61PDZ domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A7S3XPD0_HETAK4.180e-2940.00Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A6S8UPM6_9STRA2.530e-2540.28Hypothetical protein n=3 Tax=Pelagomonas calceolat... [more]
A0A8J2SCY5_9STRA6.900e-2540.28Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A6U0X2E0_9STRA3.560e-1933.56Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2DWQ1_9STRA1.050e-1435.43Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S2BII8_9STRA3.420e-1438.83Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig10565contigM-pyrifera_M_contig10565:418..3690 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score235.3
Seed ortholog evalue1.8e-59
Seed eggNOG ortholog2880.D7FX00
Hectar predicted targeting categorymitochondrion
EggNOG free text desc.Domain present in PSD-95, Dlg, and ZO-1/2.
EggNOG OGs2CMNN@1,2QR1W@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size450
Cds size450
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig10565.1207.1prot_M-pyrifera_M_contig10565.1207.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig10565 418..3690 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815565.0140493-CDS-M-pyrifera_M_contig10565:417..6121622815565.0140493-CDS-M-pyrifera_M_contig10565:417..612Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10565 418..612 +
1692277466.1015267-CDS-M-pyrifera_M_contig10565:417..6121692277466.1015267-CDS-M-pyrifera_M_contig10565:417..612Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10565 418..612 +
1622815565.0330153-CDS-M-pyrifera_M_contig10565:3013..31231622815565.0330153-CDS-M-pyrifera_M_contig10565:3013..3123Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10565 3014..3123 +
1692277466.1148324-CDS-M-pyrifera_M_contig10565:3013..31231692277466.1148324-CDS-M-pyrifera_M_contig10565:3013..3123Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10565 3014..3123 +
1622815565.045244-CDS-M-pyrifera_M_contig10565:3545..36901622815565.045244-CDS-M-pyrifera_M_contig10565:3545..3690Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10565 3546..3690 +
1692277466.1298938-CDS-M-pyrifera_M_contig10565:3545..36901692277466.1298938-CDS-M-pyrifera_M_contig10565:3545..3690Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10565 3546..3690 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig10565.1207.1

>prot_M-pyrifera_M_contig10565.1207.1 ID=prot_M-pyrifera_M_contig10565.1207.1|Name=mRNA_M-pyrifera_M_contig10565.1207.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=150bp
LQRAARPLRVHFERGKLAAEDNVGLILFKKTVGVPRSFSAWQRRYFVLGG
AVAKAHVLQVYVSKQSYDRMVLAVFERQRINERVKAYKLNTHFKCGPIKV
RLYKGHPSAINFFSVKLPSTRLKQLNFASQSLAELQHLRTAMTRFAANS*
back to top

mRNA from alignment at M-pyrifera_M_contig10565:418..3690+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig10565.1207.1 ID=mRNA_M-pyrifera_M_contig10565.1207.1|Name=mRNA_M-pyrifera_M_contig10565.1207.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=3273bp|location=Sequence derived from alignment at M-pyrifera_M_contig10565:418..3690+ (Macrocystis pyrifera P11B4 male)
CTGCAGCGCGCCGCAAGGCCGCTCCGAGTCCATTTCGAGCGGGGGAAGCT
AGCGGCCGAGGACAACGTGGGGTTGATCCTCTTCAAGAAGACGGTGGGGG
TGCCTCGCAGCTTCTCCGCCTGGCAACGAAGGTACTTCGTCCTGGGAGGG
GCGGTGGCTAAGGCGCACGTGCTCCAGGTGTACGTCTCCAAGCAGGTGAG
GGCAAGTTTTACTATTACGGGGGTCCATAGTTAACAGGACCTATGGTGTA
CATAAAAACCTGTATATTTAGGTATTTTTACTTGCAATATTTGGTCCTGT
TTACTATGGCCCCCCGTAATACTTGACACGGACGCCTTGGTTGCAGTGAC
GACGCCACTTTTCGCTGGGTGTACCAGCATAGAAAATCTGAAGTCAGAGG
TCCTGCTCGTACGAGCGCAGAAGAATGAAAAATAGTAGGGATCGTGCTCT
TTTTGTTTCCAGTATGTAAACGGCTCCCGAATTTCGGCTTCCTTATTTTT
CTTGATTTCACCGTAAATTCAGCCTGGCTTTCTGTATTTTGATGGCGGTC
TTGGCTCCCGAATTTCGAGTTCCTTATTTTCTTGATTTCACTGTCAATTC
AACCTGGCTCTCTGCATTTTGATGGTGCTCTTTTCACTGTTGCGGCTCCC
GAGAGTAGTAGTCTGTCTCGTGTGAATCATCAGCCGGGCTTTTCTTAAGT
GCGTTTTTTTTTAATGTGACGGCTCCCGACCGAATTTCGAGTTTTTCTTA
TTTTTTCATGTGAAATTTCTGCTTGGCTTGGTAATTAATATGAATAGTGC
TCTTTTTCAGTGTAACGGGTCCCGAGTTTCCTATTTTTTCGCGTGGAATA
TGTGCCTGGCTTTTCTCGAGTGCTCTTTTTTTCAGTGCATGATGGCTCCC
GAATTTCTCTGTTCGCCTGCGAATCTATCTCAGCCTGGCTTTCCTCGTGC
CCATTTTCTCAGCATCTCCAGTACCTATCAGCCCCCGAATGTGAGGACCT
TTTTTTTTTCTAATAGTATTAATGATTAATGATGTTAATGTTGCTTGTAT
TAAGTATTAAGGGGCGGACTGGGTACCACTCTGAAGGGAAACGGAAGGAT
CGTTGGCGTATGGACGTATAAAGTCTGAAAGTTCCCCGCCTGGGAGAGAT
CATGATCTATCTATCTATTTTATCTATCTATCTATCTATCTATCTATCTA
TCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATC
TAACAGGTATCTATCTATCTTTCTATCTGTCTGTCTATCTATCTATATAT
CTATCTATTCTATCTTTCTATCTCTTATCTATCTATCTATTCTGTCTTTC
TATCTCTATCTATCCATCTATCTATCTATTCTATCTATCTATATATCTAT
CTATAAATGCATAGATCATCTTGGGTTCCTCGCCTGCCTCTGTGAGAGCT
TACGCGGGATCTGCATAACATGTAGTGTAGAATGTCCAGATCCAACCCAG
GAGACACATGGGCGCCACTTGTATCGATGGGTGGCGCAGTTTTCTTTCTA
CGGCTCCCAGCCGGCAGCGTGGGCTACTGTTGCGGGGGAACATACTAGTA
TAGTAGTAAACAGGACCAAATGTGCTCAGCAAAAATACCGAAATACGCAG
GTTTTTGTGTGTACCGTAGGTCCTATTTACTATGGTCCCCCGTAATAGCA
CAGTAGTAAATAGGACCAAATATGCCCAGTAAAAATACTGCAATATATAG
ATTTTGGTGTGTATGATGGGTCCTGTTTACCGTGGTACCGCGTGATAGTC
CATGCAGATCATGGACCTATCTATCTGCCAGCGCTAGAGGGTTTAGAGGG
TGACGTGAGGAATCGATGCTTTTATGTCTGTACGAGGTGTGAACCGTTTT
ACCTTAGCCGTTCCGCTTTTTTAAAAGTGCATCCCTGCAGTCCCGTTTTT
ACGACAAAATCAGTGTTATTATTACGGGGGGCCATAGTAAATAGGACCAA
ATGTTGTTAGTAAAAGTAGTGAAATGTATAGGTTTTTGTGCGTATAGTAG
GTCCTATTTACTATGGCCCCCCGCAATAGTAATTAGAGCGGTTTGTTCCC
GAGGCGGGACTGCAGTAGTATTAAGAAAAAGGTCATGTAAGGGTTCTTTC
TGTCCATGGTGTTCTCCTGTGCTCTCCCATGTCTGGCGGTTGGTTCGGCC
GAGCTTCCTTGCGTGTGCTGCTCGAACAACAAAGTGCCCGAACAGAAAAG
AGAGCCTTTTCCGAGCACACCGAACCAGCTGGCACGTCAGCCGACCGGTT
AAAAGAGTGCCGGGCCGGGGTGGTTGGTGCCCGCCGTTAGGCGAAGCCGA
AAATAAGCTCTCCTTGAGAAAAAAAAGGCCTTACATAACAGTTTCGTGAC
GAAAAAAAACCCTACCTCATTGGAACAGCATCGTTTTGTTCGAGCACGTC
TGACGAAGTTCGCCGGAATGGGCAGATTGAGGACAGCTGTGTTCTCCTGT
GCTGCTGTGTCTCTCGTTTTTCCCCGTGTCCCGTGTCTCCCCCGTCCTAT
TCGTCTCATGGCTGCCTCCCTCCATCTCTTGTCCCTCGTGTGCCAGAGTT
ACGACCGGATGGTCCTGGCCGTGTTCGAGAGGCAGCGCATCAACGAGCGA
GTGAAAGCCTACAAGCTGAACACCCACTTCAAGTGTGGCCCGATCAAGGT
CAGATTGTTGACAGGAGATTACACCATGACTGAATGTGCCTGGTATATGT
TTTGAGGTGTACGAACTTGGTCCAGTTATCACTTCTCGGTGCCTTTTTTT
TTTGGTTTGCTGTTGTTTTGATAAAACAAAACAAACCTATGTTTTTTTTC
CCGATGTGTTTCTTCAGTAAGGCTGTTTCCTATGCGGTTCGATCCTTGGC
GCTTGCTCGAATCTCTGCACGCACAATAATTGAGATCTTTGCGCATAGGA
AGACTGTTTCGAATGGCCGAGTTCATATCTGAAAATGCGATCGGGTCAAA
ATCTGAAGCTCGAAAATCGAACCGCATAGGAAACGGCCTAATATATATAT
ACTCGTATATATATATTGTCTTTTTTAAACGTAACAACTGCTTTATTTGT
TTGTTTTACTTTCGTTGCAGGTGAGGAGGTACAAGGGACACCCTTCCGCC
ATCAACTTCTTTTCGGTCAAGCTCCCCTCCACGCGCTTGAAGCAGCTCAA
TTTCGCCTCCCAATCTTTGGCGGAGCTCCAGCACCTGCGCACGGCGATGA
CTCGCTTCGCGGCGAACTCGTAA
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig10565:418..3690+

>mRNA_M-pyrifera_M_contig10565.1207.1 ID=mRNA_M-pyrifera_M_contig10565.1207.1|Name=mRNA_M-pyrifera_M_contig10565.1207.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=900bp|location=Sequence derived from alignment at M-pyrifera_M_contig10565:418..3690+ (Macrocystis pyrifera P11B4 male)
CTGCAGCGCGCCGCAAGGCCGCTCCGAGTCCATTTCGAGCGGGGGAAGCT
AGCGGCCGAGGACAACGTGGGGTTGATCCTCTTCAAGAAGACGGTGGGGG
TGCCTCGCAGCTTCTCCGCCTGGCAACGAAGGTACTTCGTCCTGGGAGGG
GCGGTGGCTAAGGCGCACGTGCTCCAGGTGTACGTCTCCAAGCAGCTGCA
GCGCGCCGCAAGGCCGCTCCGAGTCCATTTCGAGCGGGGGAAGCTAGCGG
CCGAGGACAACGTGGGGTTGATCCTCTTCAAGAAGACGGTGGGGGTGCCT
CGCAGCTTCTCCGCCTGGCAACGAAGGTACTTCGTCCTGGGAGGGGCGGT
GGCTAAGGCGCACGTGCTCCAGGTGTACGTCTCCAAGCAGAGTTACGACC
GGATGGTCCTGGCCGTGTTCGAGAGGCAGCGCATCAACGAGCGAGTGAAA
GCCTACAAGCTGAACACCCACTTCAAGTGTGGCCCGATCAAGGTCAGATT
AGTTACGACCGGATGGTCCTGGCCGTGTTCGAGAGGCAGCGCATCAACGA
GCGAGTGAAAGCCTACAAGCTGAACACCCACTTCAAGTGTGGCCCGATCA
AGGTCAGATTGTACAAGGGACACCCTTCCGCCATCAACTTCTTTTCGGTC
AAGCTCCCCTCCACGCGCTTGAAGCAGCTCAATTTCGCCTCCCAATCTTT
GGCGGAGCTCCAGCACCTGCGCACGGCGATGACTCGCTTCGCGGCGAACT
CGTAAGTACAAGGGACACCCTTCCGCCATCAACTTCTTTTCGGTCAAGCT
CCCCTCCACGCGCTTGAAGCAGCTCAATTTCGCCTCCCAATCTTTGGCGG
AGCTCCAGCACCTGCGCACGGCGATGACTCGCTTCGCGGCGAACTCGTAA
back to top